Metagenome / Metatranscriptome Family F034226

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F034226
Family Type	Metagenome / Metatranscriptome
Number of Sequences	175
Average Sequence Length	62 residues
Representative Sequence	MALPPGFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGD
Number of Associated Samples	106
Number of Associated Scaffolds	175

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	8.57 %
% of genes near scaffold ends (potentially truncated)	46.29 %
% of genes from short scaffolds (< 2000 bps)	83.43 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (59.429 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere (13.143 % of family members)
Environment Ontology (ENVO)	Unclassified (78.286 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (88.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.28% β-sheet: 0.00% Coil/Unstructured: 51.72%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 175 Family Scaffolds
PF03118	RNA_pol_A_CTD	4.00
PF04392	ABC_sub_bind	3.43
PF07589	PEP-CTERM	2.86
PF03401	TctC	2.29
PF13458	Peripla_BP_6	1.71
PF02798	GST_N	1.14
PF08816	Ivy	1.14
PF00211	Guanylate_cyc	1.14
PF00486	Trans_reg_C	1.14
PF13602	ADH_zinc_N_2	1.14
PF03264	Cytochrom_NNT	1.14
PF13801	Metal_resist	1.14
PF00196	GerE	1.14
PF14321	DUF4382	1.14
PF07679	I-set	0.57
PF03466	LysR_substrate	0.57
PF03009	GDPD	0.57
PF01527	HTH_Tnp_1	0.57
PF07399	Na_H_antiport_3	0.57
PF06779	MFS_4	0.57
PF13895	Ig_2	0.57
PF03605	DcuA_DcuB	0.57
PF07813	LTXXQ	0.57
PF08241	Methyltransf_11	0.57
PF02518	HATPase_c	0.57
PF13424	TPR_12	0.57
PF08448	PAS_4	0.57
PF08439	Peptidase_M3_N	0.57
PF06537	DHOR	0.57
PF04187	Cofac_haem_bdg	0.57
PF00665	rve	0.57
PF07364	DUF1485	0.57
PF06742	DUF1214	0.57
PF05598	DUF772	0.57
PF13489	Methyltransf_23	0.57
PF11746	DUF3303	0.57
PF00497	SBP_bac_3	0.57

COG ID	Name	Functional Category	% Frequency in 175 Family Scaffolds
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	4.00
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.43
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	2.29
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.29
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.14
COG3005	Tetraheme cytochrome c subunit NapC of nitrate or TMAO reductase	Energy production and conversion [C]	1.14
COG3016	Putative heme-binding protein PhuW	General function prediction only [R]	0.57
COG5476	Microcystin degradation protein MlrC, contains DUF1485 domain	General function prediction only [R]	0.57
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	0.57
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.57
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.57
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	0.57
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.57
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.57
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.57
COG2704	Anaerobic C4-dicarboxylate transporter	Carbohydrate transport and metabolism [G]	0.57
COG1164	Oligoendopeptidase F	Amino acid transport and metabolism [E]	0.57
COG0584	Glycerophosphoryl diester phosphodiesterase	Lipid transport and metabolism [I]	0.57

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
All Organisms	root	All Organisms	40.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
cellular organisms	root	All Organisms → cellular organisms	40.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	29.14 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	19.43 %
Armatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes	1.14 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	13.71 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1.71 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.14 %
unclassified Armatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes	1.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3.43 %
Sphaerotilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sphaerotilaceae	1.71 %
Gallionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae	1.71 %
Armatimonadetes bacterium RBG_16_67_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium RBG_16_67_12	1.14 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.14 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Candidatus Nitrotoga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga	1.71 %
Sphaerotilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sphaerotilaceae	1.71 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	1.14 %
Polaromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas	1.14 %
Armatimonadetes bacterium RBG_16_67_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium RBG_16_67_12	1.14 %
Schlegelella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella	0.57 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.57 %
Burkholderiales bacterium 8X	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 8X	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Candidatus Nitrotoga arctica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → Candidatus Nitrotoga arctica	1.71 %
Sphaerotilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sphaerotilaceae	1.71 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1.14 %
unclassified Polaromonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas	1.14 %
Armatimonadetes bacterium RBG_16_67_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium RBG_16_67_12	1.14 %
Schlegelella koreensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella → Schlegelella koreensis	0.57 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.57 %
Burkholderiales bacterium 8X	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 8X	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Candidatus Nitrotoga arctica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → Candidatus Nitrotoga arctica	1.71 %
Sphaerotilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sphaerotilaceae	1.71 %
Polaromonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas → Polaromonas sp.	1.14 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1.14 %
Armatimonadetes bacterium RBG_16_67_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium RBG_16_67_12	1.14 %
Schlegelella koreensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella → Schlegelella koreensis	0.57 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.57 %
Burkholderiales bacterium 8X	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 8X	0.57 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886012\|MBSR1b_contig_6223281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	878	Open in IMG/M
3300004081\|Ga0063454_101928661	Not Available	520	Open in IMG/M
3300004114\|Ga0062593_101285928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	774	Open in IMG/M
3300004479\|Ga0062595_101302208	Not Available	654	Open in IMG/M
3300004643\|Ga0062591_100686351	Not Available	923	Open in IMG/M
3300005093\|Ga0062594_100148455	Not Available	1530	Open in IMG/M
3300005093\|Ga0062594_101664203	Not Available	665	Open in IMG/M
3300005166\|Ga0066674_10297466	Not Available	759	Open in IMG/M
3300005293\|Ga0065715_10193945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1399	Open in IMG/M
3300005293\|Ga0065715_10775103	Not Available	620	Open in IMG/M
3300005295\|Ga0065707_10873920	Not Available	575	Open in IMG/M
3300005327\|Ga0070658_10925798	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300005328\|Ga0070676_10366891	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300005330\|Ga0070690_100818173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 8X	723	Open in IMG/M
3300005331\|Ga0070670_100001935	All Organisms → cellular organisms → Bacteria	16952	Open in IMG/M
3300005331\|Ga0070670_100029983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4684	Open in IMG/M
3300005331\|Ga0070670_100081366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2783	Open in IMG/M
3300005331\|Ga0070670_100905015	Not Available	800	Open in IMG/M
3300005333\|Ga0070677_10010400	Not Available	3182	Open in IMG/M
3300005333\|Ga0070677_10056279	All Organisms → cellular organisms → Bacteria → Proteobacteria	1608	Open in IMG/M
3300005333\|Ga0070677_10421230	All Organisms → cellular organisms → Bacteria → Proteobacteria	708	Open in IMG/M
3300005333\|Ga0070677_10756391	Not Available	551	Open in IMG/M
3300005334\|Ga0068869_101067848	Not Available	705	Open in IMG/M
3300005338\|Ga0068868_101152606	Not Available	715	Open in IMG/M
3300005343\|Ga0070687_100035900	All Organisms → cellular organisms → Bacteria	2466	Open in IMG/M
3300005344\|Ga0070661_100084391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2347	Open in IMG/M
3300005353\|Ga0070669_100713539	Not Available	847	Open in IMG/M
3300005354\|Ga0070675_100054325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3295	Open in IMG/M
3300005354\|Ga0070675_100137557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2085	Open in IMG/M
3300005354\|Ga0070675_100556633	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300005355\|Ga0070671_100018093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5720	Open in IMG/M
3300005355\|Ga0070671_100178304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1798	Open in IMG/M
3300005355\|Ga0070671_100188528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	1748	Open in IMG/M
3300005355\|Ga0070671_100379148	Not Available	1208	Open in IMG/M
3300005355\|Ga0070671_100428499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1133	Open in IMG/M
3300005356\|Ga0070674_100431644	Not Available	1083	Open in IMG/M
3300005366\|Ga0070659_100820418	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300005367\|Ga0070667_101530231	Not Available	627	Open in IMG/M
3300005456\|Ga0070678_100026137	All Organisms → cellular organisms → Bacteria → Proteobacteria	3941	Open in IMG/M
3300005456\|Ga0070678_100043185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas → Polaromonas sp.	3209	Open in IMG/M
3300005456\|Ga0070678_100050149	All Organisms → cellular organisms → Bacteria → Proteobacteria	3017	Open in IMG/M
3300005456\|Ga0070678_100237055	Not Available	1523	Open in IMG/M
3300005456\|Ga0070678_100938776	Not Available	793	Open in IMG/M
3300005456\|Ga0070678_101055797	Not Available	749	Open in IMG/M
3300005456\|Ga0070678_101303739	All Organisms → cellular organisms → Bacteria → Proteobacteria	676	Open in IMG/M
3300005457\|Ga0070662_100200274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1584	Open in IMG/M
3300005457\|Ga0070662_101446195	Not Available	592	Open in IMG/M
3300005459\|Ga0068867_100143508	Not Available	1868	Open in IMG/M
3300005459\|Ga0068867_100159732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1777	Open in IMG/M
3300005459\|Ga0068867_100195779	Not Available	1615	Open in IMG/M
3300005539\|Ga0068853_100111282	All Organisms → cellular organisms → Bacteria → Proteobacteria	2433	Open in IMG/M
3300005543\|Ga0070672_100078695	All Organisms → cellular organisms → Bacteria	2638	Open in IMG/M
3300005543\|Ga0070672_100421500	Not Available	1146	Open in IMG/M
3300005543\|Ga0070672_100430308	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
3300005543\|Ga0070672_100742616	Not Available	861	Open in IMG/M
3300005543\|Ga0070672_101169123	Not Available	685	Open in IMG/M
3300005547\|Ga0070693_100176922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1371	Open in IMG/M
3300005548\|Ga0070665_101180732	Not Available	776	Open in IMG/M
3300005577\|Ga0068857_100931304	Not Available	834	Open in IMG/M
3300005577\|Ga0068857_102276178	Not Available	532	Open in IMG/M
3300005616\|Ga0068852_100278788	All Organisms → cellular organisms → Bacteria	1611	Open in IMG/M
3300005616\|Ga0068852_100428627	All Organisms → cellular organisms → Bacteria	1306	Open in IMG/M
3300005616\|Ga0068852_101027544	Not Available	843	Open in IMG/M
3300005616\|Ga0068852_101398682	Not Available	722	Open in IMG/M
3300005616\|Ga0068852_102701331	Not Available	516	Open in IMG/M
3300005618\|Ga0068864_101397628	Not Available	702	Open in IMG/M
3300005618\|Ga0068864_101471961	Not Available	684	Open in IMG/M
3300005618\|Ga0068864_102381347	Not Available	536	Open in IMG/M
3300005718\|Ga0068866_11067903	Not Available	577	Open in IMG/M
3300005719\|Ga0068861_102311616	Not Available	540	Open in IMG/M
3300005834\|Ga0068851_10238710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1027	Open in IMG/M
3300005841\|Ga0068863_100108071	All Organisms → cellular organisms → Bacteria → Proteobacteria	2647	Open in IMG/M
3300005841\|Ga0068863_101679220	Not Available	645	Open in IMG/M
3300005842\|Ga0068858_100555487	Not Available	1112	Open in IMG/M
3300005842\|Ga0068858_100901051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	865	Open in IMG/M
3300005844\|Ga0068862_101765813	Not Available	627	Open in IMG/M
3300006046\|Ga0066652_100995125	Not Available	796	Open in IMG/M
3300006237\|Ga0097621_100135282	Not Available	2101	Open in IMG/M
3300006237\|Ga0097621_100222585	All Organisms → cellular organisms → Bacteria → Proteobacteria	1645	Open in IMG/M
3300006237\|Ga0097621_100431296	Not Available	1185	Open in IMG/M
3300006358\|Ga0068871_101312176	Not Available	681	Open in IMG/M
3300006581\|Ga0074048_13002538	Not Available	666	Open in IMG/M
3300006881\|Ga0068865_100360295	All Organisms → cellular organisms → Bacteria → Proteobacteria	1181	Open in IMG/M
3300009094\|Ga0111539_10249981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium RBG_16_67_12	2065	Open in IMG/M
3300009098\|Ga0105245_12352826	Not Available	586	Open in IMG/M
3300009148\|Ga0105243_10677585	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300009176\|Ga0105242_10247432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sphaerotilaceae	1605	Open in IMG/M
3300009177\|Ga0105248_10036372	All Organisms → cellular organisms → Bacteria → Proteobacteria	5506	Open in IMG/M
3300009177\|Ga0105248_10295747	All Organisms → cellular organisms → Bacteria	1823	Open in IMG/M
3300009177\|Ga0105248_11312905	Not Available	818	Open in IMG/M
3300009177\|Ga0105248_11429085	Not Available	783	Open in IMG/M
3300009553\|Ga0105249_12581275	Not Available	580	Open in IMG/M
3300010364\|Ga0134066_10450506	Not Available	503	Open in IMG/M
3300012212\|Ga0150985_113616850	Not Available	1054	Open in IMG/M
3300012508\|Ga0157315_1072963	Not Available	508	Open in IMG/M
3300012891\|Ga0157305_10077570	Not Available	775	Open in IMG/M
3300012893\|Ga0157284_10102543	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300012915\|Ga0157302_10556564	Not Available	506	Open in IMG/M
3300012961\|Ga0164302_10832274	Not Available	700	Open in IMG/M
3300012988\|Ga0164306_10798589	Not Available	760	Open in IMG/M
3300013297\|Ga0157378_10391251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1367	Open in IMG/M
3300013297\|Ga0157378_12504708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → Candidatus Nitrotoga arctica	568	Open in IMG/M
3300013306\|Ga0163162_10324145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium RBG_16_67_12	1673	Open in IMG/M
3300013308\|Ga0157375_10460073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas → Polaromonas sp.	1438	Open in IMG/M
3300013308\|Ga0157375_10509682	Not Available	1367	Open in IMG/M
3300013308\|Ga0157375_10531339	All Organisms → cellular organisms → Bacteria	1339	Open in IMG/M
3300013308\|Ga0157375_10722630	Not Available	1149	Open in IMG/M
3300014745\|Ga0157377_10613014	Not Available	778	Open in IMG/M
3300014969\|Ga0157376_10568783	All Organisms → cellular organisms → Bacteria → Proteobacteria	1124	Open in IMG/M
3300015371\|Ga0132258_13609809	Not Available	1058	Open in IMG/M
3300015374\|Ga0132255_102725285	Not Available	756	Open in IMG/M
3300015374\|Ga0132255_105765233	Not Available	524	Open in IMG/M
3300017792\|Ga0163161_10050346	All Organisms → cellular organisms → Bacteria → Proteobacteria	3014	Open in IMG/M
3300017792\|Ga0163161_10228532	All Organisms → cellular organisms → Bacteria	1443	Open in IMG/M
3300018476\|Ga0190274_10002703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	10475	Open in IMG/M
3300019356\|Ga0173481_10396818	Not Available	673	Open in IMG/M
3300024055\|Ga0247794_10042824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1217	Open in IMG/M
3300025315\|Ga0207697_10098085	Not Available	1247	Open in IMG/M
3300025321\|Ga0207656_10275028	Not Available	829	Open in IMG/M
3300025899\|Ga0207642_11128508	Not Available	507	Open in IMG/M
3300025907\|Ga0207645_10885508	Not Available	606	Open in IMG/M
3300025909\|Ga0207705_11047647	Not Available	629	Open in IMG/M
3300025919\|Ga0207657_10961937	Not Available	656	Open in IMG/M
3300025919\|Ga0207657_11139171	Not Available	595	Open in IMG/M
3300025920\|Ga0207649_10052755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	2524	Open in IMG/M
3300025920\|Ga0207649_10356831	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300025920\|Ga0207649_11134082	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300025923\|Ga0207681_10539571	Not Available	959	Open in IMG/M
3300025923\|Ga0207681_11773567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sphaerotilaceae	515	Open in IMG/M
3300025925\|Ga0207650_11774243	Not Available	522	Open in IMG/M
3300025926\|Ga0207659_10039402	All Organisms → cellular organisms → Bacteria → Proteobacteria	3295	Open in IMG/M
3300025926\|Ga0207659_11323475	Not Available	618	Open in IMG/M
3300025930\|Ga0207701_10173418	All Organisms → cellular organisms → Bacteria → Proteobacteria	1905	Open in IMG/M
3300025930\|Ga0207701_10419355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1151	Open in IMG/M
3300025930\|Ga0207701_11446093	Not Available	559	Open in IMG/M
3300025931\|Ga0207644_11377484	Not Available	592	Open in IMG/M
3300025934\|Ga0207686_10638269	Not Available	841	Open in IMG/M
3300025935\|Ga0207709_10028953	All Organisms → cellular organisms → Bacteria	3207	Open in IMG/M
3300025937\|Ga0207669_10375583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella → Schlegelella koreensis	1106	Open in IMG/M
3300025937\|Ga0207669_11072951	Not Available	679	Open in IMG/M
3300025937\|Ga0207669_11540601	Not Available	567	Open in IMG/M
3300025937\|Ga0207669_11815863	Not Available	521	Open in IMG/M
3300025939\|Ga0207665_11090523	Not Available	636	Open in IMG/M
3300025940\|Ga0207691_10053199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3697	Open in IMG/M
3300025940\|Ga0207691_10088623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sphaerotilaceae	2775	Open in IMG/M
3300025941\|Ga0207711_10987548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	781	Open in IMG/M
3300025941\|Ga0207711_11579765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → Candidatus Nitrotoga arctica	599	Open in IMG/M
3300025942\|Ga0207689_10214938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1589	Open in IMG/M
3300025945\|Ga0207679_10195278	Not Available	1686	Open in IMG/M
3300025960\|Ga0207651_10098169	Not Available	2165	Open in IMG/M
3300025960\|Ga0207651_10815852	Not Available	828	Open in IMG/M
3300025960\|Ga0207651_11182328	Not Available	686	Open in IMG/M
3300025972\|Ga0207668_11376935	Not Available	636	Open in IMG/M
3300025981\|Ga0207640_11439062	Not Available	618	Open in IMG/M
3300025986\|Ga0207658_11833330	Not Available	553	Open in IMG/M
3300026067\|Ga0207678_10878217	Not Available	793	Open in IMG/M
3300026067\|Ga0207678_11226406	Not Available	664	Open in IMG/M
3300026088\|Ga0207641_10695307	Not Available	1001	Open in IMG/M
3300026088\|Ga0207641_11642530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → Candidatus Nitrotoga arctica	645	Open in IMG/M
3300026089\|Ga0207648_10029298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4882	Open in IMG/M
3300026089\|Ga0207648_11126446	Not Available	736	Open in IMG/M
3300026089\|Ga0207648_12187870	Not Available	514	Open in IMG/M
3300026095\|Ga0207676_10244451	Not Available	1612	Open in IMG/M
3300026095\|Ga0207676_11731486	Not Available	623	Open in IMG/M
3300026121\|Ga0207683_10015945	Not Available	6396	Open in IMG/M
3300026121\|Ga0207683_11321765	All Organisms → cellular organisms → Bacteria → Proteobacteria	667	Open in IMG/M
3300026142\|Ga0207698_10838422	Not Available	924	Open in IMG/M
3300026142\|Ga0207698_12535211	Not Available	523	Open in IMG/M
3300027907\|Ga0207428_11160248	Not Available	538	Open in IMG/M
3300028381\|Ga0268264_11327140	Not Available	730	Open in IMG/M
3300028381\|Ga0268264_12431707	Not Available	530	Open in IMG/M
3300028592\|Ga0247822_10827036	Not Available	756	Open in IMG/M
3300031366\|Ga0307506_10422260	Not Available	550	Open in IMG/M
3300031939\|Ga0308174_11479015	Not Available	582	Open in IMG/M
3300032074\|Ga0308173_10050124	Not Available	3036	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	82.86%
Environmental	Environmental	17.14%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	82.86%
Terrestrial	Environmental → Terrestrial	17.14%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	45.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	34.86%
Soil	Environmental → Terrestrial → Soil	17.14%
Roots	Host-Associated → Plants → Roots	2.29%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	33.14%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	25.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	14.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.57%
Soil	Host-Associated → Plants → Rhizoplane → Soil	5.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.00%
Loam	Environmental → Terrestrial → Soil → Loam	2.86%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.29%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	33.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	25.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.29%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	5.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.43%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.29%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.29%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.71%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.57%

Habitat	Taxonomy	Distribution
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	13.14%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	12.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	8.57%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	8.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	7.43%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	5.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.29%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.14%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.14%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.14%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.57%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.57%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.57%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.57%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.57%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.57%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MBSR1b_0186.00001500	2162886012	Miscanthus Rhizosphere	MIPPPDSDPTAHRVHERALRPPEPSNWRRHGPYLRALAVAMVLTVAAASAGMLMA
Ga0063454_1019286612	3300004081	Soil	LKVQFMAPPPGSDSTARRVHDRVSSAPEPSNWRRHGPYLRTLAVAIVLTVAAASAGMLMALMGD*
Ga0062593_1012859281	3300004114	Soil	MALPPGFDPTAHRVHDRVSPPPERSNWRRHGPYLRTLAVAIVLTTAAASAGMLMALMGD*
Ga0062595_1013022082	3300004479	Soil	MALPPDFDPTAHRVHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0062591_1006863513	3300004643	Soil	VVHDIPARMVGGRATTDVQPMALPPGFDPNAQHRVHDRVPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD*
Ga0062594_1001484552	3300005093	Soil	MAPPPGFDPTAHRAHGRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0062594_1016642032	3300005093	Soil	MALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGLLMALMGD*
Ga0066674_102974661	3300005166	Soil	MVGSRATTEVQSMALPPGSDPTGAHRVHHRVSPSPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMPD*
Ga0065715_101939452	3300005293	Miscanthus Rhizosphere	MIPPPDSDPTAHRVHERALRPPEPSNWRRHGPYLRALAVAMVLTVAAASAGMLMALLGD*
Ga0065715_107751032	3300005293	Miscanthus Rhizosphere	MALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALM
Ga0065707_108739202	3300005295	Switchgrass Rhizosphere	MALPPGFDPTSHRVHDRASRPPEPSDWRRHGPHLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0070658_109257981	3300005327	Corn Rhizosphere	MALPPDSNSTAHRAHGRVSPPPAPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070676_103668911	3300005328	Miscanthus Rhizosphere	MALPPDSNSTAHRAHGRVSPPPAPSNWRWHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070690_1008181732	3300005330	Switchgrass Rhizosphere	MHVPAHMVDRRPTTEVHLMALPPGFDRTGHPVHDRVSRPLERSNWRRHGPYLRTLAVALVLTAAAASAGMLMSLMGD*
Ga0070670_1000019355	3300005331	Switchgrass Rhizosphere	MALPPGFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGLLMALMGD*
Ga0070670_1000299833	3300005331	Switchgrass Rhizosphere	MVVGRATTQVLPVSPPPRFDPAEHRVHDRVSRPPKPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070670_1000813662	3300005331	Switchgrass Rhizosphere	VALPPGSNPSKHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070670_1009050151	3300005331	Switchgrass Rhizosphere	MAPPPGFDPNAHRVHDRVSRSPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALLGD*
Ga0070677_100104005	3300005333	Miscanthus Rhizosphere	MAPPPGFDPTTHRVHGRASRPPEPSNWRRHWPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070677_100562793	3300005333	Miscanthus Rhizosphere	HRVHDRASRPPEPSDWRRHGPHLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0070677_104212301	3300005333	Miscanthus Rhizosphere	MALPPGFDPTAHRVHGRVSRPPERSNWRRHGPHLRTLAAAVVLTAAAASAG
Ga0070677_107563911	3300005333	Miscanthus Rhizosphere	NSTAHRAHGRVSPPPAPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068869_1010678482	3300005334	Miscanthus Rhizosphere	MASPPDFDPTRHRVHEHAVRPLERSQWRRHGPYLRTLAVAMVLTVAAASAGMLMALMGD*
Ga0068868_1011526062	3300005338	Miscanthus Rhizosphere	MVGGRATTEVQPMALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD*
Ga0070687_1000359004	3300005343	Switchgrass Rhizosphere	FDPTSHRVHDRASRPPEPSDWRRHGPHLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0070661_1000843915	3300005344	Corn Rhizosphere	MALPPRLDPTAHRVPDRVSRPPRASPWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070669_1007135392	3300005353	Switchgrass Rhizosphere	PMALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD*
Ga0070675_1000543251	3300005354	Miscanthus Rhizosphere	VTLPPRFDPTAHRVHDRVSRPPEHSNWGRHGPYMRTLAVALVLTAAAASAGMLMALMGD*
Ga0070675_1001375574	3300005354	Miscanthus Rhizosphere	MVAGRATTQVLPVSPPPRFDPAEHRVHDRVSRPSEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070675_1005566333	3300005354	Miscanthus Rhizosphere	MAPPPVFDPSAHRARHRAAQPPETANRRRHGPYLRTLAVAVVLTAAAASAGLLMALIGD*
Ga0070671_1000180936	3300005355	Switchgrass Rhizosphere	MALPPGSDPTAAHRVHDRVSPPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0070671_1001783042	3300005355	Switchgrass Rhizosphere	MAPPPVFDPSAHRARHRAAQPPETANRRRHGPYLRTLAVAVVLTAAAASAGLLMALMGD*
Ga0070671_1001885283	3300005355	Switchgrass Rhizosphere	MALPPDFHPTAHRVHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLM
Ga0070671_1003791482	3300005355	Switchgrass Rhizosphere	MALPPGFDPTAHRVHGRVSRPPERSNWRRHGPHLRTLAAAVVLTAAAASAGILMALMGD*
Ga0070671_1004284994	3300005355	Switchgrass Rhizosphere	MALPPGFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0070674_1004316442	3300005356	Miscanthus Rhizosphere	MVGSRATTEVHPMALPPGFDPTAHRVHDRVSRPPEPSSWRRHGPYLRTLAVAIVLTAAAASAGMLMTLM
Ga0070659_1008204183	3300005366	Corn Rhizosphere	MALPPGFDPNAHRAHDRASRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070667_1015302311	3300005367	Switchgrass Rhizosphere	MVGSRTTTEVQSMALPPGFDPTAHRVHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALLGD*
Ga0070678_1000261376	3300005456	Miscanthus Rhizosphere	ATTEVQSMALPPGFDPTAHRVHDRVSPPPERSNWRRHGPYLRTLAVAIVLTTAAASAGMLMALMGD*
Ga0070678_1000431852	3300005456	Miscanthus Rhizosphere	MAPPPGFDPTTHRVHGRASRPPEPSNWRRHWPYLRTLAVALVLTAAAASAGMLMALMGA*
Ga0070678_1000501493	3300005456	Miscanthus Rhizosphere	MALPPGFDPTAHRVHDRVSRPPEPSSWRRHGPYLRTLAVAIVLTAAAASAGMLMTLMGD*
Ga0070678_1002370552	3300005456	Miscanthus Rhizosphere	VTLPPRFDPTAHRVHDRVSRPPEHSNWGRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070678_1009387762	3300005456	Miscanthus Rhizosphere	PPDFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGLLMALMGD*
Ga0070678_1010557972	3300005456	Miscanthus Rhizosphere	MVDRRPTTEVHLMALPPGFDRTRHPVHDRVSRPLERSNWRRHGPYLRTLAVALVLTAAAASAGMLMSLMGD*
Ga0070678_1013037392	3300005456	Miscanthus Rhizosphere	AHRVHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALLGD*
Ga0070662_1002002742	3300005457	Corn Rhizosphere	VLPVSPPPRFDPAEHRVHDRVSRPSEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070662_1014461951	3300005457	Corn Rhizosphere	MALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTTAAASAWMLMALMGD*
Ga0068867_1001435084	3300005459	Miscanthus Rhizosphere	MALPPGFDPTAHRVHDRVSRPPERSSWRRHGPYLRTLAVAIVLTAAAASAGMLMTLMGD*
Ga0068867_1001597322	3300005459	Miscanthus Rhizosphere	MAPPPGFDPTAHRVLDRASRAPRPSNWRRHGPYFRTLAVAIVLTAAAASTGMLMALGD*
Ga0068867_1001957791	3300005459	Miscanthus Rhizosphere	MVGGRATTEVHSMALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAA
Ga0068853_1001112821	3300005539	Corn Rhizosphere	MIPPPDSDPTAHRVHERALRPPEPSNWRRHGPYLRALAVAMVLTVAAA
Ga0070672_1000786954	3300005543	Miscanthus Rhizosphere	PPGFDPTSHRVHDRASRPPEPSDWRRHGPHLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0070672_1004215002	3300005543	Miscanthus Rhizosphere	VTLPPRFDPIAHRVHDRVSRPPEHSNWGRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070672_1004303081	3300005543	Miscanthus Rhizosphere	RMVVGRATTQVLPVSPPPRFDPAEHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070672_1007426161	3300005543	Miscanthus Rhizosphere	MALPPDFDRTAHRVHDRVSRQPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070672_1011691231	3300005543	Miscanthus Rhizosphere	MALPPGFDPNAQHRVHDRVPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD
Ga0070693_1001769222	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MALPPGFDPNAHRAHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070665_1011807321	3300005548	Switchgrass Rhizosphere	MIPPPDSDPTAHRVHERALRPPEPSNWRRHGPYLRALAVAMVLTVAAASAGMLM
Ga0068857_1009313041	3300005577	Corn Rhizosphere	AHRVHERALRPPEPSNWRRHGPYLRALAVAMVLTVAAASAGMLMALLGD*
Ga0068857_1022761782	3300005577	Corn Rhizosphere	DPTAHRVHDRASPPPEPSNWRRHGPHLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0068852_1002787883	3300005616	Corn Rhizosphere	SRATTEVQSMALPPDSNSTAHRAHGRVSPPPAPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068852_1004286271	3300005616	Corn Rhizosphere	GTIAAAPALMAPPPGFDPTAHRVRDRALRPPEPSKWRRHGPHLRTLAVAIVLTAAAASAGMLIALMGA*
Ga0068852_1010275441	3300005616	Corn Rhizosphere	MPRVWSAVEKTTEVHPMALPPRLDPTAHRVPDRVSRPPRASPWRRHGPYLRTLAVALVLTAAAASAGML
Ga0068852_1013986821	3300005616	Corn Rhizosphere	AYGRSRATTKGHPVTLPPRFDPTAHRVHDRVSRPPEHSNWGRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068852_1027013312	3300005616	Corn Rhizosphere	VLPVSPPPRFDPAEHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068864_1013976282	3300005618	Switchgrass Rhizosphere	MALPPGFDPTAHRAHDRVSRPPEPSSWRRHGPYLRTLAVAIVLTAAAASAGMLMTLMGD*
Ga0068864_1014719611	3300005618	Switchgrass Rhizosphere	MVGSHARTEVHPMALPPDFDPTMHRVRDRMSRPPEPSHWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068864_1023813471	3300005618	Switchgrass Rhizosphere	PARMVGSRATTEVQSMALPPGFDPNAHRVHDRVSRPPEHSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068866_110679032	3300005718	Miscanthus Rhizosphere	MALPPGFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGVLMALMED*
Ga0068861_1023116161	3300005719	Switchgrass Rhizosphere	ALPPGFDPNAQHRVHGRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD*
Ga0068851_102387101	3300005834	Corn Rhizosphere	MIPPPDSDPTAHRVHERALRPPEPSNWRRHGPYLRALAVAMVLTVAAASAG
Ga0068863_1001080712	3300005841	Switchgrass Rhizosphere	MALPPGFDPNAHRVHDRVSRPPEHSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068863_1016792202	3300005841	Switchgrass Rhizosphere	MPSRMVGKSPNEVISVALPPGSNPSKHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068858_1005554871	3300005842	Switchgrass Rhizosphere	MALPPGFDPTANREHDRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0068858_1009010512	3300005842	Switchgrass Rhizosphere	MALPPGFDPNAHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068862_1017658132	3300005844	Switchgrass Rhizosphere	MALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0066652_1009951251	3300006046	Soil	MALPPGFDPTAHRVHGRVSPPPEPSNWRRHGPYLRTLAVALVLTVAAASAGMLMALMGD*
Ga0097621_1001352822	3300006237	Miscanthus Rhizosphere	MALPPGFDPTAHRVHDRVSRPPERSNWRRHGPHLRTLAAALVLTAAAASAGILMALMGD*
Ga0097621_1002225852	3300006237	Miscanthus Rhizosphere	MVGSRATTEVHPMALPPGFDPTPQGVHDRVSHPPEPSNWRRHGPYLRTLAVALVLTAAAASAGILLALMGD*
Ga0097621_1004312961	3300006237	Miscanthus Rhizosphere	RATTEVQSMALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD*
Ga0068871_1013121762	3300006358	Miscanthus Rhizosphere	MALPPDFDPTAHRVHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALLGD*
Ga0074048_130025382	3300006581	Soil	MALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068865_1003602952	3300006881	Miscanthus Rhizosphere	VVHDIPARMVGGRATTEVQPMALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD*
Ga0111539_102499811	3300009094	Populus Rhizosphere	PMALPPGFDPKHDRASRPPEPSNWRRHGPYLRTLAVAVVLTAAAASAWMLMALMGD*
Ga0105245_123528262	3300009098	Miscanthus Rhizosphere	EVHPMALPPGFDPTAHRVHDRVSRPPEPSSWRRHGPYLRTLAVAIVLTAAAASAGMLMTLMGD*
Ga0105243_106775851	3300009148	Miscanthus Rhizosphere	PGFDPTAHPVHDRASRSPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0105242_102474323	3300009176	Miscanthus Rhizosphere	MAPPPGFDPTAHRVLDRASRAPGPSNWRRHGPYLRTLAVAIVLTAAAASTGMLMALGD*
Ga0105248_100363723	3300009177	Switchgrass Rhizosphere	MVGSFATTEVQSMALPPGSDPTAAHRVHDRVSPPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0105248_102957472	3300009177	Switchgrass Rhizosphere	MAPPPGFDPDAQRAHEGKLRPPVPSTWRRHAPYLRTLAVVMVLTVAAASAGMLMALMGD*
Ga0105248_113129051	3300009177	Switchgrass Rhizosphere	MGPPPGFDPTAHPVHDRASRSPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGTERSGS
Ga0105248_114290852	3300009177	Switchgrass Rhizosphere	GLAPQFKMGRPAAYGGRATTEVHSMALPPGFDPNAHRVHDRVSRPPEHSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0105249_125812753	3300009553	Switchgrass Rhizosphere	RAMVRSRATTEVHPMALPPDFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGVLMALMED*
Ga0134066_104505061	3300010364	Grasslands Soil	SMALRPGFDPTEHRAHDRTSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAARLTALMGD
Ga0150985_1136168501	3300012212	Avena Fatua Rhizosphere	MALPPRLDPTSHRVPDRVSGPPRASPWRRHGPYLRTLAVALVLTAAAASAGMLMALMGS
Ga0157315_10729631	3300012508	Arabidopsis Rhizosphere	VALPPGFDPTAHRVRDRAARPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0157305_100775701	3300012891	Soil	MVGGRATTEVHPMALPPGFDPNAHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0157284_101025431	3300012893	Soil	ARMVGGRATTEVHPMALPPGFDPNAHRVHERASRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0157302_105565642	3300012915	Soil	VHPMALPPGFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGLLMALMGD*
Ga0164302_108322741	3300012961	Soil	MALPPGFDPTPQGVHDRVSHPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0164306_107985892	3300012988	Soil	MAMPPGFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVAVVLTAAAASAGMLMALMGD*
Ga0157378_103912511	3300013297	Miscanthus Rhizosphere	MALPPDFDPTAHRVHDRVSRPPERSNWRGHGPYLRTLAVALVLSAAAASAGMLMALLGD*
Ga0157378_125047081	3300013297	Miscanthus Rhizosphere	LPPGFDPTAHRVHGRVSRPPARSNWRRHGPHLRTLAAAVVLTAAAASAGMLMALLGD*
Ga0163162_103241453	3300013306	Switchgrass Rhizosphere	MVGGRATTEVHPMALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTTAAASAWMLMALMGD*
Ga0157375_104600733	3300013308	Miscanthus Rhizosphere	MAPPPGFDPTAHRAHGRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLIALM
Ga0157375_105096821	3300013308	Miscanthus Rhizosphere	PMALPPGFDPNAHRVHDRVSRPPEHSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0157375_105313391	3300013308	Miscanthus Rhizosphere	MGPPPGFDPTAHPVHDRASRSPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGTERSGSVT
Ga0157375_107226301	3300013308	Miscanthus Rhizosphere	VVHDIPARMVGGRATTDVQPMALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMAL
Ga0157377_106130142	3300014745	Miscanthus Rhizosphere	MVGSFATTEVQSMALPPGSVPTAAHRVHDRVSPPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0157376_105687832	3300014969	Miscanthus Rhizosphere	MVGGRTTTEVQSMALPPGFDPTAHRVHDRVSRPPERSNWRRHGPHLRTLAAALVLTAAAASAGMLMALLGD*
Ga0132258_136098092	3300015371	Arabidopsis Rhizosphere	MALPPGFDPTAHRVHDRAAHPPELSKWRRHGPYLRTLAVAIVLRRGRLCGMLMALTGD*
Ga0132255_1027252853	3300015374	Arabidopsis Rhizosphere	MVGGRATTDVQPMALPPGFDPNAQHRVHDRVPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD
Ga0132255_1057652331	3300015374	Arabidopsis Rhizosphere	MALPPGFAPNAHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0163161_100503463	3300017792	Switchgrass Rhizosphere	MALPPGFDPTAHRVHDRVSRPPERSNWRRHGPHLRTLAAAVVLTAAAASAGILMALMGD
Ga0163161_102285324	3300017792	Switchgrass Rhizosphere	MASPPDFDPTRHRVHEHAVRPLERSQWRRHGPYLRTLAVAMVLTVAAASAGMLM
Ga0190274_100027033	3300018476	Soil	MVGSRATTEVHPMALPPDSDPTAHRVHDRASRLPEPSNWRLHGPYLRTLAVAIVLTAATASAGMLMALMGD
Ga0173481_103968182	3300019356	Soil	VVHEVPARMVGGRATTEVQSMALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAAAIVLTTAAASAWMLMALMGD
Ga0247794_100428242	3300024055	Soil	MALPPDFDPTAHRVHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGLLMALMGD
Ga0207697_100980851	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTTAAASAWMLMALMGD
Ga0207656_102750282	3300025321	Corn Rhizosphere	MALPPDFDRTAHRVHDRVSRQPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207642_111285081	3300025899	Miscanthus Rhizosphere	PMALPPDFDPTAHRVHDRASRPPETSNWRRHGPYLRTLAVAIVLTAAAASAGVLMALMED
Ga0207645_108855082	3300025907	Miscanthus Rhizosphere	ALSSLMASPPDFDPTRHRVHEHAVRPLERSQWRRHGPYLRTLAVAMVLTVAAASAGMLMALMGD
Ga0207705_110476471	3300025909	Corn Rhizosphere	SVALPPGSNPSKHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207657_109619372	3300025919	Corn Rhizosphere	MVVGRATTQVLPVSPPPRFDPAEHRVHDRVSRPPKPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207657_111391711	3300025919	Corn Rhizosphere	MALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAVAVVLTAAAASAGMLMALMGD
Ga0207649_100527552	3300025920	Corn Rhizosphere	MALPPGFDPNAHRAHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207649_103568312	3300025920	Corn Rhizosphere	MAPPPVFDPSAHRARHRAAQPPETANRRRHGPYLRTLAVAVVLTAAAASAGLLMALIGD
Ga0207649_111340821	3300025920	Corn Rhizosphere	HRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207681_105395711	3300025923	Switchgrass Rhizosphere	RATTEVQPMALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD
Ga0207681_117735672	3300025923	Switchgrass Rhizosphere	MAPPPGFDPTAHRVLDRASRAPGPSNWRRHGPYLRTLAVAIVLTAAAASTGMLMSLGD
Ga0207650_117742432	3300025925	Switchgrass Rhizosphere	EVHPMALPPGFDPTAHRAHDRVSRPPEPSSWRRHGPYLRTLAVALVLTAAAASAGMLMALLGD
Ga0207659_100394021	3300025926	Miscanthus Rhizosphere	SAPMALPPGFDPTSHRVHDRASRPPEPSDWRRHGPHLRTLAVAIVLTAAAASAGMLMALMGD
Ga0207659_113234751	3300025926	Miscanthus Rhizosphere	MALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD
Ga0207701_101734182	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAAAIVLTTAAASAWMLMALMGD
Ga0207701_104193554	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMG
Ga0207701_114460931	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	ARMVAGRATTQVLPVSPPPRFDPAEHRVHDRVSRPSEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207644_113774841	3300025931	Switchgrass Rhizosphere	PPPGFDPTAHRVRDRALRPPEPSKWRRHGPHLRTLAVAIVLTAAAASAGMLIALMGA
Ga0207686_106382692	3300025934	Miscanthus Rhizosphere	IHILARMVGGHATTEVHPMALPPGFDPTAHRVHDRASRPPEPSDWRRHGPHLRTLAVAIVLTAAAASAGMLMALMGD
Ga0207709_100289532	3300025935	Miscanthus Rhizosphere	MALPPGFDPTSHRVHDRASRPPEPSDWRRHGPHLRTLAVAIVLTAAAASAGMLMALMGD
Ga0207669_103755831	3300025937	Miscanthus Rhizosphere	MALPPDFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGVLMALMED
Ga0207669_110729511	3300025937	Miscanthus Rhizosphere	VALPPGSNPSKHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207669_115406011	3300025937	Miscanthus Rhizosphere	MVGSRATTEVHPMALPPGFDPTAHRVHDRVSRPPEPSSWRRHGPYLRTLAVAIVLTAAAASAGMLMTLMGD
Ga0207669_118158632	3300025937	Miscanthus Rhizosphere	RPTTEVHLMALPPGFDRTGHPVHDRVSRPLERSNWRRHGPYLRTLAVALVLTAAAASAGMLMSLMGD
Ga0207665_110905231	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MALPPGLDPTAHRVHDRVSPPPEPSNWRRRGPYLRTLAVALVLTTAAASAGMLMALMGD
Ga0207691_100531991	3300025940	Miscanthus Rhizosphere	LVHAHAARMVAGRATTQVLPVSPPPRFDPAEHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207691_100886231	3300025940	Miscanthus Rhizosphere	MAPPPGFDPTAHRVLDRASRAPGPSNWRRHGPYLRTLAVAIVLTAAAASTGMLMALGD
Ga0207711_109875482	3300025941	Switchgrass Rhizosphere	MALPPDFDPTAHRVHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALLGD
Ga0207711_115797651	3300025941	Switchgrass Rhizosphere	SHNEVQSMALPPGFDPTAHRVHDRVSRPPERSNWRRHGPHLRTLAAALVLTAAAASAGMLMALMGD
Ga0207689_102149381	3300025942	Miscanthus Rhizosphere	AHRVHDRVSPPPERSNWRRHGPYLRTLAVAIVLTTAAASAGMLMALMGD
Ga0207679_101952782	3300025945	Corn Rhizosphere	MALPPGFDPNAHRAHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALLGD
Ga0207651_100981693	3300025960	Switchgrass Rhizosphere	MAPPPDFDPAHRKHRRTARPPEPSSWRRHGSHLRTLAVAVVLTAAAASAGLLMALMGD
Ga0207651_108158522	3300025960	Switchgrass Rhizosphere	PMALPPDFDRTAHRVHDRVSRQPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207651_111823282	3300025960	Switchgrass Rhizosphere	VTLPPRFDPTAHRVHDRVSRPPEHSNWGRHGPYMRTLAVALVLTAAAASAGMLMALMGD
Ga0207668_113769352	3300025972	Switchgrass Rhizosphere	MALPPGFDPTAHRVHDRVSPPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207640_114390621	3300025981	Corn Rhizosphere	KHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207658_118333303	3300025986	Switchgrass Rhizosphere	SAPMALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD
Ga0207678_108782171	3300026067	Corn Rhizosphere	SDPTAHRVHERALRPPEPSNWRRHGPYLRALAVAMVLTVAAASAGMLMALLGD
Ga0207678_112264062	3300026067	Corn Rhizosphere	PGFDPTTHRVHGRASRPPEPSNWRRHWPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207641_106953071	3300026088	Switchgrass Rhizosphere	MALPPGFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGLLMALMG
Ga0207641_116425301	3300026088	Switchgrass Rhizosphere	DGRAKTDAHPMTLPPGFDRTGHRVHDRVSRRPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALLGD
Ga0207648_100292981	3300026089	Miscanthus Rhizosphere	PWHDSCCPAPMAPPPGFDPTAHRAHGRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGD
Ga0207648_111264462	3300026089	Miscanthus Rhizosphere	SPPPRFDPAEHRVHDRVSRPSEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207648_121878701	3300026089	Miscanthus Rhizosphere	ATTQVLPVSPPPRFDPAEHRVHDRVSRPPKPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207676_102444511	3300026095	Switchgrass Rhizosphere	MAPPPVFDPSAHRARHRAAQPPETANRRRHGPYLRTLAVAVVLTAAAASAGLLMASMGD
Ga0207676_117314861	3300026095	Switchgrass Rhizosphere	MVGSHARTEVHPMALPPDFDPTMHRVRDRMSRPPEPSHWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207683_100159451	3300026121	Miscanthus Rhizosphere	TDVQPMALPPGFDPNAQHRVHDRVPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD
Ga0207683_113217652	3300026121	Miscanthus Rhizosphere	ALPPDFDPTAHRVHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALLGD
Ga0207698_108384222	3300026142	Corn Rhizosphere	GTIAAAPALMAPPPGFDPTAHRVRDRALRPPEPSKWRRHGPHLRTLAVAIVLTAAAASAGMLIALMGA
Ga0207698_125352111	3300026142	Corn Rhizosphere	RFDPIAHRVHDRVSRPPEHSNWGRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207428_111602481	3300027907	Populus Rhizosphere	YSGTIDAAPSPMIPPPDSDPTAHRVHERALRPPEPSNWRRHGPYLRALAVAMVLTVAAASAGMLMALLGD
Ga0268264_113271402	3300028381	Switchgrass Rhizosphere	MALPPGFDPTAHRVHDRVSPPPERSNWRRHGPYLRTLAVAIVLTTAAASAGMLMALMGD
Ga0268264_124317072	3300028381	Switchgrass Rhizosphere	MVGSHARTEVHPMALPPDFDPTMHRVRDRMSRPPEPSHWRRHGPYLRTLAVA
Ga0247822_108270362	3300028592	Soil	MALPPGFDPTEHQVHDRGSRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGD
Ga0307506_104222601	3300031366	Soil	MIEVHSMALPPGFDPTEHRARGRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0308174_114790151	3300031939	Soil	MALPPGFDPTAHRVHDRASRPPEHSNWRRHGPQLRSLAVAIVLTAVFASAGVLMALMGD
Ga0308173_100501243	3300032074	Soil	LEVQFMGLPPGFDPAAHGVHDRLPSAPEPSKWRRHGPYLRTLAVALVLTAAAASAGLLMALMGD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F034226

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences