Metagenome / Metatranscriptome Family F033547

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F033547
Family Type	Metagenome / Metatranscriptome
Number of Sequences	177
Average Sequence Length	69 residues
Representative Sequence	MNELSRADAAPWAARGSMFSQPGLARPVAWATPHDLDRLRASHARGRLGKPLVPTSVASPRLGDELFA
Number of Associated Samples	145
Number of Associated Scaffolds	177

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	61.58 %
% of genes near scaffold ends (potentially truncated)	95.48 %
% of genes from short scaffolds (< 2000 bps)	90.96 %
Associated GOLD sequencing projects	134
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.367 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.124 % of family members)
Environment Ontology (ENVO)	Unclassified (20.904 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.198 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.29% β-sheet: 0.00% Coil/Unstructured: 67.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 177 Family Scaffolds
PF00378	ECH_1	6.78
PF12680	SnoaL_2	3.39
PF00296	Bac_luciferase	2.26
PF00589	Phage_integrase	1.69
PF00248	Aldo_ket_red	1.69
PF12697	Abhydrolase_6	1.69
PF03466	LysR_substrate	1.69
PF00561	Abhydrolase_1	1.13
PF00781	DAGK_cat	1.13
PF01053	Cys_Met_Meta_PP	1.13
PF13011	LZ_Tnp_IS481	1.13
PF00155	Aminotran_1_2	1.13
PF08922	DUF1905	1.13
PF08281	Sigma70_r4_2	1.13
PF00289	Biotin_carb_N	0.56
PF13271	DUF4062	0.56
PF13358	DDE_3	0.56
PF01872	RibD_C	0.56
PF00753	Lactamase_B	0.56
PF01934	HepT-like	0.56
PF12893	Lumazine_bd_2	0.56
PF01266	DAO	0.56
PF03928	HbpS-like	0.56
PF02899	Phage_int_SAM_1	0.56
PF02126	PTE	0.56
PF00171	Aldedh	0.56
PF07519	Tannase	0.56
PF01909	NTP_transf_2	0.56
PF08388	GIIM	0.56
PF14559	TPR_19	0.56
PF07992	Pyr_redox_2	0.56
PF00027	cNMP_binding	0.56
PF13298	LigD_N	0.56
PF13578	Methyltransf_24	0.56
PF00571	CBS	0.56
PF13828	DUF4190	0.56
PF05016	ParE_toxin	0.56
PF02909	TetR_C_1	0.56
PF06441	EHN	0.56
PF03976	PPK2	0.56

COG ID	Name	Functional Category	% Frequency in 177 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	2.26
COG1597	Phosphatidylglycerol kinase, diacylglycerol kinase family	Lipid transport and metabolism [I]	2.26
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	1.13
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	1.13
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	1.13
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	1.13
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	1.13
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	1.13
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	1.13
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	1.13
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	1.13
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	1.13
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	1.13
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.56
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.56
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.56
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.56
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.56
COG2445	Uncharacterized HEPN domain protein YutE, UPF0331/DUF86 family	General function prediction only [R]	0.56
COG2361	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	0.56
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.56
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.56
COG1735	Predicted metal-dependent hydrolase, phosphotriesterase family	General function prediction only [R]	0.56
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.56
COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	Transcription [K]	0.56
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.56

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.37 %
Unclassified	root	N/A	44.63 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.37 %
Unclassified	root	N/A	44.63 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.37 %
Unclassified	root	N/A	44.63 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	45.20 %
Unclassified	root	N/A	44.63 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.63 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	42.37 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.69 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.63 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	37.29 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.13 %
Caldilineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae	0.56 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.63 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	7.34 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.82 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.69 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.69 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1.69 %
Chloroflexi bacterium 13_1_40CM_2_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_2_68_14	0.56 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.56 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.56 %
Caldilineales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales	0.56 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.56 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.63 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	4.52 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	2.26 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.82 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	1.69 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1.69 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.69 %
Caldilineaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae	0.56 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.56 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.56 %
Chloroflexi bacterium 13_1_40CM_2_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_2_68_14	0.56 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.56 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.56 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.63 %
Nonomuraea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea	4.52 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	2.26 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.82 %
Marmoricola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Marmoricola	1.69 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.69 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.56 %
Rhodococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus	0.56 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.56 %
Litorilinea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Litorilinea	0.56 %
Actinocorallia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinocorallia	0.56 %
Chloroflexi bacterium 13_1_40CM_2_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_2_68_14	0.56 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.56 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.56 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.63 %
Nonomuraea typhae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea typhae	4.52 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2.26 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.82 %
Marmoricola pocheonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Marmoricola → Marmoricola pocheonensis	1.69 %
Litorilinea aerophila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Litorilinea → Litorilinea aerophila	0.56 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.56 %
unclassified Nocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → unclassified Nocardia	0.56 %
unclassified Actinocorallia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinocorallia → unclassified Actinocorallia	0.56 %
Streptomyces atratus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces atratus	0.56 %
Streptomyces lincolnensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces lincolnensis	0.56 %
Pseudonocardia ammonioxydans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia ammonioxydans	0.56 %
Rhodococcus jostii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus jostii	0.56 %
Chloroflexi bacterium 13_1_40CM_2_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_2_68_14	0.56 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.56 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.56 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.63 %
Nonomuraea typhae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea typhae	4.52 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2.26 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.82 %
Marmoricola pocheonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Marmoricola → Marmoricola pocheonensis	1.69 %
Streptomyces sp. uw30	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. uw30	0.56 %
Nocardia sp. alder85J	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → unclassified Nocardia → Nocardia sp. alder85J	0.56 %
Actinocorallia sp. API 0066	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinocorallia → unclassified Actinocorallia → Actinocorallia sp. API 0066	0.56 %
Litorilinea aerophila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Litorilinea → Litorilinea aerophila	0.56 %
Streptomyces atratus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces atratus	0.56 %
Streptomyces lincolnensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces lincolnensis	0.56 %
Pseudonocardia ammonioxydans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia ammonioxydans	0.56 %
Rhodococcus jostii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus jostii	0.56 %
Chloroflexi bacterium 13_1_40CM_2_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_2_68_14	0.56 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.56 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.56 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.56 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_110418104	Not Available	625	Open in IMG/M
3300000956\|JGI10216J12902_115784189	Not Available	512	Open in IMG/M
3300001593\|JGI12635J15846_10173584	All Organisms → cellular organisms → Bacteria	1453	Open in IMG/M
3300001593\|JGI12635J15846_10591061	Not Available	646	Open in IMG/M
3300001648\|JGI20242J16303_102465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces lincolnensis	927	Open in IMG/M
3300003505\|JGIcombinedJ51221_10166436	Not Available	892	Open in IMG/M
3300003505\|JGIcombinedJ51221_10255383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → unclassified Nocardia → Nocardia sp. alder85J	712	Open in IMG/M
3300004635\|Ga0062388_102928655	Not Available	504	Open in IMG/M
3300005341\|Ga0070691_10325528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea typhae	847	Open in IMG/M
3300005363\|Ga0008090_14968376	Not Available	561	Open in IMG/M
3300005434\|Ga0070709_11209262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea typhae	607	Open in IMG/M
3300005435\|Ga0070714_100335455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1417	Open in IMG/M
3300005435\|Ga0070714_102373250	Not Available	515	Open in IMG/M
3300005436\|Ga0070713_102276121	Not Available	525	Open in IMG/M
3300005437\|Ga0070710_11519480	Not Available	504	Open in IMG/M
3300005439\|Ga0070711_100030655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3563	Open in IMG/M
3300005456\|Ga0070678_100315410	All Organisms → cellular organisms → Bacteria	1333	Open in IMG/M
3300005468\|Ga0070707_100430006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1281	Open in IMG/M
3300005471\|Ga0070698_100514943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1135	Open in IMG/M
3300005518\|Ga0070699_102130888	Not Available	512	Open in IMG/M
3300005538\|Ga0070731_10722432	Not Available	662	Open in IMG/M
3300005541\|Ga0070733_10154008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1492	Open in IMG/M
3300005544\|Ga0070686_101333316	Not Available	600	Open in IMG/M
3300005547\|Ga0070693_100203950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1286	Open in IMG/M
3300005568\|Ga0066703_10305100	Not Available	962	Open in IMG/M
3300005602\|Ga0070762_10797440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	639	Open in IMG/M
3300005610\|Ga0070763_10189781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1092	Open in IMG/M
3300005610\|Ga0070763_10218355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1022	Open in IMG/M
3300005610\|Ga0070763_10398752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	773	Open in IMG/M
3300005617\|Ga0068859_102547190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_2_68_14	563	Open in IMG/M
3300005712\|Ga0070764_10036902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2476	Open in IMG/M
3300005764\|Ga0066903_100376102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2318	Open in IMG/M
3300005764\|Ga0066903_105271621	Not Available	683	Open in IMG/M
3300006028\|Ga0070717_11477975	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300006175\|Ga0070712_100549776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	973	Open in IMG/M
3300006175\|Ga0070712_101195078	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300006176\|Ga0070765_100270488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1563	Open in IMG/M
3300006176\|Ga0070765_100298059	Not Available	1489	Open in IMG/M
3300006176\|Ga0070765_101149486	Not Available	733	Open in IMG/M
3300006358\|Ga0068871_100721091	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300006755\|Ga0079222_11158526	Not Available	687	Open in IMG/M
3300006804\|Ga0079221_11453983	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300006806\|Ga0079220_10240352	Not Available	1076	Open in IMG/M
3300006871\|Ga0075434_100707540	Not Available	1025	Open in IMG/M
3300006954\|Ga0079219_10071829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1587	Open in IMG/M
3300009143\|Ga0099792_10256457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea typhae	1020	Open in IMG/M
3300009174\|Ga0105241_12700075	Not Available	500	Open in IMG/M
3300009177\|Ga0105248_11554555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea typhae	749	Open in IMG/M
3300009624\|Ga0116105_1106879	Not Available	706	Open in IMG/M
3300009628\|Ga0116125_1229309	Not Available	535	Open in IMG/M
3300009665\|Ga0116135_1369867	Not Available	577	Open in IMG/M
3300010046\|Ga0126384_11120064	Not Available	722	Open in IMG/M
3300010048\|Ga0126373_13220664	Not Available	508	Open in IMG/M
3300010373\|Ga0134128_10610072	Not Available	1214	Open in IMG/M
3300010373\|Ga0134128_11286029	All Organisms → cellular organisms → Bacteria → Proteobacteria	806	Open in IMG/M
3300010376\|Ga0126381_104341818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	549	Open in IMG/M
3300010396\|Ga0134126_11517951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea typhae	738	Open in IMG/M
3300010401\|Ga0134121_11547652	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300010403\|Ga0134123_11994921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea typhae	638	Open in IMG/M
3300012189\|Ga0137388_11836179	Not Available	537	Open in IMG/M
3300012203\|Ga0137399_11105950	Not Available	667	Open in IMG/M
3300012210\|Ga0137378_10517299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1101	Open in IMG/M
3300012210\|Ga0137378_10687052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	934	Open in IMG/M
3300012498\|Ga0157345_1019134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	681	Open in IMG/M
3300014201\|Ga0181537_10169885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinocorallia → unclassified Actinocorallia → Actinocorallia sp. API 0066	1498	Open in IMG/M
3300014201\|Ga0181537_10377586	Not Available	973	Open in IMG/M
3300014325\|Ga0163163_10215271	Not Available	1970	Open in IMG/M
3300014489\|Ga0182018_10759731	Not Available	503	Open in IMG/M
3300015372\|Ga0132256_103470226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	530	Open in IMG/M
3300015373\|Ga0132257_102757851	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300016357\|Ga0182032_10985313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	719	Open in IMG/M
3300016387\|Ga0182040_10834839	Not Available	761	Open in IMG/M
3300016404\|Ga0182037_10879722	Not Available	776	Open in IMG/M
3300017934\|Ga0187803_10394736	Not Available	560	Open in IMG/M
3300017942\|Ga0187808_10262029	Not Available	775	Open in IMG/M
3300017946\|Ga0187879_10019526	All Organisms → cellular organisms → Bacteria	4193	Open in IMG/M
3300017966\|Ga0187776_10029599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3038	Open in IMG/M
3300017972\|Ga0187781_11326885	Not Available	531	Open in IMG/M
3300017974\|Ga0187777_10518678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	834	Open in IMG/M
3300017974\|Ga0187777_11455493	Not Available	507	Open in IMG/M
3300018006\|Ga0187804_10346949	Not Available	652	Open in IMG/M
3300018037\|Ga0187883_10117284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1378	Open in IMG/M
3300018038\|Ga0187855_10862704	Not Available	528	Open in IMG/M
3300019361\|Ga0173482_10196607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea typhae	823	Open in IMG/M
3300020579\|Ga0210407_10817820	Not Available	718	Open in IMG/M
3300020581\|Ga0210399_10123106	All Organisms → cellular organisms → Bacteria	2132	Open in IMG/M
3300020582\|Ga0210395_10868080	Not Available	671	Open in IMG/M
3300020582\|Ga0210395_11313440	Not Available	529	Open in IMG/M
3300021088\|Ga0210404_10256280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	953	Open in IMG/M
3300021180\|Ga0210396_10612664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	946	Open in IMG/M
3300021180\|Ga0210396_11662656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	520	Open in IMG/M
3300021403\|Ga0210397_10362658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia ammonioxydans	1076	Open in IMG/M
3300021405\|Ga0210387_11202788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Litorilinea → Litorilinea aerophila	658	Open in IMG/M
3300021407\|Ga0210383_11145652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	655	Open in IMG/M
3300021407\|Ga0210383_11730573	Not Available	511	Open in IMG/M
3300021433\|Ga0210391_11151052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	601	Open in IMG/M
3300021474\|Ga0210390_10892444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	731	Open in IMG/M
3300021477\|Ga0210398_11558450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	513	Open in IMG/M
3300021478\|Ga0210402_10233115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1697	Open in IMG/M
3300025412\|Ga0208194_1067855	Not Available	545	Open in IMG/M
3300025898\|Ga0207692_10064162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1911	Open in IMG/M
3300025898\|Ga0207692_10152580	Not Available	1324	Open in IMG/M
3300025898\|Ga0207692_10298590	Not Available	980	Open in IMG/M
3300025899\|Ga0207642_10198149	Not Available	1107	Open in IMG/M
3300025905\|Ga0207685_10109958	All Organisms → cellular organisms → Bacteria	1193	Open in IMG/M
3300025906\|Ga0207699_10648221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	771	Open in IMG/M
3300025916\|Ga0207663_10591296	Not Available	871	Open in IMG/M
3300025916\|Ga0207663_10764948	Not Available	768	Open in IMG/M
3300025918\|Ga0207662_11116006	Not Available	561	Open in IMG/M
3300025928\|Ga0207700_11767040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	544	Open in IMG/M
3300025929\|Ga0207664_10063919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2942	Open in IMG/M
3300025939\|Ga0207665_11068703	Not Available	643	Open in IMG/M
3300026089\|Ga0207648_11749838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea typhae	583	Open in IMG/M
3300026330\|Ga0209473_1261109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	590	Open in IMG/M
3300027334\|Ga0209529_1055885	All Organisms → cellular organisms → Bacteria → Terrabacteria group	672	Open in IMG/M
3300027334\|Ga0209529_1085973	Not Available	533	Open in IMG/M
3300027619\|Ga0209330_1098328	Not Available	665	Open in IMG/M
3300027725\|Ga0209178_1014090	Not Available	2505	Open in IMG/M
3300027829\|Ga0209773_10026757	All Organisms → cellular organisms → Bacteria	2277	Open in IMG/M
3300027829\|Ga0209773_10144404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	990	Open in IMG/M
3300027846\|Ga0209180_10606488	Not Available	604	Open in IMG/M
3300027855\|Ga0209693_10324641	Not Available	749	Open in IMG/M
3300027867\|Ga0209167_10162670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1176	Open in IMG/M
3300027879\|Ga0209169_10006813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6560	Open in IMG/M
3300027908\|Ga0209006_10064510	All Organisms → cellular organisms → Bacteria	3272	Open in IMG/M
3300027910\|Ga0209583_10099235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1119	Open in IMG/M
3300028742\|Ga0302220_10133902	Not Available	953	Open in IMG/M
3300028789\|Ga0302232_10632244	Not Available	526	Open in IMG/M
3300028806\|Ga0302221_10139741	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1067	Open in IMG/M
3300028808\|Ga0302228_10315316	Not Available	699	Open in IMG/M
3300028906\|Ga0308309_10979690	Not Available	733	Open in IMG/M
3300028906\|Ga0308309_11646437	Not Available	545	Open in IMG/M
3300029943\|Ga0311340_10303031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1521	Open in IMG/M
3300029944\|Ga0311352_10840074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	715	Open in IMG/M
3300029999\|Ga0311339_10060954	All Organisms → cellular organisms → Bacteria	4951	Open in IMG/M
3300029999\|Ga0311339_10182250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2407	Open in IMG/M
3300029999\|Ga0311339_10299797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1730	Open in IMG/M
3300030013\|Ga0302178_10101919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1475	Open in IMG/M
3300030013\|Ga0302178_10334876	Not Available	688	Open in IMG/M
3300030043\|Ga0302306_10208581	Not Available	751	Open in IMG/M
3300030054\|Ga0302182_10375517	Not Available	596	Open in IMG/M
3300030056\|Ga0302181_10464719	Not Available	537	Open in IMG/M
3300030494\|Ga0310037_10188121	Not Available	921	Open in IMG/M
3300030520\|Ga0311372_11839526	Not Available	720	Open in IMG/M
3300030617\|Ga0311356_10351250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1466	Open in IMG/M
3300030743\|Ga0265461_10703561	Not Available	913	Open in IMG/M
3300030862\|Ga0265753_1010433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1210	Open in IMG/M
3300031236\|Ga0302324_102854645	Not Available	579	Open in IMG/M
3300031236\|Ga0302324_103543006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	505	Open in IMG/M
3300031525\|Ga0302326_10312313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2502	Open in IMG/M
3300031525\|Ga0302326_11984854	Not Available	752	Open in IMG/M
3300031564\|Ga0318573_10778312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Marmoricola → Marmoricola pocheonensis	514	Open in IMG/M
3300031573\|Ga0310915_10993738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Marmoricola → Marmoricola pocheonensis	586	Open in IMG/M
3300031708\|Ga0310686_108850699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	863	Open in IMG/M
3300031713\|Ga0318496_10244823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. uw30	988	Open in IMG/M
3300031715\|Ga0307476_10226104	Not Available	1363	Open in IMG/M
3300031715\|Ga0307476_10294686	Not Available	1189	Open in IMG/M
3300031723\|Ga0318493_10519790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Marmoricola → Marmoricola pocheonensis	659	Open in IMG/M
3300031796\|Ga0318576_10216712	Not Available	901	Open in IMG/M
3300031823\|Ga0307478_10344533	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300031823\|Ga0307478_11428116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	574	Open in IMG/M
3300031947\|Ga0310909_10806947	Not Available	775	Open in IMG/M
3300031954\|Ga0306926_12644471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	546	Open in IMG/M
3300031962\|Ga0307479_11618427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	603	Open in IMG/M
3300032010\|Ga0318569_10374078	Not Available	664	Open in IMG/M
3300032025\|Ga0318507_10238167	Not Available	789	Open in IMG/M
3300032205\|Ga0307472_102694346	Not Available	508	Open in IMG/M
3300032892\|Ga0335081_10581271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1387	Open in IMG/M
3300032895\|Ga0335074_11367249	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300032898\|Ga0335072_10091295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3921	Open in IMG/M
3300032955\|Ga0335076_10336099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1397	Open in IMG/M
3300032955\|Ga0335076_10795600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces atratus	827	Open in IMG/M
3300033158\|Ga0335077_10216854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus jostii	2140	Open in IMG/M
3300033158\|Ga0335077_11999145	Not Available	538	Open in IMG/M
3300033289\|Ga0310914_11899342	Not Available	500	Open in IMG/M
3300034124\|Ga0370483_0047150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1350	Open in IMG/M
3300034199\|Ga0370514_033097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1283	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.22%
Host-Associated	Host-Associated	6.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.18%
Aquatic	Environmental → Aquatic	9.04%
Plants	Host-Associated → Plants	6.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.88%
Peat	Environmental → Terrestrial → Peat	11.30%
Freshwater	Environmental → Aquatic → Freshwater	8.47%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.39%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.26%
Roots	Host-Associated → Plants → Roots	1.13%
Sediment	Environmental → Aquatic → Sediment	0.56%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.29%
Loam	Environmental → Terrestrial → Soil → Loam	27.68%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	11.30%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.47%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.69%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.56%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.56%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.56%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.99%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	11.30%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.34%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.52%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.82%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.26%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.26%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.69%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.56%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.56%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.56%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.12%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.86%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	11.30%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.08%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.95%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.39%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.39%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.82%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.26%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.26%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.69%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.69%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.69%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.69%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.13%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.13%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.13%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.13%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.13%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.56%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.56%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.56%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.56%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.56%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.56%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.56%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.56%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.56%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.56%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.56%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.56%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001648	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012498	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410	Host-Associated	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025412	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300027334	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028742	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1104181042	3300000956	Soil	MNKLSRADAAPWAARGSMFSQPGLARPVAWDTPHDLDRLRASHARGRPGKPLVPTSVASPRLGDELFARLLA
JGI10216J12902_1157841891	3300000956	Soil	VTAMNDLSRAAAPGAAHGPMFSRPGLARPVAWATPHDLDRLRASQARGALGKPLVPASVASPRLGDELFARLVS
JGI12635J15846_101735841	3300001593	Forest Soil	VIAMNELSRTAVPWAPRGPAFSQPGLTRPVAWATPHDLDRLRASHARGRPDKPLVPVSVASPRLGDELFARLLSYGTPHE
JGI12635J15846_105910612	3300001593	Forest Soil	VAAMDELSRAAGGPWAVRGPVFSQPGLARPEAWAAPDDLDRLRARHARGRPDQPLVPVSVAS
JGI20242J16303_1024653	3300001648	Forest Soil	MNELSPTAVPWAARGPVFSQPGLTRPVAWAAPDDLDRLRASHARGQLGEPLVPASVASPRLGDELFARLL
JGIcombinedJ51221_101664362	3300003505	Forest Soil	VTAMNELSRTAATPWAARGPMFSQPGLTRPVAWAAPHDLDRLRASPARGQRGEPLVPTSV
JGIcombinedJ51221_102553832	3300003505	Forest Soil	MNELSRTAAAPWAARGPVFSQPGLARPVAWATPHDLDRLRASRARGGPGEPLVPTSVASPRLGDELFARLLSYGTP
Ga0062388_1029286551	3300004635	Bog Forest Soil	VTSMNELSHAAAAPWAARGPMFSQPGLARPVAWATPHDLDGLRASQAREQLGKPLVPTSVASPRLGDE
Ga0070691_103255281	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MNKLSRADAAPWAARGSMFSQAGLARPVDWATPRDLDRLRASHARGRPDKPLVPTSVASPRLGDELFARLLAYGTPQ
Ga0008090_149683761	3300005363	Tropical Rainforest Soil	VTAMDERSRADAAPWAGRGSVFSQAGLSRPVDWATPDDLDRLRASHGRRRWDRSLVPANVASPRLGDELFARLVSYGT
Ga0070709_112092621	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VTAMNKLSRADAAPWAARGSMFSQAGLARPVDWATATPRDLDRLRASHARGRPDRPLVPTSVASPRLGDELFARL
Ga0070714_1003354551	3300005435	Agricultural Soil	VTAMNELSRAGAAPWAGRGSVFSQPGLARPVAWATPHDLDRLRASHGRRRLGKPLVPTSVASPRLGDELFAR
Ga0070714_1023732501	3300005435	Agricultural Soil	MNKLSRADAAPWAARGSMFSQAGLARPVDWATPRDLDRLRASHARGRPDRPLVPTSVASPRLGDELFARL
Ga0070713_1022761212	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MDELSPAAAPPWAARGPMFSQPGLARPVAWATPRDLDRLRASHARGRPGKPLVPTSVASPRLGDE
Ga0070710_115194802	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MNKLSRADAAPWAARGPMFSQAGLARPVDWATPRDLDQLRASRARGRRDRPLVPTSVASPRLGDELFARLLAYGTPQQ
Ga0070711_1000306555	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MNKLSRAAVAPWARRGSMFSQAGLARPVDWASPRDLDRLRASRARERLDRPLVPTSVASPRLGEELF
Ga0070678_1003154101	3300005456	Miscanthus Rhizosphere	VTAMDERSRADAPPWAGRGSVFSQAGLAPPVDWATPHDLDRLRASHGRRRLGRPLVPTSV
Ga0070707_1004300061	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VTTMNELSRADAAPWAARGSMFSQPGLARPVAWSTPHDLDRLRASHARGRPDKPLV
Ga0070698_1005149431	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MDDLSRAAAAPWAARGPVFSRPGLARPVAWAAPDDLDRLRARQARGALGKPLVPASVASPRLGDELFARLLAYGTP
Ga0070699_1021308881	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MNDLSRAAAAHWAAGGPVFSRPGLARPVARAAPDDLDRQRASQARGALGKPLVPASV
Ga0070731_107224321	3300005538	Surface Soil	MSELSRTAAAPWAARGPVFSQPGLARPVAWATPDELDGLRAGHARGRLGQPLVPTSVASPRLGDELFA
Ga0070733_101540083	3300005541	Surface Soil	VITVKDLSRTAAAPWAARGPMFSQAGLARPVAWATPRDLDRLRASHPRGRLDKPLVPVSVASPR
Ga0070686_1013333162	3300005544	Switchgrass Rhizosphere	MDERSRADAAPWAGRGSVFSQAGLARPADWATPDDLDRLRASHGRRRLGRPLVPTS
Ga0070693_1002039501	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	VTAMDERSRADAAPWAGRGSVFSQAGLARPADWATPDDLDRLRASHGRRRLGRPLVPTSVSSPRLDDDLFARLLSYGT
Ga0066703_103051002	3300005568	Soil	MDELSPAAAPPWAARDSMFSQPGLARPVAWTKPRDLDRLRASHARGRPGKPLVPTSVASPRLG
Ga0070762_107974401	3300005602	Soil	VTAMDELSPAVAAPWAARGSMFSQAGLARPVDWATPRDLDRLRASRPRGRPGKPLVPVSVASPRLGDELFARLLAYGTPQ
Ga0070763_101897811	3300005610	Soil	MNELSRTAAAPWAARGPVFSQPGLARPVAWATPHDLDRLRASHARGQLGKPLVPTSVASPRLGDEL
Ga0070763_102183554	3300005610	Soil	VIAMKKLSRPAAAPWAARGPAFSQPGLARPVAWATPDDLDRLRASHARGQLGEPLVPTSVASPRLGDELFARLLTYG
Ga0070763_103987522	3300005610	Soil	VAAMNEPSRAADAPWAARGSMFSQAGLARPVTWATPQDLDRLRASRGRGRLGEPLVPTSVASPRLSDELFARL
Ga0068859_1025471902	3300005617	Switchgrass Rhizosphere	VTAMDERSRADAAPWAGRGSVFSQAGLARPADWATPDDLDRLRASHGRRRLGRPLVPTSV
Ga0070764_100369024	3300005712	Soil	MNELSRTAAAPWAARGPVFSQPGLARPVAWAAPHDLDRLRASRARGGPGEPLVPTSVASPRLGDELFARLLSYGT
Ga0066903_1003761021	3300005764	Tropical Forest Soil	VTAMDGRSRAGAAPWAGRGSVFSQAGLARPVDWATPHDLDRLRASHGRRRLGGPLVPTSVASPRLGDELFARL
Ga0066903_1052716211	3300005764	Tropical Forest Soil	VTAMDERSRAGAAPWAGRGSVFSQAGLARPVDWATPHDLDQLRASHGRRRLGRPLVPTSVASPRLGDELFAR
Ga0070717_114779751	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VTAMNEPSPATAAPWAARGSLFSQPGLARPVTGATPHDLDRLRASHARGRLGKPLVPTSV
Ga0070712_1005497761	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNELPRAAVAPWARRGSMFSQAGLARPVDWASPRDLDRLRASRARERLDRPLVPTSVASPRLG
Ga0070712_1011950781	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNELSRTAAAPWAARGPVFSQPGLARPVAWATPPDLDRLRASHARGQLGKPLVPTSVASPRLGDELFARLL
Ga0070765_1002704881	3300006176	Soil	MNELSRTAAAPWAARGPVFSQPGLARPVAWATPHDVDRQRASHARGQLGKPLVPTSVASPRLGDELFARLLT
Ga0070765_1002980592	3300006176	Soil	VTAMNEPSRAVGPPWAARGSMFSQPGLARPVAWATPQDLGRLRASHARARPGKPLVPTSV
Ga0070765_1011494861	3300006176	Soil	MDERSRAGAAPWAAGGSAFSQAGLARPVDWATADDLDRLRASHPRRRPGTPLVPTSVASPRLGDELFARLLSYGTPQ
Ga0068871_1007210912	3300006358	Miscanthus Rhizosphere	VTAMDERSRADAPPWAGRGSVFSQAGLARPADWATPDDLDRLRASHGRRRLGRPLVPTSVASPRL
Ga0079222_111585262	3300006755	Agricultural Soil	VTSMSDLSRAAAAPWAAGGPVFSRPGLVRPVAGAAPDDLDRLRAGQARGALGKPLVPASV
Ga0079221_114539832	3300006804	Agricultural Soil	MNDPSRTAAAPRAARGPRFSQPGLARPVAWTAPHDLDRLRASHARRQLGKPLVPTSVASPRLGDELFARLLAYGTPH
Ga0079220_102403522	3300006806	Agricultural Soil	MNKPSRADAAPWAARGSMFSQAGLARPVDWATPRDLDRLRASHARGRPDRPLVPTSVASPRLGDELFARLLAYGTPQQ
Ga0075434_1007075402	3300006871	Populus Rhizosphere	VTAMDERSRADAAPWAGRGSVFSQAGLARPVAWATPHDLDRLRASHGRRRLGRPLVPTSVASPRLDDELFAR
Ga0079219_100718293	3300006954	Agricultural Soil	MNELSRAAVAPWARRGSMFSQAGLARPVDWASPRDLDRLRASRARERLDRPLVPTSVASPRLGEELFARLLAYGTPQQT
Ga0099792_102564572	3300009143	Vadose Zone Soil	MNELSRADAAPWAARGSMFSQPGLARPVAWDTPHDLDRLRASHARGRPGKPLVPTSVASP
Ga0105241_127000752	3300009174	Corn Rhizosphere	MNDLSRTAAAPWAARGPVFSRPGLARPVAWAAPDDLDRLRARQAGGALGKPLVPASVASPRLG
Ga0105248_115545551	3300009177	Switchgrass Rhizosphere	MNKLSRADAAPWAARGSMFSQAGLARPVDWATPRDLDRLRASHARGRPDKPLVPTSVASPRLGDELFARLLAYG
Ga0116105_11068791	3300009624	Peatland	MDELSRAAGAPWAARGSMFSQPGLARPVAWAAPHDLDRLRASHARGRVGEPLVPTSVAS
Ga0116125_12293091	3300009628	Peatland	MDELSRAAAPWAARGSMFSQPGLARPVAWASAHDLDRLRASHARGRLGKPLVPAGVASPRLGDELAVNSESAAAAIRSW*
Ga0116135_13698671	3300009665	Peatland	MDELSRAAGAPWAARGSMFSQPGLARPVAWATPHDLDRLRASHARGQLGEPLVPTSVASPRLGAELFARLLAYGT
Ga0126384_111200641	3300010046	Tropical Forest Soil	MDGRSRADAAPWAGRGSVFSQAGLARPVDWATPHDLDRLRASHGRRRLGGPLVPTSVASPRLGDELF
Ga0126373_132206641	3300010048	Tropical Forest Soil	MNKMSRTDAAHGPVFSQAGLARPVDWATPDDLDRLRTRRARAQPGRPLVPTSVASPRLRDELFARLLT
Ga0134128_106100721	3300010373	Terrestrial Soil	MNELPRADAAPAAARGSMFSQPGLARPVAWATPHDLDRLRASHGRGRLDKPLVPTNVASPRLGDELFARLLAYGTPQ
Ga0134128_112860291	3300010373	Terrestrial Soil	MNKLSRADAAPWAARGSMFSQAGLARPVDWATPRDLDRLRASHARGRPDRPLVPTSVASPRLGD
Ga0126381_1043418182	3300010376	Tropical Forest Soil	MNELSRATAAPWARRGSMFSQAGLARPVDWATPRDLDRLRASRGRGPLSKPLV
Ga0134126_115179511	3300010396	Terrestrial Soil	MNKLSRADAAPWAARGSMFSQAGLARPVDWATPRDLDRLRASHARGRPDRPLVPTSVASPRLGDELFARLL
Ga0134121_115476522	3300010401	Terrestrial Soil	MDERSRADAPPWAGRGSVFSQAGLAPPVDWATPHDLDRLRASHGRRRLGRPLVPTSVSSPRLDD
Ga0134123_119949212	3300010403	Terrestrial Soil	MNKLSRADAAPWAARGSMFSQAGLARPVDWATPRDLDRLRASHARGRPDKPLVPTSVASPRLGDELFAR
Ga0137388_118361791	3300012189	Vadose Zone Soil	MDELSPATAAPWAARGSMFSQPGLARPVAWATPRDLDRLRASHARGRPGKPLVPTSVASPRLGDELFARLL
Ga0137399_111059501	3300012203	Vadose Zone Soil	VSAMDELSRADAAPGAARGSMFSQPGLAGPAAGATPQDLDRLRARHASRRRGKPLVP
Ga0137378_105172991	3300012210	Vadose Zone Soil	MNELSRADAAPWAARGSMFSQPGLARPVAWATPHDLDRLRASHARGRLGKPLVPTSVASPRLGDELFA
Ga0137378_106870523	3300012210	Vadose Zone Soil	MDELSPAATAPWAARGSMFSQAGLARPVDWATPRDLDRLRASHGRGRLGKPLVP
Ga0157345_10191341	3300012498	Arabidopsis Rhizosphere	MDERSRADAAPWAGRGSVFSQAGLARPVDWATPHDLDRLRASHGRRRLGRPLVPTSVASPRL
Ga0181537_101698851	3300014201	Bog	MNELSRTAVPWASRGPAFSQPGLTRPVAWATPHDLDRLRASHARGRPDKPLVPTSVASPRLGDEL
Ga0181537_103775861	3300014201	Bog	MDELSRAAGAPRAARGSMFSQPGLARPVAWAAPHDLDRLRARQPRGQLGTPLVPTSVASPRLGDELFARLLTY
Ga0163163_102152712	3300014325	Switchgrass Rhizosphere	MNKLSRADAAPWAARGSMFSQAGLARPVDWATATPRDLDRLRASHARGRPDRPLVPTSVASPRLGDELFARLLAYGTPQQT
Ga0182018_107597312	3300014489	Palsa	MDELSPAATAPWAARGSMFSQPGLARPVAWATPHDLDRQRASHTHGQLGEPLVPTGVASPRLGD*
Ga0132256_1034702261	3300015372	Arabidopsis Rhizosphere	MNELSRTAAAPWAARGPAFSQPGLARPSAWGTPHDLDQLRASHARGRLGKPLVPTSVASPRLGDELFARLLAYGTPHEIH
Ga0132257_1027578511	3300015373	Arabidopsis Rhizosphere	MDERSRAGAAPWGARGSVFSQAGLARPVAWDTPHDLDRLRASHGRRRLGRSLVPTSVASPRLED
Ga0182032_109853132	3300016357	Soil	MDELSRAATAPWAERGPVLSQPGLARPVAWTAPHDLDRLRAGHGRGRLGTPLVPTSVASPRLGDELFARLLTYGTP
Ga0182040_108348391	3300016387	Soil	MDEPSPAANAPWAARGPVFSQPGLARPVAWTKPHDLERLRASHGRGRLGKPLVPISVASPRLADELFA
Ga0182037_108797221	3300016404	Soil	MDEPSPAANAPWAARGPVFSQPGLARPVAWTKPHDLERLRASHGRGRLGKPLVPISVA
Ga0187803_103947362	3300017934	Freshwater Sediment	VTSMDELSRTAAAPWAADSPMFSQPGLARPVAWATPHDLDRLRASHGRGALGKPLVPTSVASPRLG
Ga0187808_102620291	3300017942	Freshwater Sediment	VTAMNELSPADAAPWAARGSLFSQPGLARPVAWATPHELDRLRAGHKRRGPGKPLVPTSVASPRLGDELF
Ga0187879_100195262	3300017946	Peatland	MDELSRAVGAPWAARGSMFSQPGLARPVAWATPHDLDRQRASHTHGQLGEPLVPTGVASPRLGD
Ga0187776_100295991	3300017966	Tropical Peatland	VAPMDQRSRADAAPWAGRGSVFSQAGLAPPVDWATPHDLDRLRASHGRRRLGRPLVPTSVASPRLDD
Ga0187781_113268851	3300017972	Tropical Peatland	MDELSRAATVPWAARGAVFSQAGLARPVAWASPQDLDRLRARHPRGRLGRPLVPVSEA
Ga0187777_105186782	3300017974	Tropical Peatland	VTAMDERSRAGAAPWAGRGSVFSQAGLARPVAWDTPRDLDRLRASRPRRRPGGPLVPASV
Ga0187777_114554931	3300017974	Tropical Peatland	MDEPSRAATAPWAARGAMFSQAGLARPVARASPQDLNRLRARHPRGRLDRPLVPDSEASPRL
Ga0187804_103469491	3300018006	Freshwater Sediment	VTGMSELSRTAAAPWAARGPAFSQPGLARPVAWATPDELDGLRASHARGRPGQPLVPTSVASPRLGDELFARLLAYGTR
Ga0187883_101172842	3300018037	Peatland	MDELSRAVAAPWAARGSMFSQPGLARPVAWATPHDLDRQRASHTHGQLGEPLVPTGVASPRLGD
Ga0187855_108627041	3300018038	Peatland	GRVAESVTSMDELSRAVAAPWAARGSVFSRPGLARPVAWATPHDLDRLRASHARGRLGEPLVPTSVASPRLGDELAVNSESAAAAVRSW
Ga0173482_101966071	3300019361	Soil	VTAMNKLSRADAAPWAARGSMFSQPGLARPVAWATPHDLDRLRSSHARGRPGKPLVPTSVASPRLGDELF
Ga0210407_108178202	3300020579	Soil	VTAMDELSPAAAPPWAARGSMFSQAGLARPVDWATPRDLDRIRASHGRGRPGKPLVPTSVASPRLGDELFARLLAY
Ga0210399_101231064	3300020581	Soil	MNELSRTAAAPWAARGPMFSQPGLARPVASATPHDLDRLRASHARGQLGKPLVPTSVASPRLGDELFARLLT
Ga0210395_108680801	3300020582	Soil	MNDLPRAAAAPWAARGSMFSQPGLARPVAWAAPHDLDRLRASQARGALGKPLVPASVA
Ga0210395_113134401	3300020582	Soil	VTAMDEPSRTAAAPWAARGPMFSQPGLARPVAWAKPHDLDRLRAGDARGQLGKPLVPTSVASPRLGDEL
Ga0210404_102562802	3300021088	Soil	MNELSRTAAAPWAARGPVFSQPGLARPVAWASPHDLDRLRASHARGQLGKPLVPTSVASPRLGDELFARLLTY
Ga0210396_106126642	3300021180	Soil	VTAMDRRSRAEAAPWAGRGAMFSQAGLARPVPWATPRDLDRLRASHARGGRPGKPLVPTSVASPRLGDELFARLLSYGT
Ga0210396_116626562	3300021180	Soil	VTVMNELSRTAATPWPARGPAFSQPGLARPVAWAAPDDLDRLRASRARGQLGKPLVP
Ga0210397_103626581	3300021403	Soil	VTAMDELSRTGAAPWAAPGPMFSQPGLARPVAWATPHDLDRLRASHARGQLGKPLVPTSVASPRLGDELF
Ga0210387_112027882	3300021405	Soil	VTAMDELSPAAAAPWAARGSMFSQAGLARPVDWATPRDLDRLRASHGRGRLGKPLVPTSVASPRLGDELFARLLAYGT
Ga0210383_111456521	3300021407	Soil	VTSMNDLSRAAAAPWAARGPMFSRPGLARPVAWAGPRDLDRLRASQARGAPGKPLVPASVAS
Ga0210383_117305732	3300021407	Soil	MSMNDPSRAAAVPWAARGPVFSRPGLARPVAWAAPDDLDRQRASQARGALGKPLVPASVASPRLGDELF
Ga0210391_111510521	3300021433	Soil	MNELSRTAAAPWAARGPVFSQPGLARPVAWATPHDLDRLRASHARGQLGKPLVPTSVASPRLGDELFARLLTYGRQQ
Ga0210390_108924441	3300021474	Soil	VAAMNELSRAAAAPWAARGPVFSRPGLARPVAWDTPHDLDRLRASHARGQLGKPLVPTSVASPR
Ga0210398_115584501	3300021477	Soil	VIAMNELSRTAVPWAARGPVFSQPGLARPVAWATPHDLDRLRGSHARGQLGKPLVPASVASPRLGDELFAR
Ga0210402_102331153	3300021478	Soil	VTSMNELSRTAAAPWAARGPVFSQPGLARPVAWATPHDLDRLRASHARGQLGKPLVPTSVASPRLGDELF
Ga0208194_10678551	3300025412	Peatland	MDELSRAVAAPWAARGSMFSQPGLARPVAWAAPNDLDRLRASHARGQLGKPLVPANVASPRLG
Ga0207692_100641621	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VTAMDERSRADAPPWAGRGSVFSQAGLAPPVDWATPHDLDRLRASHGRRRLGRPLVPTSVSSPRLDDELFAR
Ga0207692_101525802	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VTAMKKLSRTDAVPWASRGPMFSQAGLARPVDWSTPDDLDRLRASHARGRLGKPLVPTSVASPRLGDELFARL
Ga0207692_102985901	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VTAMDERSRASAAPWGARGSVFSQAGLARPVAWDTPHDLDRLRASHPRRRPGRPLVPTSVASPRLGDELFA
Ga0207642_101981492	3300025899	Miscanthus Rhizosphere	MNKLSRADAAPWAARGSMFSQAGLARPVDWATPRDLDRLRASHARGRPDRPLVPTSVASPRLGDELFARLLA
Ga0207685_101099582	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	VTAMDERSRADAPPWAGRGSVFSQAGLAPPVDWATPHDLDRLRASHGRRRLGRPLVPTSVSSPRLDDELFARLLS
Ga0207699_106482211	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VTAMNEQSRADAAPWTARGSMFSQPGLARPVAWATPHDLDRLRASHARGRLGKPLVPTNVASPRLGNELF
Ga0207663_105912962	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MNKLSRADAAPWAARGSMFSQAGLARPVDWATATPRDLDRLRASHARGRPDRPLVPTSVASPRLGDELFARLLA
Ga0207663_107649481	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VTSMNDLSRAAAAPWAARGPVFSRPGLARPVAGAAPDDLDRLRARQARGELGKPLVPASVASPRLG
Ga0207662_111160061	3300025918	Switchgrass Rhizosphere	MNELSRADAAPSAARGSMFSQPGLARPVAWATPHDLDRLRASHARGRLGKPLVPTNVASPRLGNELFAR
Ga0207700_117670401	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VTAMNELPRAAVAPWARRGSMFSQAGLARPVDWASPRDLDRLRASRARERLDRPLVPTSVASPRLGDELFARLLAY
Ga0207664_100639191	3300025929	Agricultural Soil	MNELSRTAAPWAARGPVFSQPGLARPVAWATPQDLDRMRARPARGQRGKPVVPTSVSSPRLGDELFARLLAYGTPHETH
Ga0207665_110687031	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MNKLSRADAAPWAARGSMFSQAGLARPVDWATATPRDLDRLRASHARGRPDRPLVPTSVASPRLG
Ga0207648_117498381	3300026089	Miscanthus Rhizosphere	VTAMNKLSRADAAPWAARGSMFSQAGLARPVDWATPRDLDRLRASHARGRPGKPLVPTSVAS
Ga0209473_12611091	3300026330	Soil	VTAMNELSRADAAPRAARGSMFSQPGLARPVAWATPHDLDRLRASHARGRLGKPLVPTSVASPRLGDELFARLLAYGTP
Ga0209529_10558852	3300027334	Forest Soil	VIAMNELSRTAVPWAPRGPAFSQPGLTRPVAWATPHDLDRLRASHARGRPDKPLVPVSVA
Ga0209529_10859732	3300027334	Forest Soil	VTAMDELSPAAAAPWAARGSMFSQPGLARPVAGATPRDLDRLRASHARGRPGRPLVPTSVASPRLGDE
Ga0209330_10983281	3300027619	Forest Soil	VTAMNEPPRPVGPPWAQRGSMFSQAGLARPVDWASPQDLGRLRARHARERPGKPLVPTSVASPRLG
Ga0209178_10140902	3300027725	Agricultural Soil	MNDLSRAAAAPWAARGPVFSRPGLARPVAGAAPDDLDRLRARQARGELGKPLVPAS
Ga0209773_100267574	3300027829	Bog Forest Soil	MNELSRTAAAPWAARSPVFSQPGLARPVAGATPHDLDRLRASHAGGQLGKPLVPTSVASPRLGDELFARL
Ga0209773_101444042	3300027829	Bog Forest Soil	VAAMNELSRTAAAPWAARGPMFSQPGLARPVDWATPHDLDRLRASRGRGQLGKPLVPTSVASPRLGDELFARLLTYG
Ga0209180_106064881	3300027846	Vadose Zone Soil	VTAMDELSPATAAPWAARGSMFSQPGLARPVAWATPRDLDRLRASHARGRLGKPLVPTSVASPRLGDELFARLLAYGTP
Ga0209693_103246411	3300027855	Soil	VAAMNEPSRAADAPWAARGSMFSQAGLARPVTWATPQDLDRLRASRGRGRLGEPLVPTSVASP
Ga0209167_101626701	3300027867	Surface Soil	VITVKDLSRTAAAPWAARGPMFSQAGLARPVAWATPRDLDRLRASHPRGRLDKPLVPVSVASPRLGDE
Ga0209169_100068131	3300027879	Soil	VTAMNEPSRAVSPPWAARGSMFSQPGLARPVAGATPQDLDRLRASHARARPGKQLVPTSVASPRLGDDLFARLLSYGTHQ
Ga0209006_100645101	3300027908	Forest Soil	MEELSRTAAAPWAARGPRFSQPGLAKPVAWATPRDLDQLRASHARGRLAKPLVPTSVSS
Ga0209583_100992351	3300027910	Watersheds	MDELSPATAAPWAARGSMFSQPGLARPVAWAAPHDLDRLRASHARGRLGEPLVPAS
Ga0302220_101339021	3300028742	Palsa	VTAMDELSRAAGAPWAARGSMFSQPGLARPVAWATAHDLDRLRASHARGRLGKPLVPTSVASPRLGDELF
Ga0302232_106322441	3300028789	Palsa	VAAMNELSRAAGAPWAARGAMFSQPGLARPVAWATPHDLDRLRASRGRGRLGEPLVPTSVASPRLGDELFARL
Ga0302221_101397414	3300028806	Palsa	VIAMNELSRTAVPWAPRGPAFSQPGLARPVAWATPHDLDRLRASHARGKPDKPLVPTSVASPRLGDELFARL
Ga0302228_103153161	3300028808	Palsa	VTSMNELSRTAAPWAARGSMFSQPGLARPVAGATPHDLDRLRARHARGQLGEPLVPTSVA
Ga0308309_109796902	3300028906	Soil	MDERSRAGAAPWAAGGSVFSQAGLARPVDWATPDDLDRLRASHPRRRPGTPLVPTSVASPRLGDELFARLLSYGTPQ
Ga0308309_116464372	3300028906	Soil	VTSMNELSRTAAAPWAADGPMFSQPGLARPVAGATPHDLDRLRASHRRGQLGKPLVPTSVASPRLSDELF
Ga0311340_103030311	3300029943	Palsa	VTAMDELPRAAAAPWAARGPVFSQPGLARPVAWATPHDLDRLRGSHARGRLGKPLVPSGVASPRLGDELFARLLTYGTPH
Ga0311352_108400741	3300029944	Palsa	VSAMDELSRADAAPWAERGSMFSQPGLAGPVTWATPQDLDRLRARHAPRRLGKPLVPTGV
Ga0311339_100609545	3300029999	Palsa	MDELSRAVAAPWAARGSMFSQPGRARPVAWATPHDLDRQRASHTHGQLGEPLVPTGVASPRLGD
Ga0311339_101822501	3300029999	Palsa	VSAMDELSRADAAPWAARGSTFSQPGLAGPVAWATPQDLDRLRARHAPGRLGKPLVPTGVASP
Ga0311339_102997972	3300029999	Palsa	VTSMDELSRAVAAPWAARGSVFSRPGLARPVAWATPHDLDRLRASHARGRLGEPLVPTSVASPRLGDELAVNSESAAAAVRSW
Ga0302178_101019191	3300030013	Palsa	VSAMDELSRADAAPWAARGSTFSQPGLAGPVAWATPQDLDRLRARHAPGRLGKPLVPTCVASPRLGNEVFARLLAYGTPQ
Ga0302178_103348762	3300030013	Palsa	VAAMDELSRGAGAPWAARGPMFSQAGLARPVAWATPHDLDRLRASHARGRPGEPLVPTSVASPRLSDELFARLLT
Ga0302306_102085811	3300030043	Palsa	MDELSRAAGAPWAARGSMFSQPGLARPVAWATAHDLDRLRASHARGRLGKPLVPTSVASPRL
Ga0302182_103755172	3300030054	Palsa	VTSMNELSRTAAPWAARGSMFSQPGLARPVAGATPHDLDRLRARHARGQLGEPLVPTSVASPRLGDELF
Ga0302181_104647191	3300030056	Palsa	VSAMDELSRADAAPWAARGSTFSQPGLAGPVAWATPQDLDRLRARHAPGRLGKPLVPTGVASPRLGNEVFARLLAY
Ga0310037_101881211	3300030494	Peatlands Soil	VTSMNELSRTAAAPWAADGPMFSQPGLARPVAWATPHDLDRLRASHRRGQLGKPLVPTSVASPRLSDELFARLMTYGAPH
Ga0311372_118395261	3300030520	Palsa	VTAMDELSRAVAAPWAARGSMFSQPGLARPVAWATPHDLDRQRASHTHGQLGEPLVP
Ga0311356_103512504	3300030617	Palsa	VTAMDELPRAAAAPWAARGPVFSQPGLARPVAWATPHDLDRLRGSHARGRLGKPLVPSGVASP
Ga0265461_107035612	3300030743	Soil	VTAMNELSRTAAAPWAARGPMFSQPGLARPVAWAAPHDLDRLRAGHARGRLGEPLVPTSVASPRLSDE
Ga0265753_10104331	3300030862	Soil	VTSMNELSRTAAAPWAARGPVFSQPGLARPVAWATPDDLDRLRASQAGGQPGKPLVPVSVASP
Ga0302324_1028546452	3300031236	Palsa	MDELSRADAAPWAARGSMFSQPGLAGPVAWATPQDLDRLRARHAPGRQGKPLAPAGVASPRLSDELF
Ga0302324_1035430061	3300031236	Palsa	VAAMDELSRADAAPWAAHGSMFSQPGLATPVAWTTPHDLDRLRARHARGRLGKPLVPTSVASPRLGDELFARLLAYG
Ga0302326_103123133	3300031525	Palsa	MDELSRAVAAPWAARGSVFSRPGLARPVAWATPHDLDRLRASHARGRLGEPLVPTSVASPRLGDELAVNSESAAAVVRSW
Ga0302326_119848541	3300031525	Palsa	VSAMDELSRADAAPWAARGSMFSQPGLAGPVAWATPQDLDRLRARHAPGRLGKPLVPTGVASP
Ga0318573_107783122	3300031564	Soil	MDELSRAATAPWAERGPVFSQPGLARPVAWTAPHDLDRLRAGHGRGRLGKPLVPTSVASPRLGDELFARLLT
Ga0310915_109937381	3300031573	Soil	MDELSRAATAPWAEHGPVFSQPGLARPVAWTAPHDLDRLRAGHGRGRLGKPLVPTS
Ga0310686_1088506992	3300031708	Soil	VIAMNKLSRTAAAPWAARGPAFSQPGLARPVAWATPDDLDRLRASHGRGQLHKPLVPTSVASPRLGDELFARLLT
Ga0318496_102448231	3300031713	Soil	MDELSRAATAPWAERGPVFSQPGLARPVAWTAPHDLDRLRAGHGRGRLGKPLVPTSVASPRLGDELFARLLTYG
Ga0307476_102261042	3300031715	Hardwood Forest Soil	MNELSRADAAPWAARGSMFSQPGLARPVVWDTPHDLDRLRASHARGRLGKPLVPTSVASPRLGDELFARLLAYGT
Ga0307476_102946861	3300031715	Hardwood Forest Soil	VIAMNELSRTAVPWAARGPVFSQPGLARPAAWATPHDLDRLRGSHARGQLGKPLVPASVASPRLGDELFA
Ga0318493_105197901	3300031723	Soil	MDELSRAATAPWAERGPVFSQPGLARPVAWTAPHDLDRLRAGHGRGRLGKPLVPTSVASPRLGDELFARLL
Ga0318576_102167122	3300031796	Soil	MDEPSPAANAPWAARGPVFSQPGLARPVAWTKPHDLERLRASHGRGRLGKPLVPISVASPRLADELFARLLTYGTPHQ
Ga0307478_103445331	3300031823	Hardwood Forest Soil	MNELSRTAAAPWAARGSLFSQPGLARPVAWATPHELDRLRARHARGQLGKPLVPVSVA
Ga0307478_114281161	3300031823	Hardwood Forest Soil	VTAMDRRSRAEAGPWAARGAMFSQAGLARPVPWATPRDLDRLRASHARGGRPGKPLVPTSVASPRL
Ga0310909_108069472	3300031947	Soil	MDEPSRAATAPWAARGAMFSQAGLARPVAQASPQDLNRLRARHPRGRLGRPLVPVSEASPRLGDELFA
Ga0306926_126444712	3300031954	Soil	MDEPSRAATAPWAARGAMFSQAGLARPVAWASPQDLNRLRARHRRGRLGRPLVPVSEASPRLGDE
Ga0307479_116184273	3300031962	Hardwood Forest Soil	VTAMDELSPATAAPWAARGSRFSQPGLARPVAGATPRDLDRLRASHARGRPGKPLVPTSVASPRLGDELFARLLAYG
Ga0318569_103740781	3300032010	Soil	MDELSRAAISPWAERGPVFSQPGLARPVAWTAPHDLDRLRAGHGRGRLGKPLVPTSVASPRLGDELFARLLTY
Ga0318507_102381672	3300032025	Soil	MDELSRAAISPWAERGPVFSQPGLARPVAWTAPHDLDRLRAGHGRGRLGKPLVPTSVASPRLGDELFARLLTYGT
Ga0307472_1026943461	3300032205	Hardwood Forest Soil	MNDLSRAAAAPWAARGPMFSRPGLARPVAWAAPHDLDRLRARQARGALGKPLVPASVASPRLGDELFARLL
Ga0335081_105812713	3300032892	Soil	VTAMDERSRAGAAPWAERGSVFSQAGLARPVAWATPHDLDRLRASHGRRRPGRPLVP
Ga0335074_113672492	3300032895	Soil	MNEPLRAGAAPWARRGSVFSQAGLARPVAATPHDLDQLRASHGRRRPGNPLVPTSVASPRLAHELFGRLLSYGTPQKI
Ga0335072_100912951	3300032898	Soil	VTSMNEKSRTAAAPWARRGPVFSQAGLARPVDWATPRDLDRLRARQARAQRGKPLVPTSVASPRLGDELYARL
Ga0335076_103360991	3300032955	Soil	VTSMNELSRATAAPWAGRGPAFSQPGLARPVAWAAPGDLDRLRASHARGQLGKPLVPTGVAS
Ga0335076_107956002	3300032955	Soil	MDKLSRAATAPWDERGPVFSQPGLARPVAWTAPHDLDRLRAGHGRGRLGKPLVPTSVASPRLGD
Ga0335077_102168541	3300033158	Soil	VTAMDKRSRAGAAPWAGRGSVFSQAGLAQPVAWATPHDLDRLRASHGRRRLGGPLVPTSVASPRLGDELFARLVSYGTP
Ga0335077_119991451	3300033158	Soil	VTAMNELSRTAAAPWAARGSAFSQPGLARPAAWAAPHDLDRLRASHARGRPGKPLVPTSVASPRLGD
Ga0310914_118993421	3300033289	Soil	MDELSRAATAPWAERGPVFSQAGLARPVAWTTPHDLDRLRAGHGRGRLGKPLVPTSVASPRLGDELFARLLTYGTPYQTH
Ga0370483_0047150_485_727	3300034124	Untreated Peat Soil	MDELSRAVAAPWAARGSVFSRPGLARPVAWATPHDLDRLRASHARGRLGEPLVPTSVASPRLGDELAVNSESAAAAVRSW
Ga0370514_033097_238_432	3300034199	Untreated Peat Soil	MDELSRAAAAPWAARGSMFSQPGLARPVAWATAHDLDRLRASHARGRLGKPLVPTGVASPRLGD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F033547

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences