NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F036224

Metagenome / Metatranscriptome Family F036224

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F036224
Family Type Metagenome / Metatranscriptome
Number of Sequences 170
Average Sequence Length 67 residues
Representative Sequence MAEDAARELPNLPLEDALQLVHLYAERGSPKYERAAMRWLERYLIEGTPRLQHFAEVAASLAKRES
Number of Associated Samples 138
Number of Associated Scaffolds 170

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 55.95 %
% of genes near scaffold ends (potentially truncated) 45.88 %
% of genes from short scaffolds (< 2000 bps) 86.47 %
Associated GOLD sequencing projects 132
AlphaFold2 3D model prediction Yes
3D model pTM-score0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (93.529 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(24.118 % of family members)
Environment Ontology (ENVO) Unclassified
(25.882 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(37.647 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 50.00%    β-sheet: 0.00%    Coil/Unstructured: 50.00%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.72
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
a.128.1.0: Terpenoid synthasesd5dz2a_5dz20.71
a.128.1.0: Terpenoid synthasesd5dz2a_5dz20.71
a.7.6.1: Ribosomal protein S20d2qalt12qal0.7
a.7.6.1: Ribosomal protein S20d2qalt12qal0.7
f.67.1.1: Bestropin channel-liked6vx8a_6vx80.69
f.67.1.1: Bestropin channel-liked6vx8a_6vx80.69
a.24.1.1: Apolipoproteind1gs9a_1gs90.68
a.24.9.1: alpha-catenin/vinculin-liked1l7ca11l7c0.68
a.24.1.1: Apolipoproteind1gs9a_1gs90.68
a.24.9.1: alpha-catenin/vinculin-liked1l7ca11l7c0.68


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 170 Family Scaffolds
PF00903Glyoxalase 4.12
PF07676PD40 2.94
PF04964Flp_Fap 1.76
PF05345He_PIG 1.76
PF07883Cupin_2 1.76
PF06224HTH_42 1.76
PF00496SBP_bac_5 1.18
PF03083MtN3_slv 1.18
PF00107ADH_zinc_N 1.18
PF00561Abhydrolase_1 1.18
PF12995DUF3879 0.59
PF05448AXE1 0.59
PF11376DUF3179 0.59
PF13649Methyltransf_25 0.59
PF00999Na_H_Exchanger 0.59
PF14329DUF4386 0.59
PF07279DUF1442 0.59
PF01680SOR_SNZ 0.59
PF07885Ion_trans_2 0.59
PF14470bPH_3 0.59
PF07690MFS_1 0.59
PF12844HTH_19 0.59
PF13786DUF4179 0.59
PF01068DNA_ligase_A_M 0.59
PF10604Polyketide_cyc2 0.59
PF07040DUF1326 0.59
PF06803DUF1232 0.59
PF00565SNase 0.59
PF13328HD_4 0.59
PF01243Putative_PNPOx 0.59
PF05995CDO_I 0.59
PF07452CHRD 0.59
PF02494HYR 0.59
PF13561adh_short_C2 0.59
PF12802MarR_2 0.59
PF08281Sigma70_r4_2 0.59
PF12680SnoaL_2 0.59
PF04542Sigma70_r2 0.59
PF03050DDE_Tnp_IS66 0.59
PF02661Fic 0.59
PF14659Phage_int_SAM_3 0.59
PF00805Pentapeptide 0.59
PF00027cNMP_binding 0.59
PF08922DUF1905 0.59
PF00011HSP20 0.59
PF04226Transgly_assoc 0.59
PF13189Cytidylate_kin2 0.59
PF08450SGL 0.59

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 170 Family Scaffolds
COG3847Flp pilus assembly protein, pilin FlpExtracellular structures [W] 1.76
COG3214DNA glycosylase YcaQ, repair of DNA interstrand crosslinksReplication, recombination and repair [L] 1.76
COG4095Sugar transporter, SemiSWEET family, contains PQ motifCarbohydrate transport and metabolism [G] 1.18
COG5588Uncharacterized conserved protein, DUF1326 domainFunction unknown [S] 0.59
COG0025NhaP-type Na+/H+ or K+/H+ antiporterInorganic ion transport and metabolism [P] 0.59
COG5553Predicted metal-dependent enzyme of the double-stranded beta helix superfamilyGeneral function prediction only [R] 0.59
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 0.59
COG4651Predicted Kef-type K+ transport protein, K+/H+ antiporter domainInorganic ion transport and metabolism [P] 0.59
COG3458Cephalosporin-C deacetylase or related acetyl esteraseSecondary metabolites biosynthesis, transport and catabolism [Q] 0.59
COG3436TransposaseMobilome: prophages, transposons [X] 0.59
COG3391DNA-binding beta-propeller fold protein YncEGeneral function prediction only [R] 0.59
COG3386Sugar lactone lactonase YvrECarbohydrate transport and metabolism [G] 0.59
COG3339Uncharacterized membrane protein YkvA, DUF1232 familyFunction unknown [S] 0.59
COG3263NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domainsEnergy production and conversion [C] 0.59
COG3004Na+/H+ antiporter NhaAEnergy production and conversion [C] 0.59
COG2261Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein familyGeneral function prediction only [R] 0.59
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 0.59
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.59
COG1506Dipeptidyl aminopeptidase/acylaminoacyl peptidaseAmino acid transport and metabolism [E] 0.59
COG1423ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) familyReplication, recombination and repair [L] 0.59
COG1357Uncharacterized conserved protein YjbI, contains pentapeptide repeatsFunction unknown [S] 0.59
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 0.59
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 0.59
COG0475Kef-type K+ transport system, membrane component KefBInorganic ion transport and metabolism [P] 0.59
COG0214Pyridoxal 5'-phosphate synthase subunit PdxSCoenzyme transport and metabolism [H] 0.59
COG0071Small heat shock protein IbpA, HSP20 familyPosttranslational modification, protein turnover, chaperones [O] 0.59


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms93.53 %
UnclassifiedrootN/A6.47 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2067725001|GPWNP_F5MPXY301BK96QNot Available518Open in IMG/M
2170459014|G1P06HT01BNVN6All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300000858|JGI10213J12805_10422740All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium701Open in IMG/M
3300000953|JGI11615J12901_10276862All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1831Open in IMG/M
3300000956|JGI10216J12902_100460310All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria975Open in IMG/M
3300000956|JGI10216J12902_100958713All Organisms → cellular organisms → Bacteria732Open in IMG/M
3300000956|JGI10216J12902_103565723All Organisms → cellular organisms → Bacteria1378Open in IMG/M
3300000956|JGI10216J12902_112733034All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium886Open in IMG/M
3300002122|C687J26623_10133509All Organisms → cellular organisms → Bacteria683Open in IMG/M
3300003995|Ga0055438_10185455All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059628Open in IMG/M
3300004019|Ga0055439_10063802All Organisms → cellular organisms → Bacteria1029Open in IMG/M
3300004058|Ga0055498_10114222All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei560Open in IMG/M
3300004156|Ga0062589_101259848All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium712Open in IMG/M
3300004463|Ga0063356_101921987All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria893Open in IMG/M
3300004480|Ga0062592_100007897All Organisms → cellular organisms → Bacteria4026Open in IMG/M
3300004643|Ga0062591_100307121All Organisms → cellular organisms → Bacteria1253Open in IMG/M
3300005161|Ga0066807_1016811All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria721Open in IMG/M
3300005162|Ga0066814_10067682All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059620Open in IMG/M
3300005168|Ga0066809_10178543All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059564Open in IMG/M
3300005169|Ga0066810_10013373All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1258Open in IMG/M
3300005294|Ga0065705_10297126All Organisms → cellular organisms → Bacteria1062Open in IMG/M
3300005356|Ga0070674_100356303All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1183Open in IMG/M
3300005471|Ga0070698_102063186All Organisms → cellular organisms → Bacteria524Open in IMG/M
3300006572|Ga0074051_11712141All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2670Open in IMG/M
3300006573|Ga0074055_10609865All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium652Open in IMG/M
3300006577|Ga0074050_12036386All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium806Open in IMG/M
3300006579|Ga0074054_10170424All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1165Open in IMG/M
3300006580|Ga0074049_12786918All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium831Open in IMG/M
3300006581|Ga0074048_10064529All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1770Open in IMG/M
3300006844|Ga0075428_100332826All Organisms → cellular organisms → Bacteria1631Open in IMG/M
3300006844|Ga0075428_100503302All Organisms → cellular organisms → Bacteria1296Open in IMG/M
3300006871|Ga0075434_100986711All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales856Open in IMG/M
3300006918|Ga0079216_10259267All Organisms → cellular organisms → Bacteria999Open in IMG/M
3300006969|Ga0075419_10167234All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1444Open in IMG/M
3300006969|Ga0075419_10402169All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria938Open in IMG/M
3300007004|Ga0079218_11886864All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria675Open in IMG/M
3300007004|Ga0079218_13531343All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria531Open in IMG/M
3300009087|Ga0105107_11004455All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300009094|Ga0111539_11723409All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium727Open in IMG/M
3300009100|Ga0075418_11591705All Organisms → cellular organisms → Bacteria709Open in IMG/M
3300009147|Ga0114129_12217207All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium661Open in IMG/M
3300009148|Ga0105243_10233784All Organisms → cellular organisms → Bacteria1632Open in IMG/M
3300009157|Ga0105092_10452695All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium733Open in IMG/M
3300009805|Ga0105079_1028187All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium578Open in IMG/M
3300009811|Ga0105084_1037254All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium842Open in IMG/M
3300009817|Ga0105062_1083583All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium617Open in IMG/M
3300009837|Ga0105058_1089169All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium716Open in IMG/M
3300010362|Ga0126377_10969150All Organisms → cellular organisms → Bacteria916Open in IMG/M
3300010362|Ga0126377_11085781All Organisms → cellular organisms → Bacteria869Open in IMG/M
3300010391|Ga0136847_10587330Not Available2179Open in IMG/M
3300010399|Ga0134127_10844034All Organisms → cellular organisms → Bacteria968Open in IMG/M
3300011412|Ga0137424_1105657All Organisms → cellular organisms → Bacteria580Open in IMG/M
3300012021|Ga0120192_10013382All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1225Open in IMG/M
3300012045|Ga0136623_10016421All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3110Open in IMG/M
3300012093|Ga0136632_10066314All Organisms → cellular organisms → Bacteria1667Open in IMG/M
3300012198|Ga0137364_10662360Not Available787Open in IMG/M
3300012204|Ga0137374_10441106All Organisms → cellular organisms → Bacteria1024Open in IMG/M
3300012232|Ga0137435_1191824All Organisms → cellular organisms → Bacteria627Open in IMG/M
3300012527|Ga0136633_1188717All Organisms → cellular organisms → Bacteria776Open in IMG/M
3300012684|Ga0136614_10140852All Organisms → cellular organisms → Bacteria1827Open in IMG/M
3300012891|Ga0157305_10123641Not Available666Open in IMG/M
3300012898|Ga0157293_10087892All Organisms → cellular organisms → Bacteria776Open in IMG/M
3300012910|Ga0157308_10187909All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria688Open in IMG/M
3300012911|Ga0157301_10469766All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium503Open in IMG/M
3300012912|Ga0157306_10049796All Organisms → cellular organisms → Bacteria1048Open in IMG/M
3300012914|Ga0157297_10177698All Organisms → cellular organisms → Bacteria718Open in IMG/M
3300012957|Ga0164303_11242545All Organisms → cellular organisms → Bacteria548Open in IMG/M
3300012961|Ga0164302_11356140All Organisms → cellular organisms → Bacteria578Open in IMG/M
3300014267|Ga0075313_1159572All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300014271|Ga0075326_1231465All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium563Open in IMG/M
3300014326|Ga0157380_10620412All Organisms → cellular organisms → Bacteria → Terrabacteria group1073Open in IMG/M
3300014969|Ga0157376_10578451All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1115Open in IMG/M
3300014969|Ga0157376_11040327All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium843Open in IMG/M
3300015077|Ga0173483_10492602All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium651Open in IMG/M
3300015371|Ga0132258_10004835All Organisms → cellular organisms → Bacteria26249Open in IMG/M
3300015371|Ga0132258_10044928All Organisms → cellular organisms → Bacteria10065Open in IMG/M
3300015371|Ga0132258_10658126All Organisms → cellular organisms → Bacteria2634Open in IMG/M
3300015372|Ga0132256_102201686All Organisms → cellular organisms → Bacteria656Open in IMG/M
3300015372|Ga0132256_103397538All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium535Open in IMG/M
3300015374|Ga0132255_100032732All Organisms → cellular organisms → Bacteria6602Open in IMG/M
3300017695|Ga0180121_10121761All Organisms → cellular organisms → Bacteria945Open in IMG/M
3300018031|Ga0184634_10162137All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1007Open in IMG/M
3300018031|Ga0184634_10251917All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium809Open in IMG/M
3300018056|Ga0184623_10328413All Organisms → cellular organisms → Bacteria687Open in IMG/M
3300018064|Ga0187773_11047699All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300018073|Ga0184624_10131410All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1091Open in IMG/M
3300018073|Ga0184624_10263119All Organisms → cellular organisms → Bacteria774Open in IMG/M
3300018073|Ga0184624_10348544Not Available663Open in IMG/M
3300018074|Ga0184640_10261518All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium785Open in IMG/M
3300018074|Ga0184640_10411784All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300018078|Ga0184612_10256337All Organisms → cellular organisms → Bacteria903Open in IMG/M
3300018079|Ga0184627_10101790All Organisms → cellular organisms → Bacteria1516Open in IMG/M
3300018422|Ga0190265_10460323All Organisms → cellular organisms → Bacteria1379Open in IMG/M
3300018432|Ga0190275_11122812All Organisms → cellular organisms → Bacteria860Open in IMG/M
3300018469|Ga0190270_10003969All Organisms → cellular organisms → Bacteria7479Open in IMG/M
3300018469|Ga0190270_10004923All Organisms → cellular organisms → Bacteria6911Open in IMG/M
3300018469|Ga0190270_10093247All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.2279Open in IMG/M
3300018469|Ga0190270_10095174All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2261Open in IMG/M
3300018469|Ga0190270_10242533All Organisms → cellular organisms → Bacteria1561Open in IMG/M
3300018469|Ga0190270_11800749All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium668Open in IMG/M
3300018469|Ga0190270_12540763All Organisms → cellular organisms → Bacteria574Open in IMG/M
3300018481|Ga0190271_11135954All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium904Open in IMG/M
3300019356|Ga0173481_10070911All Organisms → cellular organisms → Bacteria1260Open in IMG/M
3300019356|Ga0173481_10797077All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium522Open in IMG/M
3300019884|Ga0193741_1090872Not Available783Open in IMG/M
3300020005|Ga0193697_1015599All Organisms → cellular organisms → Bacteria1863Open in IMG/M
3300020016|Ga0193696_1146099All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium586Open in IMG/M
3300020020|Ga0193738_1095694All Organisms → cellular organisms → Bacteria853Open in IMG/M
3300022756|Ga0222622_10037305All Organisms → cellular organisms → Bacteria2646Open in IMG/M
3300022756|Ga0222622_10932996All Organisms → cellular organisms → Bacteria637Open in IMG/M
3300022756|Ga0222622_11098870All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium585Open in IMG/M
3300022898|Ga0247745_1087366All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium528Open in IMG/M
3300022915|Ga0247790_10066008All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium853Open in IMG/M
3300025164|Ga0209521_10283240All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia950Open in IMG/M
3300025167|Ga0209642_10014810All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4659Open in IMG/M
3300025325|Ga0209341_10603502All Organisms → cellular organisms → Bacteria860Open in IMG/M
3300025327|Ga0209751_10301171All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1351Open in IMG/M
3300025558|Ga0210139_1004069All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2706Open in IMG/M
3300025927|Ga0207687_10842619All Organisms → cellular organisms → Bacteria783Open in IMG/M
3300026357|Ga0256810_1001012All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2101Open in IMG/M
3300026894|Ga0207980_1009703All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300027056|Ga0209879_1038029All Organisms → cellular organisms → Bacteria792Open in IMG/M
3300027056|Ga0209879_1064881All Organisms → cellular organisms → Bacteria582Open in IMG/M
3300027523|Ga0208890_1011622All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1176Open in IMG/M
(restricted) 3300027799|Ga0233416_10094592All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1020Open in IMG/M
3300027909|Ga0209382_11223046All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium767Open in IMG/M
3300027949|Ga0209860_1027695All Organisms → cellular organisms → Bacteria755Open in IMG/M
(restricted) 3300028043|Ga0233417_10541549All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300028587|Ga0247828_11014028Not Available543Open in IMG/M
3300028589|Ga0247818_11086610All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300028592|Ga0247822_10812095All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300028755|Ga0307316_10314026All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium574Open in IMG/M
3300028771|Ga0307320_10459948All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300028787|Ga0307323_10149064All Organisms → cellular organisms → Bacteria844Open in IMG/M
3300028793|Ga0307299_10345817All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300028814|Ga0307302_10138188All Organisms → cellular organisms → Bacteria1177Open in IMG/M
3300028819|Ga0307296_10477264All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium682Open in IMG/M
3300028878|Ga0307278_10023291All Organisms → cellular organisms → Bacteria2852Open in IMG/M
3300028880|Ga0307300_10143285All Organisms → cellular organisms → Bacteria748Open in IMG/M
3300030006|Ga0299907_10222854All Organisms → cellular organisms → Bacteria1553Open in IMG/M
3300030006|Ga0299907_10369110All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1159Open in IMG/M
3300030619|Ga0268386_10433246Not Available916Open in IMG/M
3300030902|Ga0308202_1029825All Organisms → cellular organisms → Bacteria913Open in IMG/M
3300030903|Ga0308206_1116065All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300031170|Ga0307498_10003872All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2536Open in IMG/M
3300031170|Ga0307498_10032455All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1296Open in IMG/M
3300031226|Ga0307497_10692377All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300031544|Ga0318534_10092260All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1729Open in IMG/M
3300031562|Ga0310886_10938897All Organisms → cellular organisms → Bacteria → Terrabacteria group552Open in IMG/M
3300031576|Ga0247727_10049917All Organisms → cellular organisms → Bacteria5135Open in IMG/M
3300031576|Ga0247727_10884960All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium629Open in IMG/M
3300031719|Ga0306917_11336194All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium554Open in IMG/M
3300031858|Ga0310892_10279071All Organisms → cellular organisms → Bacteria1044Open in IMG/M
3300031940|Ga0310901_10314826Not Available661Open in IMG/M
3300031940|Ga0310901_10589674All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium508Open in IMG/M
3300031997|Ga0315278_10171423All Organisms → cellular organisms → Bacteria2225Open in IMG/M
3300032122|Ga0310895_10362942All Organisms → cellular organisms → Bacteria701Open in IMG/M
3300032180|Ga0307471_104237902All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300032397|Ga0315287_12250711All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300032516|Ga0315273_10295481All Organisms → cellular organisms → Bacteria2199Open in IMG/M
3300032516|Ga0315273_11090610All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1014Open in IMG/M
3300032516|Ga0315273_11132550All Organisms → cellular organisms → Bacteria991Open in IMG/M
3300032516|Ga0315273_11803888All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium736Open in IMG/M
3300033551|Ga0247830_10808490All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium746Open in IMG/M
3300034115|Ga0364945_0086743All Organisms → cellular organisms → Bacteria907Open in IMG/M
3300034150|Ga0364933_192667All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300034164|Ga0364940_0161834All Organisms → cellular organisms → Bacteria648Open in IMG/M
3300034177|Ga0364932_0198890All Organisms → cellular organisms → Bacteria761Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil24.12%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.65%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment5.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil5.29%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere5.29%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment4.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.12%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand4.12%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand2.94%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands2.35%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil2.35%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment2.35%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.35%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.76%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.76%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.18%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.18%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.18%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.18%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.18%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.18%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands1.18%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm1.18%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.18%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.18%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.18%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.18%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment0.59%
SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment0.59%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.59%
TerrestrialEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial0.59%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.59%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.59%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.59%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.59%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.59%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.59%
Switchgrass, Maize And Mischanthus LitterEngineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter0.59%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2067725001Soil microbial communities from Great Prairies - Wisconsin Native Prairie soilEnvironmentalOpen in IMG/M
2170459014Litter degradation PV2EngineeredOpen in IMG/M
3300000858Soil microbial communities from Great Prairies - Wisconsin Native Prairie soilEnvironmentalOpen in IMG/M
3300000953Soil microbial communities from Great Prairies - Kansas Corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300002122Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_2EnvironmentalOpen in IMG/M
3300003995Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2EnvironmentalOpen in IMG/M
3300004019Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2EnvironmentalOpen in IMG/M
3300004058Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005161Soil and rhizosphere microbial communities from Laval, Canada - mgLPAEnvironmentalOpen in IMG/M
3300005162Soil and rhizosphere microbial communities from Laval, Canada - mgLABEnvironmentalOpen in IMG/M
3300005168Soil and rhizosphere microbial communities from Laval, Canada - mgLPCEnvironmentalOpen in IMG/M
3300005169Soil and rhizosphere microbial communities from Laval, Canada - mgHPAEnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005333Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300006572Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006573Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006577Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006579Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006580Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006581Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006918Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100EnvironmentalOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009087Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009805Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_0_10EnvironmentalOpen in IMG/M
3300009811Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30EnvironmentalOpen in IMG/M
3300009817Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20EnvironmentalOpen in IMG/M
3300009837Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010391Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300011412Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2EnvironmentalOpen in IMG/M
3300012021Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1EnvironmentalOpen in IMG/M
3300012045Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)EnvironmentalOpen in IMG/M
3300012093Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012232Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2EnvironmentalOpen in IMG/M
3300012527Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ83 (22.06)EnvironmentalOpen in IMG/M
3300012684Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)EnvironmentalOpen in IMG/M
3300012891Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2EnvironmentalOpen in IMG/M
3300012898Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1EnvironmentalOpen in IMG/M
3300012910Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2EnvironmentalOpen in IMG/M
3300012911Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2EnvironmentalOpen in IMG/M
3300012912Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2EnvironmentalOpen in IMG/M
3300012914Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2EnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300014267Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D1EnvironmentalOpen in IMG/M
3300014271Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2EnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017695Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2)EnvironmentalOpen in IMG/M
3300018031Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1EnvironmentalOpen in IMG/M
3300018056Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1EnvironmentalOpen in IMG/M
3300018064Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018074Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2EnvironmentalOpen in IMG/M
3300018078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coexEnvironmentalOpen in IMG/M
3300018079Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018432Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300019884Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2EnvironmentalOpen in IMG/M
3300020005Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2EnvironmentalOpen in IMG/M
3300020016Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1EnvironmentalOpen in IMG/M
3300020020Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1EnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300022898Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5EnvironmentalOpen in IMG/M
3300022915Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4EnvironmentalOpen in IMG/M
3300025164Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4EnvironmentalOpen in IMG/M
3300025167Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)EnvironmentalOpen in IMG/M
3300025325Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)EnvironmentalOpen in IMG/M
3300025327Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)EnvironmentalOpen in IMG/M
3300025558Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026357Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PU5EnvironmentalOpen in IMG/M
3300026894Soil and rhizosphere microbial communities from Laval, Canada - mgLPA (SPAdes)EnvironmentalOpen in IMG/M
3300027056Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)EnvironmentalOpen in IMG/M
3300027523Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)EnvironmentalOpen in IMG/M
3300027799 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MGEnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300027949Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50 (SPAdes)EnvironmentalOpen in IMG/M
3300028043 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0.5_MGEnvironmentalOpen in IMG/M
3300028587Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3EnvironmentalOpen in IMG/M
3300028589Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1EnvironmentalOpen in IMG/M
3300028592Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30EnvironmentalOpen in IMG/M
3300028755Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356EnvironmentalOpen in IMG/M
3300028771Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369EnvironmentalOpen in IMG/M
3300028787Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381EnvironmentalOpen in IMG/M
3300028793Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300028878Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117EnvironmentalOpen in IMG/M
3300028880Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181EnvironmentalOpen in IMG/M
3300030006Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67EnvironmentalOpen in IMG/M
3300030619Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)EnvironmentalOpen in IMG/M
3300030902Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030903Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031170Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_SEnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031576Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031940Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2EnvironmentalOpen in IMG/M
3300031997Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0EnvironmentalOpen in IMG/M
3300032039Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21EnvironmentalOpen in IMG/M
3300032122Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032397Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0EnvironmentalOpen in IMG/M
3300032516Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0EnvironmentalOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M
3300034115Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17EnvironmentalOpen in IMG/M
3300034150Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17EnvironmentalOpen in IMG/M
3300034164Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17EnvironmentalOpen in IMG/M
3300034177Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GPWNP_008801702067725001SoilMAEDAARELPNLSLQDALQLVHLYFERGSPKAEPAARRWLVRYLSEGTPSMRDVAKVTASLAKHGPR
2PV_018807202170459014Switchgrass, Maize And Mischanthus LitterMAEDAARELPKISLEDALQLVHLYADRRSPKYQRAAMRWLERYLTEGEPRLQHFAGVVASLASRDPEADELS
JGI10213J12805_1042274023300000858SoilRELPNLPLGDALQLVHLYAERGSPKYEKAALRWLGRYLTESSPGLIAFAKVTASLAKHMDET*
JGI11615J12901_1027686213300000953SoilRALWLAEDAARELPKLSLQDALQLVHLYAERGSPKYEKAAMRWLERYVAEGSPSLAQYASVVRELAARAE*
JGI10216J12902_10046031023300000956SoilMAEDAARDLPHLTLEDALQLVHLYAERGSPKYEKAALRWLERYLTEDSPRLLHFAEITTNLARREPADR*
JGI10216J12902_10095871313300000956SoilLWLAEDAARELPKLPLEDALQLVHLYAERGSPKYEKAARRWLARYLDEHAPTLHQFASVA
JGI10216J12902_10356572313300000956SoilVTRGRSGRERRALGLAGDAARELPKLLLEEALQLVHLYAERGSPKYEKAALRWPERYLDERDPSLVQFAPLASRL
JGI10216J12902_11273303423300000956SoilMPPRRQEDALQLVHLYAERGSPKYEKAAMRWLERYLTEREPRLQRLAELAADLARREA*
C687J26623_1013350923300002122SoilMPELPLEDALQLVRLYAERGSPKYERAALRWLERYLSEGSPRLQHFAEIARSLAQREEC*
Ga0055438_1018545513300003995Natural And Restored WetlandsRALWAAEDAARELPNLALEDALQLVHLYGERGSPKYEKAALRWLERYLTEGSPRLQHFAEITERLAERAEL*
Ga0055439_1006380223300004019Natural And Restored WetlandsMAEDAARELPNLPLEDALELVHLYAERGSPKYEKAARRWLVRYLTEGTPSLRDVALVTASLAHHDHQV*
Ga0055498_1011422213300004058Natural And Restored WetlandsIERRALWAAEDAAREMPNLPLEDALHLVHLYDERGSPKYEKAAMRWLERYLAEGTPRLQHFAEVAVSLAKRETEAGEPT*
Ga0062589_10125984823300004156SoilMAGRGRSPRASELPLEDLLQLVHLYAERGSPKYERAALRWLERYLIEGSPQLHTAEITASLARREPEDG*
Ga0063356_10192198723300004463Arabidopsis Thaliana RhizosphereMAEDAARELSHLTLEDALQLVHLYAERGSPKYEKAALRWLERYLTEGSPRLLHLAEITTNLARREPMDR*
Ga0062592_10000789753300004480SoilMRRHAVNSQLAEDAARELPNLPLEDLLQLVHLYAERGSPKYERAAMRWLERYITEGSPRLQHFAEITASLAKRDATDS*
Ga0062591_10030712123300004643SoilSLWMAEDAARELPTLPLGDALQLVRLYAERGSPKYEKAALRWLERYLAEGEPSLDRFAEVAAGLSRRLTE*
Ga0066807_101681123300005161SoilMAEDAARELPNLPLENALQLVHLYAERGSPKFEKAAMRWLERYLAEKSPRLEQFAEIAVDFAKREV*
Ga0066814_1006768213300005162SoilMLEDAAREFPNLPLEDALQLVRLYAERGSPKYEKAALRWLDRYLVESSPSLQHFAKVAVSLAKRELETDGRPADRRARA*
Ga0066809_1017854313300005168SoilMAEDAARELPNLSLEDALQLVHLDAERGSPKFERAALRWLERYLMEGSPQLLHFAKIASEFAGREPE*
Ga0066810_1001337313300005169SoilPLEDALQLVHLYAEHGSPKYEKAALRWLERYLAESSPELKHFAEIAHELSSRSPCSNRG*
Ga0065705_1029712623300005294Switchgrass RhizosphereMAEDAAREPPNLPLEDALRLVHLYAERGSPKYEKTAMRWLQRYLTEGSPRLQPFAQVAQDLAKREA*
Ga0070677_1027702523300005333Miscanthus RhizosphereVSALPPLQLVHLYAERGSPKYERAARRWLTRYLTEGTPSVKDIAKVTASLARHEAD*
Ga0070674_10035630323300005356Miscanthus RhizosphereLAEDAARELPNLPLEDALQLVHLYAERGSPKYERAALRWLQRYLTEGSPRLQHVAALTAQLASHQHSSE*
Ga0070698_10206318623300005471Corn, Switchgrass And Miscanthus RhizosphereAREMPQLSLRDALRLVHLYADRGSPKFEAAAQRWLCRYLEEASPRLVDVAKAATSLAKRAEE*
Ga0074051_1171214133300006572SoilMAEDAARELPKLPLENAPQLVHLYAERGSPKYERAAMRWLERYPAEPSPRLEHFANVVASLAKRTMS*
Ga0074055_1060986523300006573SoilLEDALQLVNLYTERGSPKYERAAMRWLEHYLTEGSPKLQHFAKVTASLARARTRGLTG*
Ga0074050_1203638613300006577SoilMAEDAARELPKLPLETPLQLVHLYAERGSPKYERAAMRWLERYPAEPSPRLEHFANVVASLAKRTMS*
Ga0074054_1017042423300006579SoilMAEDAARELPKLPLEDAPQLAHLYAERGSPKYVRAAMRWIERYPAEQSPRLEHFANVVASLATRTMS*
Ga0074049_1278691823300006580SoilELPNLPLEDALQLVHLYAERGSPKYERAQRFVGSSDITESSPTLTHFADITTELAKLDRSEG*
Ga0074048_1006452933300006581SoilMAEDAARELPKLPLEDAPQLVHLYAERGSPKYERAAMRWIERYPAEQSPRLEHFANVVASLAKRTMS*
Ga0075428_10033282613300006844Populus RhizosphereMAEDAARELPNLSLQDALQLVHLYFERDSPKAEPAARRWLVRYLSEGTPSMRDVAKVTASLAKHDPR*
Ga0075428_10050330213300006844Populus RhizosphereLWLAEDAARELPNLSLPDALQLVHLYGERGSPKFEPAARRWLVRYLTEGTPGLRDVARVTASLAECDPQTSRD*
Ga0075434_10098671113300006871Populus RhizosphereASQLPKLPLEDALQLVHLYADRGSPKYKKAAMRWPERYLTEGSPRLRHFSEVAADLAKREA*
Ga0079216_1025926713300006918Agricultural SoilMVEDAARELSNLPLEDALQLVHLYAERGSPKYEKAALRWLERYLAEGSPRLQRFAEVAAELARRSEV*
Ga0075419_1016723433300006969Populus RhizosphereAIERRALWLAEDAARELPNLPLEDALQLVHLYAERGSPKYEKAALRWLERYRTGGSPRLQHFAEITAALAKREPTDR*
Ga0075419_1040216923300006969Populus RhizosphereMAEDAARELPNLPLEDALRLVHLCSERGSPKYEKAALRWLERYLTEASPRLKHFAEPARRAG*
Ga0079218_1188686423300007004Agricultural SoilMAEDAARELPNLPLEDALQLVHLYFERGSPKAEPAARRWLVRYLSEGTPSLRDVAKVTASLATRERG*
Ga0079218_1353134323300007004Agricultural SoilVERRALWLAEDAARELPNLPLEDALQLVHLYFERGSPKAEPAARRWLVRYLSEGTPSLRDVAKVTASLAQASSRRAG*
Ga0105107_1100445513300009087Freshwater SedimentMAEDAARELSNLSFEDALQLVHLYAERGSPKYEKAALRWLERYITESEPRLQHFAEIAVELARRQPES*
Ga0111539_1172340913300009094Populus RhizosphereELQLSLHDALQLVHLYADRGSPKFERAALRWLERYLAEGTPRLQGVAEVTASLARREHEAGEPI*
Ga0075418_1159170523300009100Populus RhizosphereMAEDAARELPNLPLEDALRLVHLCSERGSPKYEKAALRWLERYLTEASPRLKHFTEPARRAG*
Ga0114129_1221720713300009147Populus RhizosphereERRALWLAEDAARELPNLSLEDALQLVHLYAERGSPTFEKAARRWLVRYLTEGKPSLRDVAKLTASLCASSGRAG*
Ga0105243_1023378423300009148Miscanthus RhizosphereMAEDAARELPTLPLGDALQLVRLYAERGSPKYEKAALRWLERYLAEGEPSLERFADVAAGLSRRLTE*
Ga0105092_1045269513300009157Freshwater SedimentPNLPLEDALQLVHLYAERGSPKFEKAALRWLERYLAEGSPRLQHFAEITASLADKERSHATSS*
Ga0105079_102818713300009805Groundwater SandMAEDAARELPSLPLEEALQLVHLYAERGSPKYEKAAMRWLERYLTEGTPRLQHFAEVAADLARREA*
Ga0105084_103725423300009811Groundwater SandPELPLEDALQLVRLYAERGSPKYDRAAMRWLKRYLTEGEPRLQHFAEIAADLARREA*
Ga0105062_108358313300009817Groundwater SandVFAALEDALQLVHLYAERGSPKYEKAAMRWLERYLTEGSPRLQHFAEVTSELAKREFKAGGRN*
Ga0105058_108916923300009837Groundwater SandVRLALWAAEDAARELRNLPLEDALQLVHLYAERGSPKYEKAAMRWLERYLTEGLPRLRHFAELVTDFAKLERRDH*
Ga0126377_1096915023300010362Tropical Forest SoilMAEDAARELPNISLADALQLVHLYAERGSPKFEPAARRWLVRYLSEGTPSVRDIAKVAASLADRAT*
Ga0126377_1108578113300010362Tropical Forest SoilDAARELPKLSLQDALQLVHLYAERGSPKYEKAAMRWLERYIAEASPSLAQYASVVRELAARAD*
Ga0136847_1058733023300010391Freshwater SedimentLPSARRRVCRELPNLPLEDALQLVHLYAERGSPKYEKAAMRWLERYLSEGTPRLQHFAEVAADLAKRDAASHEPS*
Ga0134127_1084403423300010399Terrestrial SoilALWLAEDAARELPNLSLQDALQLVHLYAERGSPKYEKAAMRWLERYVSEGSPTLAQYASVVRELAARAE*
Ga0137424_110565723300011412SoilALWLAEDAARELPNLPLEDALQLVHLYFDRGSPKAEPAARRWLVRYLTEGTPSLRDVARVPASLANPV*
Ga0120192_1001338213300012021TerrestrialMAEDAARELPNLPLEDALQLVRLYAEKDSPKFERAALRWLERYLAEGSPRLQHFAEVTASLAKLDA
Ga0136623_1001642143300012045Polar Desert SandMAEDAARELPKLPLADALQLVHLYAERGSPKHEQAAMRWLERYLSEGSPRLQHFAEIAAGLAKRELEVGPRQ*
Ga0136632_1006631423300012093Polar Desert SandMAEDAARELPKLPLADALQLVHLYAERGSPKHEQAAMRWLEQYLSEGSPRLQHFAEIAAGLAKRELEVGPRQ*
Ga0137364_1066236023300012198Vadose Zone SoilARELPKLPLEDALQLVRLYGERGSPKYERAAMRWLERYLAERSPTLKNFAKVVRSLEHRQLED*
Ga0137374_1044110633300012204Vadose Zone SoilLKPNERRALWLAEDAAREMLELSLEDALQLVHLYAERRSPTYERAAMRWLERCLTAGTPRLQHFAEITASLATVE*
Ga0137435_119182423300012232SoilMAEDTARELPNLPLQDALQLVHLYAERGSPKYEKAALRWLERYLAEGSPRLKHFAEITASLAKLAKD*
Ga0136633_118871723300012527Polar Desert SandAIERRALWMAEDAARELPNLSLEDALQLVHLYAERGSPKYERAAMRWLARYLDESSPRLEQFARITKELDARCEPD*
Ga0136614_1014085233300012684Polar Desert SandMAEDAARELPNLPLEDALQLVHLYAERGSPKFERAALRWLGRYLAEGSPRLEHFADVTASLARHAG*
Ga0157305_1012364113300012891SoilADRELPNLALQDALQLVHLYAERGSPKFEPAASRWLVRYLTEGTPSLKDVAKVTASLAKHRGG*
Ga0157293_1008789213300012898SoilLWLAEDAARELPKLSLQDALQLVHLYAERGSPKYEKAAMRWLERYVAEGSPSLAQYASVVRELAARAE*
Ga0157308_1018790923300012910SoilLPLRDALQLVHLYAERGSPKYERAAMRWLERYLTEGTPRLKHFAEITASLVKRASLDP*
Ga0157301_1046976623300012911SoilLPNLPLEDLLQLVHLYAERGSPKYERAAMRWLERYITEGSPRLQHFAEITASLAKRDATD
Ga0157306_1004979613300012912SoilLPLRDALQLVHLYAERGSPKYERAAMRWLERYLTEGSPRLKHFAAITASLANARR*
Ga0157297_1017769823300012914SoilWLAEDAARELPKLSLQDALQLVHLYAERGSPKYEKAAMRWLERYIAEGSPSLAQYASVVRELAARAE*
Ga0164303_1124254523300012957SoilDDPALQDALQLVHLYAERGSPKYERAALRWLERYLTEGSPRLRHFAEMMAASLAQREPNA
Ga0164302_1135614013300012961SoilMAEDAAREMPELSLEDALQLVHLYAERGSPKFERAAMRWLERYLTAGTPRLRHFAEFTADLAKRDTLVSKR*
Ga0075313_115957213300014267Natural And Restored WetlandsPLEDALELVHLYAERDSPKYERAALRWLERYLAEGSPRLRHFAELTASLARREPAIGE*
Ga0075326_123146523300014271Natural And Restored WetlandsNLPLEDALQLVHLYGERDSPKYERAAMRWLERYVTEGSPTMQHFAEIAGELAKRDV*
Ga0157380_1062041213300014326Switchgrass RhizosphereELPNLPLQDAVQLVHLYAERGSPKFEKAVMRWLERYLSEGTPRLQRFAEITASRAKREPTDG*
Ga0157376_1057845133300014969Miscanthus RhizosphereARELPKLPLEDALQLVHRYAERGSPKYEKAALRWLARYLDEHSPTLQQLASVARDLAARQD*
Ga0157376_1104032713300014969Miscanthus RhizospherePNLPLEDLLQLVHLYAERGSPKYERAALRWLERYLTERSPRLRHFAEITVTLARHEHSVSE*
Ga0173483_1049260223300015077SoilMRRHAVNSQLAEDAARELPNLPLEDLLQLVHLYAERGSPKYERAAMRWLERYITEGSPRLQHFAEITASLAKRDAT
Ga0132258_1000483553300015371Arabidopsis RhizosphereMAEDAARELPNLPLEDALQLVHLYAERGSPKYEPAARRRPVRYLSEGTPSLRDVAKVTASLAKRERGAAR*
Ga0132258_10044928103300015371Arabidopsis RhizosphereMAEDAAREFPNLALEDALQLVHLYAERGSPKYEQAARRWLVRYLNEGTPSLRDVAKVTASLAARRGAT*
Ga0132258_1065812623300015371Arabidopsis RhizosphereMAEDAARELPHLSLEDALALVHLYAERESPKYEKAALRWLERYLAEGSPRLQHFAQVAVNLAGRHADD*
Ga0132256_10220168613300015372Arabidopsis RhizosphereMAEDAARELPHLSLEDALALVHLYAERESPKYEKAALRWLERYLAEGSPRLQQFAQVAVNLAGRHADD*
Ga0132256_10339753823300015372Arabidopsis RhizospherePNLPLEDLLQLVHLYAERGSPKYEKAAMRWLERYLTEGSPRLVNFAQVTSELAGRLE*
Ga0132255_10003273253300015374Arabidopsis RhizosphereMAEDAAREIPNLSLEDALQLVRLYGDQGSPKYERAALRWLERYLAEGAPRLQHFASITRNLAERSTE*
Ga0180121_1012176123300017695Polar Desert SandMAEDAARELPNLPLEDALQLVHLYAERGSPKYEKAAMRWLQRYLAEGSPRLQHFAETVASLATRELEAGGRNY
Ga0184634_1016213713300018031Groundwater SedimentRALWLAEDAARELPHLPLEDLLQLVHLYAERGSPKYEKAAPRWLERYLTEGEPRLQHFAEITASLAEREAGALS
Ga0184634_1025191713300018031Groundwater SedimentMAEDAAREMPELPLEDALQLVHLYAERGSPKFERAAMRWLERYLTESSPGLLNFAEVVTSLAERTSS
Ga0184623_1032841323300018056Groundwater SedimentIERRALWAAEDAARELPNLSLEDALRLVHLYAERGSPKYERAAMRWLERYLTEGSPRLQHFAEITASLAKREL
Ga0187773_1104769913300018064Tropical PeatlandERRALWMAEDAARELPNLPLEDALQLVHLYAERGSPKYEKAALRWLDRYLAEGSPRLQHFAEITTSLAARQEHA
Ga0184624_1013141023300018073Groundwater SedimentMAEDAARELPNLPLEDALQLVHLYAERGSPKFDPAARRWLVRYLTEGTPSMRDVAKVTESLAKRADVS
Ga0184624_1026311923300018073Groundwater SedimentMAEDAARELPNLALEDALQLVHLYFERGSPKAEPAARRWLVRYLTEGTPGVRDIATVTAGLAKLEN
Ga0184624_1034854433300018073Groundwater SedimentMAEDAARELPNLSLEDALQLVHLYFERGSPKAVPAARRWLVRYLTEGSPGLRDIAKVTESLAKLKN
Ga0184640_1026151813300018074Groundwater SedimentLAGSRNAQQLRAGWLAAYAAREMPELSLEDAFQLVRLYAERGSPKYDRAAMRWLKRYLTEGEPRLQHFAEIAADLARREA
Ga0184640_1041178423300018074Groundwater SedimentMAEDAARELPNLPLEDALQLVHLYAERGSPKYERAAMRWLERYLIEGTPRLQHFAEVAASLAKRES
Ga0184612_1025633723300018078Groundwater SedimentMAEDAARELPNLPLEDALQLVHLYAERGSPKYEKAAMWWLERYLTEGTPRLQHFAEITTSLAELEPLDR
Ga0184627_1010179023300018079Groundwater SedimentMAEDAARELPNLSLEDALLLVHLYAERGSPKFERAAIRWLQRYLAEGSPELSDIAKVVTGLVERQDAPYSYE
Ga0190265_1046032323300018422SoilMAEDVARELPNLPPEDALQLVHLYFERGSPKAEPAARRLLARYLTEGSPGLRDVAKVTASLAERHGGMDSHAEPCNDS
Ga0190275_1112281223300018432SoilALWMAEDAARELPNLPLEDALQLVHLYYERGSPKAEPAARRWLVRYLSEGTPSLRDAAKVSASLAKLGG
Ga0190270_1000396993300018469SoilMAGRGAARELPNLPLEDALQLVHLYFEKESPKAAPAARRWLVRYLSEGTPSLHDIAKVTASLAEASSRRAG
Ga0190270_1000492373300018469SoilMAEDAARELPNLTLEDALRLVHLYAERSSPKYEKAALRWLERYLTEGSPRLLHFAEIATNLARRESVDP
Ga0190270_1009324723300018469SoilMAEDAARELPNLPLEDALQLVHLYAERGSPKYEKAALRWLERYLVESSPRLRRFAEVTADLAKLER
Ga0190270_1009517413300018469SoilMAADATRDLPNLPLEDALQLVHLYAERGSAKFERAARRWVVRYLSEGTPRLRDVAKVVAS
Ga0190270_1024253333300018469SoilMAEDAARELPNLPLEDALQLVRLYGERGSPKYEKAALRWLERYLAEGSPRLQHFAEITASLAKRELEAGGSN
Ga0190270_1180074913300018469SoilMAKDAARELPNLPLEDALQLVHLYLERGSPKAEPAARRWLVRYLSEGTPSLRDVAKVTASLARLH
Ga0190270_1254076323300018469SoilMAEDAARELPSLPLEDALQLVHLYFERGSPMAEPAARRWLVRYLSEGMPSLRDVAKVTASLAGASSRRGRLN
Ga0190271_1113595413300018481SoilALWLAEDAARELPNLPLEDALQLVHLYAERGSPKYEKAAMRWLERYLTEGSPRLQHFAEITASLADRMPGDPC
Ga0173481_1007091113300019356SoilEDAARELPNLPLEDALQLVHLYAERGSPKYEKAAMRWLERYLTEGSPRLQHLAEIAASLAKRERE
Ga0173481_1079707713300019356SoilMRRHAVNSQLAEDAARELPNLPLEDLLQLVHLYAERGSPKYERAAMRWLERYITEGSPRLQHFAEITASL
Ga0193741_109087213300019884SoilRELPDLPLEDALQLVHLYAERGSPKYEKAAMRWLERYLAEGDPRLQHFAEITASLAKREP
Ga0193697_101559933300020005SoilMAEDAARELPNLPLEDALQLVRLYGERGSPKYEKAAMRWLERYLAEGTPRLQHFAEITASLANREFEAGGSN
Ga0193696_114609913300020016SoilLSDGLLWLAEDAACELPNLSLEDALQLVHLYAERGSPKYEKAVMRWLERYLMESSPRLEDFAEITASLAQRKAHL
Ga0193738_109569433300020020SoilIWAAEDAARDLPNLPLEDALQLVHLYFERGSPKAEPAARRWLIRYLTEGTPSLRDVATVTASLAQSPDPGLRR
Ga0222622_1003730553300022756Groundwater SedimentMAEDAARELPNLALEDALQLVHLYAERGSPKYEKAAMRWLERYLIEGSPRLRHFAEVAVVLARREV
Ga0222622_1093299613300022756Groundwater SedimentVDAEDAARELPNLPLEDALQLVHLYAERRSPKFERAALRWLERYLAEHSPSLHQFARVTADLQQRSP
Ga0222622_1109887013300022756Groundwater SedimentDLPLEDALQLVHLYADRGSPKYERAAMRWLERYLSEGTPRLQHFAEVAADLARRRSTDAAGLVD
Ga0247745_108736623300022898SoilEDAARELPKLSLQDALQLVHLYAERGSPKYEKAAMRWLERYVAEGSPSLAQYASVVRELAARAE
Ga0247790_1006600813300022915SoilMAEDAARELPTLPLGDALQLVRLYAERGSPKYEKAALRWLERYLAEGEPSLERFADVAAGLSRRLTE
Ga0209521_1028324023300025164SoilEPRALWAAEDAAREMRELSLEDALQLVRLYAERGSPKFERAAMRWLERYLAENSPKLRDFANVVDSLAKREP
Ga0209642_1001481053300025167SoilMRELSLEDALQLVRLYAERGSPKFERAAMRWLERYLAENSPKLRDFANVVDSLAKREP
Ga0209341_1060350223300025325SoilMAEDAAREMPELSLEDALQLVHLYADRGSPKYERAAMRWLERYLAEGTPGLHHFAEVAVSLAKREPDAGGPN
Ga0209751_1030117113300025327SoilDAAREMPELPLEDALQLVHLYAERGSPKYEKAAMRWLVRYLTENTPRLRHFAEITADLAKREA
Ga0210139_100406923300025558Natural And Restored WetlandsMAEDAARELPNLPLEDALELVHLYAERGSPKYEKAARRWLVRYLTEGTPSLRDVALVTASLAHHDHQV
Ga0207687_1084261923300025927Miscanthus RhizosphereRALWLAEDAARELPKLSLQDALQLVHLYAERGSPKYEKAAMRWLERYIAEGSPSLAQYASVVRELAARAD
Ga0256810_100101223300026357SedimentMAEDAARELPSLSLEDALQLVHLYAERGSPKYERAALRWLERYLTEGAPRLQHFAEIAATLAGRQREDA
Ga0207980_100970313300026894SoilMAEDAARELPNLPLENALQLVHLYAERGSPKFEKAAMRWLERYLAEKSPRLEQFAEIAVDFAKREV
Ga0209879_103802913300027056Groundwater SandMAEDAARELPSLPLEEALQLVHLYAERGSPKYEKAAMRWLERYLTEGTPRLQHFAEVAADLARREA
Ga0209879_106488113300027056Groundwater SandAEDAARELPNLPLEDALQLVHLYAERGSPKYEKAALRWLIRYLTEGTPSVRDVAKVTASLAKQADGGW
Ga0208890_101162213300027523SoilPNFPLEDALQLVHLYAEHGSPKYEKAALRWLERYLAESSPELKHFAEIAHELSSRSPCSNQG
(restricted) Ga0233416_1009459213300027799SedimentWMAEDAARELPNLSLEDALQLVHLYAERESPKYERAALRWLERYLAEGSPRLAHFAEVTRNLAERATE
Ga0209382_1122304613300027909Populus RhizosphereKLSLEDLLQLVHLYAERGSPKYEKAALRWLERYLTESSPKLQHFAEVTASLAKREPTDG
Ga0209860_102769523300027949Groundwater SandMAEDAARELSSLPLEDALQLVHLYAERGSPKFERAALRWLERYLAEGEPRLRRFAEVAGDLAKRDAPYSYE
(restricted) Ga0233417_1054154923300028043SedimentMAEDAARELPNLSLEDALQLVHLYAERGSPKYERAALRWLERYLAEGSPRLAHFAEVTRNLAERATE
Ga0247828_1101402823300028587SoilLPLRDALQLVHLYAERGSPKYERAAMRWLERYLTEGSPRLKHFAAITASLANARR
Ga0247818_1108661013300028589SoilMAEDAARELSHLTLEDALQLVHLYAERGSPKYEKAALRWLERYLTEGSPRLLHLAEITTNLARREPMDR
Ga0247822_1081209513300028592SoilIERRALWLAEDAARDLPNLSLPDALQLVHLYGERGSPKFEPAARRWLVRYLTEGTPGLRDVARVTASLAECDPQTSRD
Ga0307316_1031402613300028755SoilVEARELANLPLEDALQLVHLYAERGSPKFERAALRWLERYLTEGSPRLQHFAEIAHELARREPDTDG
Ga0307320_1045994813300028771SoilMAEDAARELPNLPLEDALQLVHLYFERGSPKAEPAARRWLVRYLTEGTPSMREVAKVMSSLARRGEGPTYEKT
Ga0307323_1014906413300028787SoilMAEDAARELPNLALEDALQLVHLYAERGSPKYEKAAMRWLERYLIEGSPRLRHFAEVAVV
Ga0307299_1034581723300028793SoilVRLYAERGSPKYERAAMRWLARYLAESEPGLQHFAEITVRLRGARGRCGSAPFS
Ga0307302_1013818833300028814SoilMAEDAARELPNPPLEDLLQFVHLYAKRGSPKYERAAMRWLERHLTEGTPRLQRFAENTASLADKERT
Ga0307296_1047726413300028819SoilPNLPLEDLLQLVHLYAELGSPKYERAALRWLERYLTEASPRFKHFAEITASLANHEPQDR
Ga0307278_1002329133300028878SoilMAESAARELPNLALEDALQLVHLYEERGSPKYERAAMRWLARYLNEGTPRLQHFAETVRPLAERERPDA
Ga0307300_1014328523300028880SoilMAEDAARELANLPLEDALQLVHLYAERGSPKFDPAARRWLVRYLTEGTPSMRDVAKVTASLAKRADVS
Ga0299907_1022285413300030006SoilMAEDAACELPTLPLEDALQLVHLYAERGSPKYEKAALRWLERFLVEGSPRLQHFAEITASLAKREPLDR
Ga0299907_1036911023300030006SoilMAEDAARELPNLPLEDALKLVYLYAERASPKYEMAAMRWLERYLAEGSPRLKHFADMTARLASHSAD
Ga0268386_1043324613300030619SoilALWAAEDAAREMGTLSLEDALRLVHLYAERRSPKYERAALRWLERYLAEGSPRLPRFAEVAASLARRDPE
Ga0308202_102982513300030902SoilMAEDAARELANLPLEDALQLVHLYAERGSPKFELAARRWLVRYLTEGTPSMRDVAKVTASFAKRERD
Ga0308206_111606513300030903SoilEDAAREMPNLPLKDALQLVHLYAERGSPKFEPGARRWLVRYLSEGSPSLRDVAKVTVILAKLEARR
Ga0307498_1000387233300031170SoilLWLAEDAARELPNLPLEDALMLVHLYAERGSPKSEKAAMRSLARYLDESSPTLAQFSRVTQELAARVDR
Ga0307498_1003245523300031170SoilVWLAEDAARELPNLSLDDALQLVHLYADCESPKYERAALRWLGRYLAEDAPTLQQFAEITATLADYDPTAP
Ga0307497_1069237723300031226SoilERRALWLAEDAARELPKLPLEDALQLVHLYADRGSPKYEKAALRWLARYLDEHSPTLQQFASVARDLAALQD
Ga0318534_1009226023300031544SoilVARGGRRRELGALPLEDALQLVHLYAERGSPKYERAALRWLERYLAEAGPSLEQVARVVASLAERART
Ga0310886_1093889723300031562SoilAEDAARELPNLPLEDALQLVHLYAERGSPKYERAALRWLERYLAEGCPRLAHFAAITAKLACHEHPGSE
Ga0247727_1004991723300031576BiofilmMPDLSLEDALQLVHLYAERGSPKFEKAAMRWLERYLMEGSPRLQHFAEITASLATREPEVGL
Ga0247727_1088496023300031576BiofilmLLNLPLEDALQLVHLYAERGSPKYEKAAMRWLEGYLTEGTPRLRHFAEVAVASRVE
Ga0306917_1133619413300031719SoilVARGGRRRELGALPLEDALQLVHHYAERGSPKYERAALRWLERYLAEAGPSLEQVARVVASLAERART
Ga0310892_1027907123300031858SoilLPLRDALQLVHLYAQRGSPKYERAAMRWLERYPTEGSPRLKHFAAITASLANARR
Ga0310901_1031482613300031940SoilLWLAEDAARELPNLSVPDALQLVRLYGERGSPKFEPAARRWLVRYLTEGTPDLQDVAKVTASLAECDPQTSRG
Ga0310901_1058967423300031940SoilRELQLSLHDALQLVHLYADRGSPKFERAALRWLERYLAEGTPRLQGVAEVTASLARREHEAGEPI
Ga0315278_1017142323300031997SedimentMAEDAARELEDLALEDALQLVHLYAERGSPKYEKAALRWLERYLNEGTPRLQHFAEIAGSLARRENSSA
Ga0318559_1019252413300032039SoilPLEDALQLVHLYAERGSPKYERAALRWLERYLAEAGPSLEQVARVVASLAERART
Ga0310895_1036294223300032122SoilLWLAEDAARELPKLSLQDALQLVHLYAERGSPKYEKAAMRWLERYIAEGSPGLAQYASVVRELAARAE
Ga0307471_10423790223300032180Hardwood Forest SoilIERRALWLAEDAARELPNLALEDALQLVHLYFERGSPKAERAAMRWLQRYLTESEPSLVQFARVAGALAKRAG
Ga0315287_1225071113300032397SedimentMAEDAARELPDMPLEDALQLVHLYAERGSPQYEKAAMRWLERYLTEGSPRLQHFAEITTSLAGH
Ga0315273_1029548133300032516SedimentMAEDAARELEDLALEDALQLVHLYAERGSPKYEKAALRWLERYLNEGTPRLRHFAEIAGSLARRENSSA
Ga0315273_1109061033300032516SedimentNLPLEDALQLVHLYAERGSPKFERAAMRWLERYLTEGTPRLEHFAEIATSLARRESSSA
Ga0315273_1113255023300032516SedimentMAEDAARELEDLPLEDALQLVHLYADRGSPKYEKAAMRWLERYLTESTPSLENFAMVVASLAKRVP
Ga0315273_1180388823300032516SedimentMRQLSLEDALQLVHLYAERRSPKFEKAAMRWLERYLVEGSPRLQHFAEITTSLAKREHEAGA
Ga0247830_1080849013300033551SoilPNLPLEDALELVHLYAERGSPKYEKAALRWLERYLTEGEPRLQHFAEITTRLANLESQDR
Ga0364945_0086743_623_8413300034115SedimentMAEDAARELPNLPLEDALQLVQLYAERGSPKYEKAALRWLERYLTESSPRLEHFAEITVRLAKREPDAGRLP
Ga0364933_192667_131_3493300034150SedimentMAEDAAREHPNLPLEDALQLVHLYFERGSPKAEPAARRWLVRYLSEGTPSLRDVAKVTASLVERELEAGGRN
Ga0364940_0161834_447_6473300034164SedimentMAEDAARELPDLPLEDALQLVHLYAERGSPKYERAALRWLERYLSEGTPRLQRVAEVAADLARRDA
Ga0364932_0198890_42_2423300034177SedimentMAEDAARELPNLPLEDALQLVQLYAERGSPKYERAAMRWLECYLTEGSPRLRHFAEVAGDLARRGA


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.