Metagenome / Metatranscriptome Family F036414

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F036414
Family Type	Metagenome / Metatranscriptome
Number of Sequences	170
Average Sequence Length	54 residues
Representative Sequence	MLGRIGILGFLGFIIFVAWFIGWIFFGFHEGLYHLLFPIAVVLMVAQGVRRVAR
Number of Associated Samples	117
Number of Associated Scaffolds	170

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.35 %
% of genes near scaffold ends (potentially truncated)	29.41 %
% of genes from short scaffolds (< 2000 bps)	85.29 %
Associated GOLD sequencing projects	105
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.75

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (61.176 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (18.235 % of family members)
Environment Ontology (ENVO)	Unclassified (35.294 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (61.765 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.32% β-sheet: 0.00% Coil/Unstructured: 42.68%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.75
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.75
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.24.9.1: alpha-catenin/vinculin	d3rf3a1	3rf3	0.81688
f.63.1.1: Claudin	d3jbre_	3jbr	0.77123
a.25.1.1: Ferritin	d1z6oa1	1z6o	0.76135
a.138.1.3: Di-heme elbow motif	d1oaha_	1oah	0.76125
a.25.1.2: Ribonucleotide reductase-like	d2uw1a_	2uw1	0.75185

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 170 Family Scaffolds
PF00326	Peptidase_S9	19.41
PF12893	Lumazine_bd_2	4.12
PF00501	AMP-binding	1.76
PF02687	FtsX	1.18
PF12704	MacB_PCD	0.59
PF09850	DotU	0.59
PF01554	MatE	0.59
PF16169	DUF4872	0.59
PF01370	Epimerase	0.59
PF04397	LytTR	0.59
PF13659	Obsolete Pfam Family	0.59
PF12695	Abhydrolase_5	0.59
PF01944	SpoIIM	0.59
PF08281	Sigma70_r4_2	0.59
PF13860	FlgD_ig	0.59
PF13231	PMT_2	0.59
PF06580	His_kinase	0.59
PF06744	IcmF_C	0.59

COG ID	Name	Functional Category	% Frequency in 170 Family Scaffolds
COG1300	Stage II sporulation protein SpoIIM, component of the engulfment complex	Cell cycle control, cell division, chromosome partitioning [D]	0.59
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	0.59
COG3275	Sensor histidine kinase, LytS/YehU family	Signal transduction mechanisms [T]	0.59
COG3523	Type VI protein secretion system component VasK	Intracellular trafficking, secretion, and vesicular transport [U]	0.59

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.76 %
Unclassified	root	N/A	38.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.18 %
Unclassified	root	N/A	38.24 %
Viruses	superkingdom	All Organisms → Viruses	0.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.18 %
Unclassified	root	N/A	38.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.24 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	15.88 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	2.35 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.24 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	15.29 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2.35 %
Armatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes	0.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.24 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	12.35 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	2.94 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	2.35 %
Fimbriimonadia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia	0.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.24 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	12.35 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.94 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	2.35 %
Fimbriimonadales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales	0.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.24 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	11.76 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.94 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	2.35 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	0.59 %
Fimbriimonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales → Fimbriimonadaceae	0.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.24 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	4.71 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.94 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	2.35 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.59 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.59 %
Fimbriimonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales → Fimbriimonadaceae → Fimbriimonas	0.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.24 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4.71 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.94 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	2.35 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.59 %
Fimbriimonas ginsengisoli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales → Fimbriimonadaceae → Fimbriimonas → Fimbriimonas ginsengisoli	0.59 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.59 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000443\|F12B_11144018	Not Available	607	Open in IMG/M
3300000956\|JGI10216J12902_101639011	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1440	Open in IMG/M
3300003267\|soilL1_10116314	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1880	Open in IMG/M
3300003319\|soilL2_10151508	All Organisms → cellular organisms → Bacteria	2681	Open in IMG/M
3300003324\|soilH2_10168124	All Organisms → cellular organisms → Bacteria	1385	Open in IMG/M
3300004114\|Ga0062593_100633047	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300004114\|Ga0062593_100715917	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300004153\|Ga0063455_101199635	Not Available	569	Open in IMG/M
3300004156\|Ga0062589_100266163	All Organisms → cellular organisms → Bacteria	1298	Open in IMG/M
3300004156\|Ga0062589_101097632	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	752	Open in IMG/M
3300004463\|Ga0063356_104090190	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300004479\|Ga0062595_100037231	All Organisms → cellular organisms → Bacteria	2081	Open in IMG/M
3300005290\|Ga0065712_10689613	Not Available	542	Open in IMG/M
3300005329\|Ga0070683_100649649	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300005332\|Ga0066388_101960300	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300005333\|Ga0070677_10057934	All Organisms → cellular organisms → Bacteria	1589	Open in IMG/M
3300005333\|Ga0070677_10703621	Not Available	569	Open in IMG/M
3300005338\|Ga0068868_101536876	Not Available	624	Open in IMG/M
3300005345\|Ga0070692_11376111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales → Fimbriimonadaceae → Fimbriimonas → Fimbriimonas ginsengisoli	509	Open in IMG/M
3300005355\|Ga0070671_101898320	Not Available	530	Open in IMG/M
3300005356\|Ga0070674_100243796	All Organisms → cellular organisms → Bacteria	1408	Open in IMG/M
3300005356\|Ga0070674_100309253	All Organisms → cellular organisms → Bacteria	1263	Open in IMG/M
3300005356\|Ga0070674_101518174	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300005367\|Ga0070667_100993510	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300005439\|Ga0070711_100070828	All Organisms → cellular organisms → Bacteria	2456	Open in IMG/M
3300005456\|Ga0070678_100532392	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300005457\|Ga0070662_100058236	All Organisms → cellular organisms → Bacteria	2811	Open in IMG/M
3300005457\|Ga0070662_100178163	All Organisms → cellular organisms → Bacteria	1674	Open in IMG/M
3300005471\|Ga0070698_100041408	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4728	Open in IMG/M
3300005471\|Ga0070698_101458752	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300005564\|Ga0070664_100659063	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300005564\|Ga0070664_101115500	Not Available	743	Open in IMG/M
3300005614\|Ga0068856_100447161	All Organisms → cellular organisms → Bacteria	1313	Open in IMG/M
3300005616\|Ga0068852_100324458	All Organisms → cellular organisms → Bacteria	1496	Open in IMG/M
3300005841\|Ga0068863_101117282	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300005844\|Ga0068862_100777641	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	933	Open in IMG/M
3300005890\|Ga0075285_1061044	Not Available	519	Open in IMG/M
3300006058\|Ga0075432_10481346	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300006169\|Ga0082029_1305218	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1264	Open in IMG/M
3300006237\|Ga0097621_100964261	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300006755\|Ga0079222_10248641	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300006755\|Ga0079222_12049154	Not Available	564	Open in IMG/M
3300006844\|Ga0075428_100145129	All Organisms → cellular organisms → Bacteria	2580	Open in IMG/M
3300006844\|Ga0075428_100386364	All Organisms → cellular organisms → Bacteria	1501	Open in IMG/M
3300006844\|Ga0075428_100613416	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300006844\|Ga0075428_100977356	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	897	Open in IMG/M
3300006844\|Ga0075428_101044866	Not Available	864	Open in IMG/M
3300006844\|Ga0075428_101792384	Not Available	639	Open in IMG/M
3300006845\|Ga0075421_100133809	All Organisms → cellular organisms → Bacteria	3107	Open in IMG/M
3300006845\|Ga0075421_100137689	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3056	Open in IMG/M
3300006845\|Ga0075421_100195255	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2509	Open in IMG/M
3300006845\|Ga0075421_100334230	All Organisms → cellular organisms → Bacteria	1834	Open in IMG/M
3300006845\|Ga0075421_100338698	All Organisms → cellular organisms → Bacteria	1820	Open in IMG/M
3300006845\|Ga0075421_101303520	Not Available	804	Open in IMG/M
3300006846\|Ga0075430_100001288	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	20222	Open in IMG/M
3300006846\|Ga0075430_100116393	All Organisms → cellular organisms → Bacteria	2228	Open in IMG/M
3300006847\|Ga0075431_100929256	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300006847\|Ga0075431_101297973	Not Available	689	Open in IMG/M
3300006871\|Ga0075434_100145198	All Organisms → cellular organisms → Bacteria	2393	Open in IMG/M
3300006871\|Ga0075434_100867320	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300006871\|Ga0075434_100895544	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300006876\|Ga0079217_10106804	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1271	Open in IMG/M
3300006876\|Ga0079217_11344344	Not Available	555	Open in IMG/M
3300006880\|Ga0075429_100945650	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300006881\|Ga0068865_100321840	All Organisms → cellular organisms → Bacteria	1244	Open in IMG/M
3300006894\|Ga0079215_10701243	Not Available	684	Open in IMG/M
3300006918\|Ga0079216_10096819	All Organisms → cellular organisms → Bacteria	1419	Open in IMG/M
3300006918\|Ga0079216_10789609	Not Available	695	Open in IMG/M
3300006969\|Ga0075419_11079201	Not Available	587	Open in IMG/M
3300007004\|Ga0079218_11318671	Not Available	762	Open in IMG/M
3300007004\|Ga0079218_11497323	Not Available	730	Open in IMG/M
3300007004\|Ga0079218_12458831	Not Available	614	Open in IMG/M
3300007004\|Ga0079218_13051234	Not Available	564	Open in IMG/M
3300009100\|Ga0075418_11383744	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	763	Open in IMG/M
3300009147\|Ga0114129_11810971	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300009176\|Ga0105242_10579780	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1080	Open in IMG/M
3300009176\|Ga0105242_10593800	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1068	Open in IMG/M
3300009840\|Ga0126313_11193947	Not Available	627	Open in IMG/M
3300009840\|Ga0126313_11227420	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	618	Open in IMG/M
3300010036\|Ga0126305_10263252	All Organisms → cellular organisms → Bacteria	1111	Open in IMG/M
3300010037\|Ga0126304_10056724	All Organisms → cellular organisms → Bacteria	2392	Open in IMG/M
3300010041\|Ga0126312_10639940	Not Available	766	Open in IMG/M
3300010398\|Ga0126383_11160644	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	862	Open in IMG/M
3300010399\|Ga0134127_11800554	Not Available	688	Open in IMG/M
3300010399\|Ga0134127_12532199	Not Available	593	Open in IMG/M
3300010403\|Ga0134123_11814970	Not Available	664	Open in IMG/M
3300012212\|Ga0150985_107383274	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1120	Open in IMG/M
3300012212\|Ga0150985_121459258	Not Available	505	Open in IMG/M
3300012212\|Ga0150985_122423073	All Organisms → cellular organisms → Bacteria	1785	Open in IMG/M
3300012899\|Ga0157299_10324704	Not Available	519	Open in IMG/M
3300012901\|Ga0157288_10031685	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300012904\|Ga0157282_10322923	Not Available	552	Open in IMG/M
3300012913\|Ga0157298_10319997	Not Available	558	Open in IMG/M
3300012914\|Ga0157297_10150199	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300012955\|Ga0164298_10007583	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4045	Open in IMG/M
3300012957\|Ga0164303_10312113	Not Available	933	Open in IMG/M
3300012987\|Ga0164307_10555591	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300013306\|Ga0163162_12569946	Not Available	586	Open in IMG/M
3300014745\|Ga0157377_10712077	Not Available	730	Open in IMG/M
3300015371\|Ga0132258_10400130	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3411	Open in IMG/M
3300015371\|Ga0132258_10600756	All Organisms → cellular organisms → Bacteria	2762	Open in IMG/M
3300015371\|Ga0132258_11201979	All Organisms → cellular organisms → Bacteria	1916	Open in IMG/M
3300015371\|Ga0132258_11588842	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1651	Open in IMG/M
3300015371\|Ga0132258_12835390	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300015372\|Ga0132256_101168151	Not Available	884	Open in IMG/M
3300015372\|Ga0132256_103404785	Not Available	535	Open in IMG/M
3300015373\|Ga0132257_100108550	All Organisms → cellular organisms → Bacteria	3205	Open in IMG/M
3300015373\|Ga0132257_100452909	All Organisms → cellular organisms → Bacteria	1568	Open in IMG/M
3300015373\|Ga0132257_102403381	Not Available	684	Open in IMG/M
3300015374\|Ga0132255_101091579	All Organisms → cellular organisms → Bacteria	1199	Open in IMG/M
3300018067\|Ga0184611_1284293	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	578	Open in IMG/M
3300018422\|Ga0190265_12789048	Not Available	584	Open in IMG/M
3300018469\|Ga0190270_11136865	Not Available	816	Open in IMG/M
3300018476\|Ga0190274_10228331	All Organisms → cellular organisms → Bacteria	1666	Open in IMG/M
3300019377\|Ga0190264_11031303	Not Available	661	Open in IMG/M
3300020082\|Ga0206353_11418253	Not Available	521	Open in IMG/M
3300021445\|Ga0182009_10059625	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1642	Open in IMG/M
3300021445\|Ga0182009_10146035	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300022756\|Ga0222622_10083496	All Organisms → cellular organisms → Bacteria	1916	Open in IMG/M
3300024055\|Ga0247794_10261626	Not Available	574	Open in IMG/M
3300025315\|Ga0207697_10005104	All Organisms → cellular organisms → Bacteria	6146	Open in IMG/M
3300025893\|Ga0207682_10369269	Not Available	677	Open in IMG/M
3300025907\|Ga0207645_10933559	Not Available	589	Open in IMG/M
3300025908\|Ga0207643_10035176	All Organisms → cellular organisms → Bacteria	2808	Open in IMG/M
3300025925\|Ga0207650_11771754	Not Available	523	Open in IMG/M
3300025926\|Ga0207659_10727808	Not Available	850	Open in IMG/M
3300025931\|Ga0207644_11050298	Not Available	684	Open in IMG/M
3300025934\|Ga0207686_10532276	Not Available	916	Open in IMG/M
3300025934\|Ga0207686_11581100	Not Available	541	Open in IMG/M
3300025936\|Ga0207670_11691671	Not Available	538	Open in IMG/M
3300025940\|Ga0207691_10080886	All Organisms → cellular organisms → Bacteria	2921	Open in IMG/M
3300025941\|Ga0207711_10363990	All Organisms → cellular organisms → Bacteria	1340	Open in IMG/M
3300025960\|Ga0207651_11133895	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300026078\|Ga0207702_10842268	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300026078\|Ga0207702_11089982	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	792	Open in IMG/M
3300026078\|Ga0207702_11984342	All Organisms → cellular organisms → Bacteria → FCB group	572	Open in IMG/M
3300026088\|Ga0207641_11048070	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	813	Open in IMG/M
3300026089\|Ga0207648_10166231	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1949	Open in IMG/M
3300026089\|Ga0207648_11980193	Not Available	544	Open in IMG/M
3300026142\|Ga0207698_10342574	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1409	Open in IMG/M
3300026142\|Ga0207698_10538315	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300027880\|Ga0209481_10478541	Not Available	642	Open in IMG/M
3300027886\|Ga0209486_10467024	Not Available	778	Open in IMG/M
3300027907\|Ga0207428_10218878	All Organisms → cellular organisms → Bacteria	1428	Open in IMG/M
3300027909\|Ga0209382_10031042	All Organisms → cellular organisms → Bacteria	6436	Open in IMG/M
3300027909\|Ga0209382_10042682	All Organisms → cellular organisms → Bacteria	5431	Open in IMG/M
3300027909\|Ga0209382_10067351	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4235	Open in IMG/M
3300027909\|Ga0209382_10883754	Not Available	943	Open in IMG/M
3300027909\|Ga0209382_11343939	Not Available	721	Open in IMG/M
3300028380\|Ga0268265_11540525	Not Available	669	Open in IMG/M
3300028380\|Ga0268265_12146956	Not Available	565	Open in IMG/M
3300028881\|Ga0307277_10206902	Not Available	861	Open in IMG/M
3300030496\|Ga0268240_10113514	Not Available	644	Open in IMG/M
3300031170\|Ga0307498_10354664	Not Available	565	Open in IMG/M
3300031548\|Ga0307408_100004674	All Organisms → cellular organisms → Bacteria	9251	Open in IMG/M
3300031548\|Ga0307408_102234698	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300031716\|Ga0310813_10819418	Not Available	839	Open in IMG/M
3300031731\|Ga0307405_10187750	All Organisms → cellular organisms → Bacteria	1490	Open in IMG/M
3300031731\|Ga0307405_11056481	Not Available	696	Open in IMG/M
3300031740\|Ga0307468_100480855	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	978	Open in IMG/M
3300031824\|Ga0307413_10279582	All Organisms → Viruses → Predicted Viral	1255	Open in IMG/M
(restricted) 3300031825\|Ga0255338_1000191	All Organisms → cellular organisms → Bacteria	247862	Open in IMG/M
3300031852\|Ga0307410_10426931	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M
3300031854\|Ga0310904_10219750	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300031901\|Ga0307406_11872220	Not Available	534	Open in IMG/M
3300031939\|Ga0308174_10491357	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1003	Open in IMG/M
3300031996\|Ga0308176_12832637	Not Available	515	Open in IMG/M
3300032211\|Ga0310896_10480917	Not Available	677	Open in IMG/M
3300033475\|Ga0310811_10561801	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1165	Open in IMG/M
3300033513\|Ga0316628_103276859	Not Available	588	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	58.24%
Environmental	Environmental	41.76%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	58.24%
Terrestrial	Environmental → Terrestrial	40.59%
Aquatic	Environmental → Aquatic	1.18%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	40.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	37.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.00%
Sediment	Environmental → Aquatic → Sediment	1.18%
Roots	Host-Associated → Plants → Roots	0.59%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.65%
Loam	Environmental → Terrestrial → Soil → Loam	5.29%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.18%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.18%
Sand	Environmental → Terrestrial → Soil → Sand	0.59%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.59%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.59%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	12.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.53%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.35%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.18%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.18%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.18%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.59%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.59%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.59%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	18.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	7.06%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.29%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	5.29%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.12%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.35%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.35%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.76%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.76%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.76%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.76%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.18%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.18%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.59%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.59%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.59%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.59%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.59%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.59%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.59%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.59%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.59%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005890	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_104	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031825 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T4_195	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
F12B_111440182	3300000443	Soil	MLGRIGVLGFLGIIVFVAWAIGWIFFNLHEGPYHLLFLAAVVLMIAQGVTRVAR*
JGI10216J12902_1016390111	3300000956	Soil	MLGRIGVLGFLGIIVFVAWAIGWIFFGLHEGHYHLLFVVAVVLMIAQGVTRVAR*
soilL1_101163142	3300003267	Sugarcane Root And Bulk Soil	MLDRIGILGFLGLVIFIAWAVGWLFFGFHEGLYHLWLAVAAVLMIAQGVRRIAR*
soilL2_101515082	3300003319	Sugarcane Root And Bulk Soil	MLDRIGILGFLGIIVFVAWAIGWIAFGFHEGLYHLLFVVAVVLMIAQGVRRVAR*
soilH2_101681241	3300003324	Sugarcane Root And Bulk Soil	FLGLIIFIAWFVGWIFLGFHAHGYHLLFLAAVVLMIAQGVVRVAR*
Ga0062593_1006330471	3300004114	Soil	MLGRIGVLGFLGIIVFVGWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVTRIAR*
Ga0062593_1007159171	3300004114	Soil	MLDRIGILGILGFLIFVAWFVGWVFLGFHEGLYHVLFPISVVLMVAQGVRRVAR*
Ga0063455_1011996351	3300004153	Soil	MLGRIGVLGFLGIIVFVAWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVIRVAR*
Ga0062589_1002661632	3300004156	Soil	MLGRIGILGFVGFLIFAAWFIGWVFLGFHNGLYHVLFPISVVLMVAQGVRRVAR*
Ga0062589_1010976321	3300004156	Soil	MLDRIGIPGFLGFLIFAAWFIGWIFLGFHDGLYHLLFPISVVLMVAQWVRRVAR*
Ga0063356_1040901902	3300004463	Arabidopsis Thaliana Rhizosphere	HMLGRIGVLGFLGIIVFVAWAIGWIFFNLHEGHYHLLFVAAVVLMIAQGVTRVAR*
Ga0062595_1000372313	3300004479	Soil	MLGRIGVLGFLGIIVFVAWAIGWIFFNLHEGHYHLLFVAAVVLMIAQGVTRVAR*
Ga0065712_106896132	3300005290	Miscanthus Rhizosphere	VNMLGRIGVLGFLGIIVFVGWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVTRIAR*
Ga0070683_1006496491	3300005329	Corn Rhizosphere	MLGRIGILGFLGAIIFLAWFIGWIFFGFHDGLYHLLFPISVVLMMAQGVRRVAR*
Ga0066388_1019603002	3300005332	Tropical Forest Soil	MLGRIGVLGFLGIIVFVAWAIGWIFFNLHEGHYHLLFLAAVVLMIAQGVTRVAR*
Ga0070677_100579342	3300005333	Miscanthus Rhizosphere	MLDRIGILGFLGFLIFAAWFIGWIFLGFHDGLYHLLFPISVVLMLAQGVRRVARRAE*
Ga0070677_107036211	3300005333	Miscanthus Rhizosphere	MLGRIGILGFLGAIIFLGWFIGWIFFGFHDGLYHLLFPISVVLMMAQGVTRVAR*
Ga0068868_1015368761	3300005338	Miscanthus Rhizosphere	MLGRIGILGFLGAIIFLGWFIGWIFFGFHNGLYHLLFPISVVLMMAQGVRRVAR*
Ga0070692_113761111	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MLGRIGVLGFLGIIVFVVWAIGWIFFNFHDWHYHLLFLAAVVLMIAQGVNRVAR*
Ga0070671_1018983201	3300005355	Switchgrass Rhizosphere	MLGRIGILGFLGAIIFLGWFIGWIFLGFHNGLYHLLFPISVVLMMAQGVTRVAR*
Ga0070674_1002437962	3300005356	Miscanthus Rhizosphere	MLGRIGVLGFLGIIVFVAWAIGWIFFNFHEGYYHLLFLAAVVLMIAQGVTRVAR*
Ga0070674_1003092531	3300005356	Miscanthus Rhizosphere	MLGRIGVLGFLGIIVFVAWAIGWIFLNLHDWHYHLLFLAAVVLMIAQGVNRVAR*
Ga0070674_1015181741	3300005356	Miscanthus Rhizosphere	IGILGFLGFLIFAAWFIGWIFLGFHDGLYHLLFPISVVLMLAQGVRRVARRAE*
Ga0070667_1009935102	3300005367	Switchgrass Rhizosphere	MLGRIGVLGFLGIIVFVGWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVTRVAR*
Ga0070711_1000708283	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MLGRIGVLGFLGIIVFVGWAIGWIFFNLHDWHYHLLFLAAVVMMIAQGVNRVAR*
Ga0070678_1005323921	3300005456	Miscanthus Rhizosphere	MLGRIGILGFVGAIIFVCWFIGWIFLGFHNGLYHLLFPIALVLMIAQGVTRVAR
Ga0070662_1000582362	3300005457	Corn Rhizosphere	MLGRIGILGFVGAIIFVCWFIGWIFLGFHNGLYHLLFPIALVLMIAQGVTRVAR*
Ga0070662_1001781631	3300005457	Corn Rhizosphere	MLGRIGVLGFLGIIVFVGWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVT
Ga0070698_1000414082	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MLGRIGVLGFLGFIIFVGWFVGWVFFGLHDGLYHLLFPISVVLMVAQGVRRVAR*
Ga0070698_1014587522	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	EVHMLGRIGVLGFLGIIVFVAWAIGWIFFNLHEGHYHLLFVAAVVLMIAQGVTRVAR*
Ga0070664_1006590632	3300005564	Corn Rhizosphere	MLGRIGILGFLGAIIFLGWFIGWIFLGFHNGLYHLLFPISVVLMMAQGV
Ga0070664_1011155002	3300005564	Corn Rhizosphere	LGAIIFLAWFIGWIFFGFHDGLYHLLFPISVVLMMAQGVRRVAR*
Ga0068856_1004471611	3300005614	Corn Rhizosphere	MLGRIGVLGLLGIIVFVGWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVNRVAR*
Ga0068852_1003244583	3300005616	Corn Rhizosphere	MLGRIGVLGFLGIIVFVGWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVNRVAR*
Ga0068863_1011172821	3300005841	Switchgrass Rhizosphere	REVNMLGRIGVLGFLGIIVFVGWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVTRIAR*
Ga0068862_1007776412	3300005844	Switchgrass Rhizosphere	MLARIGILGFLGLIIFVAWFVGWVFLGFHEGMYHLLFPVSVVLMIAQGVRRVAR*
Ga0075285_10610442	3300005890	Rice Paddy Soil	MLDRIGILGFLGILVFIAWAVGWLFFGLHEGFYHLWLVVAIVLMIAQGVRRIAR*
Ga0075432_104813461	3300006058	Populus Rhizosphere	MLGRIGVLGFLGIIVFVAWAIGWIFFNFHEGPYHLLFLAAVVLMIAQGVTRVAR*
Ga0082029_13052182	3300006169	Termite Nest	MFARIGILGSLGIIIFLAWFIGWIFLGFHDGLYHLLFPISVVLMVAQGVRRVAR*
Ga0097621_1009642612	3300006237	Miscanthus Rhizosphere	PACSREVNMLGRIGVLGFLGIIVFVGWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVTRIAR*
Ga0079222_102486412	3300006755	Agricultural Soil	MLGRIGILGFLGLIIFLAWLVGWIFLGFHAGPYHLLFLLAVVLMIAQGVLRVAR*
Ga0079222_120491542	3300006755	Agricultural Soil	MFERIGILGFLGLIIFIAWFVGWIFFGLHAGLYHLLFLVAVVLMVAQGVRRVAR*
Ga0075428_1001451292	3300006844	Populus Rhizosphere	MLGRIGVLGVLGIIVFVAWAVGWIFFGLHEGHYHLLFVVAVVLMVAQGVRRVAR*
Ga0075428_1003863642	3300006844	Populus Rhizosphere	MLDRIGILGFVGFLIFAAWFIGWIFLGFHDGLYHLLFPISVVLMLAQWVRRVARVE*
Ga0075428_1006134161	3300006844	Populus Rhizosphere	MLDRIGVLGFLGIIIFLAWFIGWVFLGFHEGLYHLLFPISVVLMMAQWVRRVAR*
Ga0075428_1009773561	3300006844	Populus Rhizosphere	TGAPATRGKERAMLDRIGIPGFLGFLIFAAWFIGWIFLGFHDGLYHLLFPISVVLMVAQWVRRVAR*
Ga0075428_1010448663	3300006844	Populus Rhizosphere	MLDRIGILGFLGIIIFVAWFVGWIFLGFHDGLYHLLFPVSVVLMVAQGVRRVAR*
Ga0075428_1017923842	3300006844	Populus Rhizosphere	MLGRIGVLGFLGIIVFVAWAIGWIGFGLHEGHYHLLFVVAVALMIAQGVRRVAR*
Ga0075421_1001338094	3300006845	Populus Rhizosphere	MFDRIGILGILGFIIFVAWFVGWVFLGFHDGLYHVLFPIAVVLMVAQGVRRVAR*
Ga0075421_1001376893	3300006845	Populus Rhizosphere	MFDRIGILGFLGIIIFLAWFIGWVFLGFHDGLYHVLFPVSVVLMVAQGVRRVAR*
Ga0075421_1001952551	3300006845	Populus Rhizosphere	MLDRIGILGSIGFLIFAAWFIGWVFLGFHEGLYHVLFPLSVVLMVAQWVRRVAR*
Ga0075421_1003342302	3300006845	Populus Rhizosphere	MLDRIGILGFVGFLIFAAWFIGWIFLGFHDGLYHLLFPISVVLMLAQWVRRVAR*
Ga0075421_1003386982	3300006845	Populus Rhizosphere	MLGRIGILGFVGFLIFAAWFIGWVFLGFHDGLYHLLFPVSVVLMMAQWVRRVAR*
Ga0075421_1013035201	3300006845	Populus Rhizosphere	MLDRIGILGSIGFLIFAAWFIGWIFLGFHEGLYHVLFPISVVLMVAQWVRRVAR*
Ga0075430_1000012882	3300006846	Populus Rhizosphere	MFDRIGILGILGFIIFLAWFIGWVFLGFHEGLYHVLFPIAVVLMVAQGVRRVAR*
Ga0075430_1001163933	3300006846	Populus Rhizosphere	SLVRRRTMFDRIGILGILGFIIFVAWFVGWVFLGFHDGLYHVLFPIAVVLMVAQGVRRVAR*
Ga0075431_1009292562	3300006847	Populus Rhizosphere	MLDRIGILGSIGFLIFAAWFIGWIFLGFHEGLYHVLFPISVVLIVAQWVRRVAR*
Ga0075431_1012979732	3300006847	Populus Rhizosphere	MLDRIGILGFVGFLIFAAWFIGWIFLGFHDGLYHLLFPISVVLMLGQW
Ga0075434_1001451981	3300006871	Populus Rhizosphere	MLDRIGVLGFLGIIIFLAWFIGWVFLGFHEGPYHLLFPISVVLMMVQWVRRVAR*
Ga0075434_1008673202	3300006871	Populus Rhizosphere	LGRIGVLGFLGIIVFVAWAIGWIGFGLHEGHYHLLFVVAVALMIAQGVRRVAR*
Ga0075434_1008955442	3300006871	Populus Rhizosphere	MLGRIGVLGFLGIIIFVAWFVGWVFLGFHEGPYHLLFLVAVVLMIAQGVRRVAR*
Ga0079217_101068041	3300006876	Agricultural Soil	MLGRIGILGFLGIIIFVAWFVGWVFLGFHDGLYHLLFPISVVLMVAQGVRRVAR*
Ga0079217_113443441	3300006876	Agricultural Soil	MIDRIGVLGFLGFLIFVAWFVGWIFLGFHDGLYHLLFPIAVVLMVAQGVRRVA
Ga0075429_1009456501	3300006880	Populus Rhizosphere	RIGVLGFLGIIVFVAWAIGWIGFGLHEGHYHLLFVVAVALMIAQGVRRVAR*
Ga0068865_1003218401	3300006881	Miscanthus Rhizosphere	MLGRIGILGFVGAIIFVCWFIGWIFLGFHNGLYHLLFPIALVLMIAQ
Ga0079215_107012431	3300006894	Agricultural Soil	KPQLAPGGSMFDRIGILGILGIVIFVAWFVGWVFLGFHDGLYHVLFPIAVVLMEAQGVRRDAR*
Ga0079216_100968192	3300006918	Agricultural Soil	MIDRIGVLGFLGFLIFVAWFVGWIFLGFHDGLYHLLFPIAVVLMVAQGVRRVAR*
Ga0079216_107896092	3300006918	Agricultural Soil	MFDRFGILGILAFVIFAAWFIGWVFLGFHDGLYHLLFPIAVVLMVAQGVRR
Ga0075419_110792012	3300006969	Populus Rhizosphere	MLGRIGVLGLLGIIVFVAWAIGWIFFNLHEGPYHLLFLAAVVLMIAQGVTRVAR*
Ga0079218_113186712	3300007004	Agricultural Soil	MLDRIGILGTLGFLIFAAWFIGWIFLGFHDGLYHLLFPISVVLMLAQWVRRVAR*
Ga0079218_114973231	3300007004	Agricultural Soil	MFDRIGILGILGIVIFVAWFVGWVFLGFHDGLYHVLFPIAVVLMVAQGVRRVAR*
Ga0079218_124588311	3300007004	Agricultural Soil	MLDRIGILGSIGFLIFAAWFIGWVFLGFHEGLYHVLFPISVVLMLAQWVRRVAR*
Ga0079218_130512341	3300007004	Agricultural Soil	MLGRIGILGFLGIIIFVAWFVGWIFLGFHDGLYHLLFPISVVLMVAQGVRRVAR*
Ga0075418_113837442	3300009100	Populus Rhizosphere	LDRIGILGFLGFLIFAAWFIGWIFLGFHDGLYHLLFPISVVLMVAQWVRRVAR*
Ga0114129_118109712	3300009147	Populus Rhizosphere	MLGRIGVLGFLGIIVFVAWAVGWIFFNLHEGTYHLLFLAAVVLMIAQGVTRVAR*
Ga0105242_105797801	3300009176	Miscanthus Rhizosphere	LGRIGVLGFLGIIVFVAWAIGWIFFNFHEGYYHLLFLAAVVLMIAQGVTRVAR*
Ga0105242_105938001	3300009176	Miscanthus Rhizosphere	REVHMLGRIGVLGFLGIIVFVAWAIGWIFLNLHDWHYHLLFLAAVVLMIAQGVNRVAR*
Ga0126313_111939472	3300009840	Serpentine Soil	MLGRIGILGFVGAIIFIGWFIGWVFFGFHDGLYHLLFPISVVLMMAQGVTRVAR*
Ga0126313_112274201	3300009840	Serpentine Soil	MLGRIGILGFVGAIIFVSWFIGWIFLGFHNGLYHLLFPIALVLMIA
Ga0126305_102632522	3300010036	Serpentine Soil	MLGRIGILVFVGAIIFVCWFIGWIFLGFHNGLYHLLFPIALVLMIAQGVTRVAR*
Ga0126304_100567243	3300010037	Serpentine Soil	MLDRIGILGFLGSLIFAAWFIGWIFLGFHDGLYHLLFPISVVLMLAQWVRRVAR*
Ga0126312_106399401	3300010041	Serpentine Soil	LGSLIFAAWFIGWIFLGFHDGLYHLLFPISVVLMLAQWVRRVAR*
Ga0126383_111606441	3300010398	Tropical Forest Soil	MVGRIGVLGFLGIIVFVGWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVNRVAR*
Ga0134127_118005541	3300010399	Terrestrial Soil	MLGRIGILGFVGFLIFVAWFVGWVFLGYHDGLYHVLFPISVVLMVAQGVRRVAR*
Ga0134127_125321992	3300010399	Terrestrial Soil	MLGRIGVLGFLGIIVFVGWAIGWIFFNLHDWHYHLLFLAAVVLMI
Ga0134123_118149702	3300010403	Terrestrial Soil	MLGRIGVLGFLGIIVFVAWAIGWIFFNLHEGHYHLLFVAAVVLMIAQGVNRVAR*
Ga0150985_1073832741	3300012212	Avena Fatua Rhizosphere	VQQEVHMLGRIGVLGFLGIIVFVAWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVIRVAR
Ga0150985_1214592581	3300012212	Avena Fatua Rhizosphere	MLGRIGILGFVGALIFIGWFIGWIFFGFHNGLYHLLFPISLVLMIAQGVTRVAR*
Ga0150985_1224230732	3300012212	Avena Fatua Rhizosphere	MLGRIGILGFVGAIIFVCWFIGWIFLGFHNGLYHLLFPIALILMIAQGVTRVAR*
Ga0157299_103247041	3300012899	Soil	MLGRIGVLGFLGIIVFVAWAIGWIFFNLHEGHYHLLFVAAVVLMIAQG
Ga0157288_100316851	3300012901	Soil	LGIIVFVAWAIGWIFFNLHEGHYHLLFVAAVVLMIAQGVTRVAR*
Ga0157282_103229231	3300012904	Soil	MLGRIGVLGFLGIIVFVAWAIGWIFFNLHEGHYHLLFVAAVVLMIAQGVTRVSR*
Ga0157298_103199972	3300012913	Soil	MLDRIGILGFLGFLIFAAWFIGWIFLGFHNGLYHLLFPISVVLMLAQGVRRVARRTE*
Ga0157297_101501991	3300012914	Soil	ARRCSMLGRIGILGFVGAIIFVCWFIGWIFLGFHNGLYHLLFPIALVLMIAQGVTRVAR*
Ga0164298_100075834	3300012955	Soil	MLGRIGVLGFLGIIVFVAWAIGWIFFNFHEGYYHLLFLAAVVLMVAQGVTRVAR*
Ga0164303_103121131	3300012957	Soil	MLDRIGVLGFLGLIVFVAWAIGWIFFGFHEGYYHLLFALAAVLMIAQGVRRVAR*
Ga0164307_105555911	3300012987	Soil	MLGRIGVLGFLGIIVFVAWAIGWIFFNFHEGYYHLLFLAAVVLMVAQ
Ga0163162_125699462	3300013306	Switchgrass Rhizosphere	MLGRIGVLGFLGIIVFVAWAIGWIFFILHEGHYHLLFVAAVVLMIAQGVTRVAR*
Ga0157377_107120771	3300014745	Miscanthus Rhizosphere	MLDRIGILGFLGFLIFAAWFIGWIFLGFHDGLYHLLFPISVVLLLAQGVRRVAR
Ga0132258_104001304	3300015371	Arabidopsis Rhizosphere	MLGRIGILGFLGLLVFVAWAIGWLFLGFHEGLYHLWFVVAVVLMIAQGVRRIAR*
Ga0132258_106007562	3300015371	Arabidopsis Rhizosphere	MLGRIGILGFVGALIFIGWFVGWIFFGFHDGLYHLLFPISVVLMIAQGVTRVAR*
Ga0132258_112019793	3300015371	Arabidopsis Rhizosphere	MLDRIGILGFLGLIVFIAWAVGWLFFGFHEGLYHLWLAVAAVLMIAQGVRRIAR*
Ga0132258_115888422	3300015371	Arabidopsis Rhizosphere	MLGRIGVLGFLGIILFVAWAVGWIFFNLHEGHYHLLFLAAVVLMIAQGVTRVAR*
Ga0132258_128353902	3300015371	Arabidopsis Rhizosphere	MLGRIGILGFLGFIIFVAWFIGWIFFGFHEGLYHLLFPIAVVLMVAQGVRRVAR*
Ga0132256_1011681512	3300015372	Arabidopsis Rhizosphere	MLGRIGVLGFLGIIVFVAWAIGWIGFGLHEGHYHLLFVLAVVLMIAQGVRRVAR*
Ga0132256_1034047851	3300015372	Arabidopsis Rhizosphere	MLGRIGILGFVGALIFIGWFVGWIFFGFHDGLYHLLFPISVVLM
Ga0132257_1001085502	3300015373	Arabidopsis Rhizosphere	MLGRIGVLGFLGIIVFVAWAIGWIGFGLHEGHYHLLFVLAVALMIAQGVRRVAR*
Ga0132257_1004529092	3300015373	Arabidopsis Rhizosphere	MLDRIGVLGFLGLIIFVAWAIGWIFLGFHEGYYHVLFPLAAVLLIAQGVRRVAR*
Ga0132257_1024033812	3300015373	Arabidopsis Rhizosphere	MLGRIGILGFVGAIIFVCWFIGWIFLGFHNGLYHLLFPISLVLMIAQGVTRVAR*
Ga0132255_1010915791	3300015374	Arabidopsis Rhizosphere	MLGRIGVLGFLGIIVFVAWAIGWIGFGLHEGHYHLLFVVAVVLMIAQGVRRVAR*
Ga0184611_12842932	3300018067	Groundwater Sediment	LGRIGILGFVGAIIFVCWFIGWIFLGFHNGLYHLLFPIALVLMIAQGVTRVAR
Ga0190265_127890482	3300018422	Soil	MLDRIGILGFLGFLIFAGWFIGWVFLGFHDGLYHLLFPIAVVLMVAQGVRRV
Ga0190270_111368652	3300018469	Soil	MLDRIGILGILGILIFCAWFIGWVFLGFHDGLYHVLFPVSVVLMVVQGVRRVAR
Ga0190274_102283312	3300018476	Soil	MLDRIGILGFLGFLIFAAWFIGWIFLGFHDGLYHLLFPISVVLMVAQWVRRVAR
Ga0190264_110313032	3300019377	Soil	MLDRIGILGFLGIIIFIAWCGRWLFLDFRAGLSQLLFPISVVLMVAQGVRRVAR
Ga0206353_114182531	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MLGRIDVLGFLGIIVFVGWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVTRIAR
Ga0182009_100596251	3300021445	Soil	IGVLGFLGIIVFVGWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVTRIAR
Ga0182009_101460352	3300021445	Soil	MLGRIGILGFLGAIIFLAWFIGWIFFGFHDGLYHLLFPISVVLMMAQGVRRVAR
Ga0222622_100834962	3300022756	Groundwater Sediment	MLARIGILGFVGAIIFVCWFIGWIFLGFHNGLYHLLFPIALVLMIAQGVTRVAR
Ga0247794_102616262	3300024055	Soil	MLGRIGVLGFLGIIVFVGWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVTRIAR
Ga0207697_100051044	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MLGRIGVLGFLGIIVFVAWAIGWIFFNLHEGHYHLLFVAAVVLMIAQGVTRVAR
Ga0207682_103692692	3300025893	Miscanthus Rhizosphere	MLGRIGILGFLGAIIFLGWFIGWIFFGFHDGLYHLLFPISVVLMMAQGVTRVAR
Ga0207645_109335591	3300025907	Miscanthus Rhizosphere	GFVGAIIFVCWFIGWIFLGFHNGLYHLLFPIALVLMIAQGVTRVAR
Ga0207643_100351762	3300025908	Miscanthus Rhizosphere	MLDRIGIPGFLGFLIFAAWFIGWIFLGFHDGLYHLLFPISVVLMVAQWVRRVAR
Ga0207650_117717542	3300025925	Switchgrass Rhizosphere	MLGRIGILGFLGAIIFLGWFIGWIFFGFHNGLYHLLFPISVVLMMAQGVRRVAR
Ga0207659_107278082	3300025926	Miscanthus Rhizosphere	MLGRIGILGFLGAIIFLAWFIGWIFLGFHNGLYHLLFPISVVLMMAQGVRRVAR
Ga0207644_110502981	3300025931	Switchgrass Rhizosphere	MLGRIGVLGFLGIIVFVAWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVIRVAR
Ga0207686_105322762	3300025934	Miscanthus Rhizosphere	MLGRIGVLGFLGIIVFVAWAIGWIFLNLHDWHYHLLFLAAVVLMIAQGVNRVAR
Ga0207686_115811001	3300025934	Miscanthus Rhizosphere	MLGRIGVLGFLGIIVFVAWAIGWIFFNFHEGHYHLLFLAAVVLMIAQGVTRVAR
Ga0207670_116916711	3300025936	Switchgrass Rhizosphere	MLGRIGVLGFLGIIVFVVWAIGWIFFNFHDWHYHLLFLAAVVLMIAQGVNRVAR
Ga0207691_100808863	3300025940	Miscanthus Rhizosphere	MLDRIGILGFLGFLIFAAWFIGWIFLGFHDGLYHLLFPISVVLMLAQGVRRVARRTE
Ga0207711_103639902	3300025941	Switchgrass Rhizosphere	MLGRIGILGFVGAIIFVCWFIGWIFLGFHNGLYHLLFPIALVLMIAQGVT
Ga0207651_111338952	3300025960	Switchgrass Rhizosphere	MLGRIGVLGFLGFIVFVAWAIGWIFFNLHEGHYHLLFVAAVVLMIAQGVT
Ga0207702_108422682	3300026078	Corn Rhizosphere	MLGRIGVLGLLGIIVFVGWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVTR
Ga0207702_110899821	3300026078	Corn Rhizosphere	NMLGRIGVLGFLGIIVFVGWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVTRIAR
Ga0207702_119843422	3300026078	Corn Rhizosphere	MLGRIGVLGFLGIIVFVGWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVTRIA
Ga0207641_110480702	3300026088	Switchgrass Rhizosphere	PACRREVNMLGRIGVLGFLGIIVFVGWAIGWIFFNLHDWHYHLLFLAAVVLMIAQGVTRIAR
Ga0207648_101662312	3300026089	Miscanthus Rhizosphere	MLGRIGVLGFLGIIVFVAWAIGWIFFNFHEGYYHLLFLAAVVLMIAQGVTRVAR
Ga0207648_119801931	3300026089	Miscanthus Rhizosphere	MLDRIGILGFLGFLIFAAWFIGWIFLGFHNGLYHLLFPISVVLMLAQGVRRVARRAE
Ga0207698_103425741	3300026142	Corn Rhizosphere	REVHMLGRIGVLGFLGIIVFVVWAIGWIFFNFHDWHYHLLFLAAVVLMIAQGVNRVAR
Ga0207698_105383151	3300026142	Corn Rhizosphere	MLGRIGILGFVGAIIFVCWFIGWIFLGFHNGLYHLLFPIALVLMIAQGVTR
Ga0209481_104785412	3300027880	Populus Rhizosphere	MLDRIGILGFLGIIIFVAWFVGWIFLGFHDGLYHLLFPVSVVLMVAQGVRRVAR
Ga0209486_104670241	3300027886	Agricultural Soil	MFDRIGILGILGIVIFVAWFVGWVFLGFHDGLYHVLFPIAVVLMVAQGVRRVAR
Ga0207428_102188782	3300027907	Populus Rhizosphere	MLGRIGVLGFLGIIVFVAWAIGWIFFNLHEGPYHLLFLAAVVLMIAQGVTRVAR
Ga0209382_100310424	3300027909	Populus Rhizosphere	MFDRIGILGILGFIIFVAWFVGWVFLGFHDGLYHVLFPIAVVLMVAQGVRRVAR
Ga0209382_100426823	3300027909	Populus Rhizosphere	MFDRIGILGFLGIIIFLAWFIGWVFLGFHDGLYHVLFPVSVVLMVAQGVRRVAR
Ga0209382_100673513	3300027909	Populus Rhizosphere	MLGRIGVLGFLGIIVFVAWAIGWIGFGLHEGHYHLLFVVAVALMIAQGVRRVAR
Ga0209382_108837542	3300027909	Populus Rhizosphere	MLGRIGVLGVLGIIVFVAWAVGWIFFGLHEGHYHLLFVVAVVLMVAQGVRRVAR
Ga0209382_113439392	3300027909	Populus Rhizosphere	MLGRIGILGFVGFLIFAAWFIGWVFLGFHDGLYHLLFPVSVVLMMAQWVRRVAR
Ga0268265_115405251	3300028380	Switchgrass Rhizosphere	MLARIGILGFLGLIIFVAWFVGWVFLGFHEGMYHLLFPVSVVLMIAQGVRRVAR
Ga0268265_121469562	3300028380	Switchgrass Rhizosphere	MLARIGVLGFLGFLIFVAWFVGWIFLGYHDGLYHVLFPISVVLMVAQG
Ga0307277_102069022	3300028881	Soil	MLGRIGVLGFLGFAIFVGWFVGWIFFGLHNGLYHLLFPISVVLMIAQGVTRVAR
Ga0268240_101135142	3300030496	Soil	MLGRIGVLGFLGIIVFVAWAIGWIFFNLHEGHYHLLFLAAVVLMIAQGVTRVAR
Ga0307498_103546641	3300031170	Soil	MLDRIGVLGFLGLIIFVAWAIGWIFFGFHEGYYHLLFPLAAVLMIAQGVRRVAR
Ga0307408_1000046745	3300031548	Rhizosphere	MLGRIGVLGFLGIIVFVAWAIGWIFFNLHEGPYHLLFVAAVVLMIAQGVTRVAR
Ga0307408_1022346981	3300031548	Rhizosphere	HMLGRIGILGFLGFLIFVAWFVGWIFLGFHEGLYHVLFPISVVLMVAQGVRRVAR
Ga0310813_108194182	3300031716	Soil	MLGRIGVLGFLGLIVFVAWAIGWLVFGLHEGHYHLWLAVAAVLMIAQGVRRVAR
Ga0307405_101877502	3300031731	Rhizosphere	MLDRIGILGILGFLIFAAWFIGWIFLGFHDGLYHLLFPISVVLMLAQWVRRVAR
Ga0307405_110564811	3300031731	Rhizosphere	MLGRIGILGFVGFLIFVAWFVGWIFFGFHEGLYHVLFPISVVLMVAQGVRRVAR
Ga0307468_1004808552	3300031740	Hardwood Forest Soil	MLGRIGVLGFLGIIIFVAWAIGWIFFGLHEGHYHLLFVVAVVLMIAQGVTRVAR
Ga0307413_102795822	3300031824	Rhizosphere	MLGRIGILGFLGFIIFVAWFVGWIFLGFHDGLYHLLFPISVVLMVAQ
(restricted) Ga0255338_100019164	3300031825	Sandy Soil	MLERIGILGMLGFIIFVAWFIGWVFLGFHNGLYHVLFPISVVLMVAQGVRRVAR
Ga0307410_104269312	3300031852	Rhizosphere	MLGRIGILGFLGFIIFVAWFVGWIFLGFHDGLYHLLFPISVVLMVAQGVRRVAR
Ga0310904_102197502	3300031854	Soil	MLGRIGVLGFLGIIVFVAWAIGWIFFNLHEGHYHLLFVAAVVLMIAQGVTR
Ga0307406_118722201	3300031901	Rhizosphere	RRVRGGRRTMLGRIGILGFVGFLIFAAWFIGWVFLGFHDGLYHLLFPVSVVLMMAQWVRRVAR
Ga0308174_104913572	3300031939	Soil	MLGRIGILGFVGALIFIGWFVGWIFFGFHDGLYHLLFPVSVVLMIAQGVTRVAR
Ga0308176_128326371	3300031996	Soil	VLDRIGIPGFLGLILFIAWFVGWVFLGFHAHGYHLLFLLSVVLMIAQGVRRVAR
Ga0310896_104809172	3300032211	Soil	MLGRIGVLGFLGIIVFVAWAIGWIFFNLHEGHYHLLFVAAVVLMIALGVTRVAR
Ga0310811_105618012	3300033475	Soil	MLGRIGILGFLGAIIFFGFHDGLYHLLFPISVVLMMAQGVRRVAR
Ga0316628_1032768591	3300033513	Soil	MLGRIGILGFLGIIVFAGWFVGWVFFGLHDGLYHLLFPISVVLMIAQGVTRVAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters