NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F032427

Metagenome / Metatranscriptome Family F032427

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F032427
Family Type Metagenome / Metatranscriptome
Number of Sequences 180
Average Sequence Length 41 residues
Representative Sequence VESIVFIVVLLVGIFAFDLGRRWWRENEWRRRWRERDDD
Number of Associated Samples 147
Number of Associated Scaffolds 180

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 31.46 %
% of genes near scaffold ends (potentially truncated) 26.11 %
% of genes from short scaffolds (< 2000 bps) 88.89 %
Associated GOLD sequencing projects 129
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (72.778 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(6.667 % of family members)
Environment Ontology (ENVO) Unclassified
(40.556 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(46.667 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60
1FWIRElOz_00562020
2E41_02829580
3L01_08207740
4F48_02557420
5deepsgr_02487920
6C688J18823_100470133
7C688J18823_105345251
8C688J35102_1186284322
9C688J35102_1188641251
10soilL1_100985994
11Ga0063454_1001351614
12Ga0063454_1006720402
13Ga0063455_1008256882
14Ga0062590_1007479762
15Ga0063356_1003055241
16Ga0062595_1020394821
17Ga0062592_1004925152
18Ga0066819_10249641
19Ga0066810_101846912
20Ga0065705_103625532
21Ga0065707_102793941
22Ga0070690_1008469651
23Ga0068869_1002429312
24Ga0068869_1008565952
25Ga0070666_108153471
26Ga0068868_1007412432
27Ga0070689_1005426342
28Ga0070661_1012054742
29Ga0070673_1024155932
30Ga0070701_100043455
31Ga0070701_106499263
32Ga0070705_1001741723
33Ga0070694_1013873562
34Ga0070678_1004860163
35Ga0070662_1001825563
36Ga0073909_100815274
37Ga0070679_1012397472
38Ga0068854_1009402542
39Ga0068859_1008542432
40Ga0066905_1012195562
41Ga0066905_1013088401
42Ga0068866_102384221
43Ga0066903_1024313132
44Ga0068858_1006279201
45Ga0068858_1019730582
46Ga0068862_1023232191
47Ga0066791_100060784
48Ga0066789_102992821
49Ga0075023_1001126773
50Ga0075026_1010662421
51Ga0075018_103691571
52Ga0097621_1002497132
53Ga0097621_1015027042
54Ga0068871_1015773983
55Ga0068871_1016268653
56Ga0074051_111825401
57Ga0074050_118012771
58Ga0074059_119828001
59Ga0074062_117135881
60Ga0075433_103357771
61Ga0068865_1004570813
62Ga0074063_128557832
63Ga0066793_100389402
64Ga0066793_101712182
65Ga0105240_115691031
66Ga0066709_1041977961
67Ga0105243_122911352
68Ga0105243_130347742
69Ga0075423_123914571
70Ga0105248_101896812
71Ga0105248_115979172
72Ga0105248_121240621
73Ga0105248_129114602
74Ga0105858_12929342
75Ga0105856_10263484
76Ga0105856_13583121
77Ga0126377_134238632
78Ga0134127_102370082
79Ga0134127_104929072
80Ga0134122_100266703
81Ga0134122_110191823
82Ga0134122_120527512
83Ga0134121_128618612
84Ga0134121_129053951
85Ga0134123_101276072
86Ga0126361_109959611
87Ga0137442_11054143
88Ga0137462_11711302
89Ga0150985_1129055061
90Ga0150985_1187211343
91Ga0150985_1189524771
92Ga0150984_1023641671
93Ga0150984_1076619733
94Ga0150984_1163349421
95Ga0137397_108687222
96Ga0157310_100867812
97Ga0137396_101185921
98Ga0137413_109340412
99Ga0137416_106807332
100Ga0137404_120260471
101Ga0137410_104938823
102Ga0137410_111065532
103Ga0164298_111683101
104Ga0164309_110475872
105Ga0157378_131973732
106Ga0163162_109288853
107Ga0163163_100807086
108Ga0157376_107084273
109Ga0167653_10354591
110Ga0167647_10493352
111Ga0137412_110968732
112Ga0163161_108089433
113Ga0184620_100391222
114Ga0184623_102448321
115Ga0190270_111707072
116Ga0190274_103533011
117Ga0173479_100872582
118Ga0193692_10127203
119Ga0210403_104457132
120Ga0210382_103612842
121Ga0194060_100057036
122Ga0213853_102885744
123Ga0222622_100226723
124Ga0222622_102290702
125Ga0207642_102549611
126Ga0207680_104073691
127Ga0207645_106068651
128Ga0207643_105834772
129Ga0207695_112274951
130Ga0207660_105535271
131Ga0207652_110586672
132Ga0207659_106239321
133Ga0207691_101517031
134Ga0207711_101277872
135Ga0207711_101922784
136Ga0207711_118371172
137Ga0207689_108304303
138Ga0207661_108745451
139Ga0207661_121073462
140Ga0207640_117133381
141Ga0207658_109533242
142Ga0207677_107394191
143Ga0209848_10475671
144Ga0209848_10921433
145Ga0209847_10151924
146Ga0209811_100515042
147Ga0209624_110511691
148Ga0209415_106229282
149Ga0207428_100343284
150Ga0209382_100255766
151Ga0209583_103053251
152Ga0209698_111547351
153Ga0209168_102182502
154Ga0268265_115693832
155Ga0268264_101747734
156Ga0268264_111832173
157Ga0268264_115904612
158Ga0268264_120714622
159Ga0307280_101899171
160Ga0307282_103563052
161Ga0307305_105725801
162Ga0307310_106629572
163Ga0311338_115840462
164Ga0170834_1030709541
165Ga0307495_102439892
166Ga0170824_1096862122
167Ga0265330_102414132
168Ga0170820_131184192
169Ga0318501_103394301
170Ga0318552_104621653
171Ga0318529_101358394
172Ga0310907_108286871
173Ga0306919_107626903
174Ga0315278_121982822
175Ga0310906_104318563
176Ga0315281_100104424
177Ga0315281_101233573
178Ga0315268_125803831
179Ga0307472_1025476322
180Ga0372943_0054392_783_902
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 53.73%    β-sheet: 0.00%    Coil/Unstructured: 46.27%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

5101520253035VESIVFIVVLLVGIFAFDLGRRWWRENEWRRRWRERDDDExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
72.8%27.2%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Groundwater Sediment
Watersheds
Anoxic Zone Freshwater
Sediment
Soil
Groundwater Sediment
Watersheds
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Glacier Forefield Soil
Surface Soil
Peatlands Soil
Switchgrass Rhizosphere
Soil
Sugarcane Root And Bulk Soil
Grasslands Soil
Grass Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Permafrost Soil
Soil
Prmafrost Soil
Soil
Tropical Forest Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Palsa
Avena Fatua Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Avena Fatua Rhizosphere
Boreal Forest Soil
2.8%6.7%5.0%4.4%4.4%2.8%3.3%3.9%2.8%5.0%5.0%3.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FWIRElOz_005620202124908007SoilVLTVIFIVVLIAGIFIADIAGRWWRENEWRRRWKDRADDD
E41_028295802170459005Grass SoilVESIVFIVLLLVGIFAFDLGKRWWRENEWQRRWRERDDD
L01_082077402170459006Grass SoilLVFLVGATVFIVVLLVGIFAVDLGRRWWRENEWQRRWRRRDDDD
F48_025574202170459008Grass SoilVLTVIFIVVLIVGIFIADIAGRWWRENEWRRRWKDRADDD
deepsgr_024879202199352025SoilLLFLVGATVFIVVLLVGIFAVDLGRRWWRENEWQRRWRRRDEDD
C688J18823_1004701333300001686SoilVEATVFIVILIVGIFVFDLGRRWWLENEWQRRWKERDEE*
C688J18823_1053452513300001686SoilVEATVFIVILIVGIFVFDLARRWWLENEWQRRWKERDEE*
C688J35102_11862843223300002568SoilTGPPLFWSGLVESTFFIVSLIACIFAFDLGKRWWRENEWRRRWRQRDDD*
C688J35102_11886412513300002568SoilLADLVESTVFIVVLLVGIFAFDLWRRWWRENEWRRRWREREDD*
soilL1_1009859943300003267Sugarcane Root And Bulk SoilVGAAIFIAALILVIFAVDIGSRWWRENEWRRRWRERERGDE*
Ga0063454_10013516143300004081SoilVEATVFIILLIVGIFIFDLGRRWWLENEWQRRWKERDED*
Ga0063454_10067204023300004081SoilLIPRVEATVFIVILIVGIFVFDLARRWWLENEWQRRWKERDE
Ga0063455_10082568823300004153SoilVESTFFIVLLIACIFAFDLGKRWWRENEWRRRWRQRDDD*
Ga0062590_10074797623300004157SoilVEAALFIVVLIFVIFAVDIGSRWWRENEWRRRWRERQRDDD*
Ga0063356_10030552413300004463Arabidopsis Thaliana RhizosphereVEAALFIAALIFVIFAVDIIGRWWRENEWRRRWRERERDDE*
Ga0062595_10203948213300004479SoilVESIVFIVVLLVGIFAFDLGKRWWRENEWQRRWRERDED*
Ga0062592_10049251523300004480SoilVEAVLFIIALLFIIFAVDLGGRWWRENEWRRRWRERDDE*
Ga0066819_102496413300005148SoilLVFLVEATVFIVVLLVGIFVVDLGRRWWRENEWQRRWRRRDEDD*
Ga0066810_1018469123300005169SoilLLVESIVFIVVLVVGIFVFDLGWRWWRENEWQRRWRDRDDDD*
Ga0065705_1036255323300005294Switchgrass RhizosphereVEAGIFIAALIVVIFAVDIIGRWWRENEWRRRWRERERERDDR*
Ga0065707_1027939413300005295Switchgrass RhizosphereVEATVFIVALLFVIFAVELIGRWWRQNEWRRRWRERDDE*
Ga0070690_10084696513300005330Switchgrass RhizosphereLLRLVESIVFIVVLIVGIFAVDLGRRWWRENEWQRRWRERDDD*
Ga0068869_10024293123300005334Miscanthus RhizosphereLIVLRASTILAWLVESIVFIVALLVGIFAFDLVRRWWRENEWQRRWRERDDD*
Ga0068869_10085659523300005334Miscanthus RhizosphereVEAVVFIVALLVVNFAVDLVGRWWRENEWRRRWRERERDDD*
Ga0070666_1081534713300005335Switchgrass RhizosphereVEATVFIVVLLVAIFAVDLGRRWWRENEWQRRWRQRDEE*
Ga0068868_10074124323300005338Miscanthus RhizosphereLRSLVEATIFIVVLVVGIFAVDLGRRWWRENEWQRRWRQRGEDESGD*
Ga0070689_10054263423300005340Switchgrass RhizosphereVESAIFIAALIFVIFAVDIVGRWWRENEWRRRWRERERERDDQ*
Ga0070661_10120547423300005344Corn RhizosphereLLRLVESIVFIVVLIVGIFVVDLGRRWWRENEWQRRWRERDDD*
Ga0070673_10241559323300005364Switchgrass RhizosphereVPVEAIVFIILLLAAIFAFDIGRRWWRENEWQRRWRERDEE*
Ga0070701_1000434553300005438Corn, Switchgrass And Miscanthus RhizosphereVGAAIFIAALILVIFAVDIGNRWWRENEWRRRWRERERNDE*
Ga0070701_1064992633300005438Corn, Switchgrass And Miscanthus RhizosphereVEAGLFIAALIFVIFAVDLIGRWWRENEWRRRWRGRERDRDDR*
Ga0070705_10017417233300005440Corn, Switchgrass And Miscanthus RhizosphereVEAVVFIVGLLFVIFVVDLVGRWWRENEWRRRWRERDDD*
Ga0070694_10138735623300005444Corn, Switchgrass And Miscanthus RhizosphereVGAAIFIAALILAIFVVDIGSRWWRENEWRRRWRERERDEE
Ga0070678_10048601633300005456Miscanthus RhizosphereLDFPVEAIAFIVVLIVGIFAFDLGKRWWRENEWQRRWRERDDD*
Ga0070662_10018255633300005457Corn RhizosphereVEAVLFIVTLLFIIFAVDLGGRWWRENEWRRRWRERDDE*
Ga0073909_1008152743300005526Surface SoilVESIVFIVVLVVGIFVFDLGRRWWRENEWQRRWRDRDDE*
Ga0070679_10123974723300005530Corn RhizosphereVESIFFIVVLIVGIFAVDLGKRWWRENEWRRRWRERDED*
Ga0068854_10094025423300005578Corn RhizosphereVESIVFIVLLLVGIFAFDIGKRWWRENEWQRRWRERDEE*
Ga0068859_10085424323300005617Switchgrass RhizosphereVEAAVFIGALLFVIFAVDLVGRWWRENEWRRRWRERERDDD*
Ga0066905_10121955623300005713Tropical Forest SoilVSALVFIVAMIIVVFVVDIGKRWWLENEWRRRWRRTETDDD*
Ga0066905_10130884013300005713Tropical Forest SoilFIVVLVVGIFVFDFASRWWRENEWQRRWKRKNEED*
Ga0068866_1023842213300005718Miscanthus RhizosphereLFLDFPVEAIAFIVVLIVGIFAFDLGKRWWRENEWQRRWRERDDD*
Ga0066903_10243131323300005764Tropical Forest SoilLAFLVATVFIVVLVVGIFVYDFARRWWRENEWQRRWRRREDDE*
Ga0068858_10062792013300005842Switchgrass RhizospherePGTPLFLLRLVESIVFIVVLIVGIFVVDLGRRWWRENEWQRRWRERDDD*
Ga0068858_10197305823300005842Switchgrass RhizosphereLGFPVEATVFIVVLLVAIFAVDLGRRWWRENEWQRRWRERDED*
Ga0068862_10232321913300005844Switchgrass RhizosphereVHYAFRGLVEAVVFIVGLLFVIFVVDLVGRWWRENEWRRRWRERDDD*
Ga0066791_1000607843300005949SoilVESILFIIVLLVGIFVFDLGRRWWQQNEWQRRWREKDDD*
Ga0066789_1029928213300005994SoilLLVESILFIIVLLVGIFVFDLGRRWWQQNEWQRRWREKDDD*
Ga0075023_10011267733300006041WatershedsVESTVFIIVLLVGIFVVDLGRRWWRENEWRRRWRERDED*
Ga0075026_10106624213300006057WatershedsVESTLFIIVLLVGIFAFDLGKRWWRENEWQRRWRERDDDD*
Ga0075018_1036915713300006172WatershedsVLIARRTSTILADLVESIVFIVVLLVGIFAFDLGRRWWRENEWRRRWRERDDD*
Ga0097621_10024971323300006237Miscanthus RhizosphereVEAAVFIGALLFVIFAVDLVGRWWRENEWRRRWRERDDD*
Ga0097621_10150270423300006237Miscanthus RhizosphereLGFPVEATVFIVVLLVAIFAVDLGRRWWRENEWQRRWR
Ga0068871_10157739833300006358Miscanthus RhizosphereILAWLVESIVFIVALLVGIFAFDLVRRWWRENEWQRRWRERDDD*
Ga0068871_10162686533300006358Miscanthus RhizosphereLFLVFLVEATVFIVVLLVGIFVVDLGRRWWRENEWQRRWRRRDEDD*
Ga0074051_1118254013300006572SoilLVFLVEATVFIVVLLVGIFVVDLGRRWWRENEWQRRWRE
Ga0074050_1180127713300006577SoilLVFLVEATVFIVVLLVGIFVVDLGRRWWRENEWQRRWRERDDDD*
Ga0074059_1198280013300006578SoilLVESIVFIVVLVVGIFVFDLGWRWWRENEWQRRWRDRDDDD*
Ga0074062_1171358813300006606SoilLVFLVEATVFIVVLLVGIFVVDLGRRWWRENEWQRRWRRRD
Ga0075433_1033577713300006852Populus RhizosphereVGAAIFIAALILVIFVVDIGSRWWRENEWRRRWRERERDEE*
Ga0068865_10045708133300006881Miscanthus RhizosphereVFIVVLLVAIFAVDLGRRWWRENEWQRRWRERDED*
Ga0074063_1285578323300006953SoilLKFSVGATAFIIVLLIGIFVVDLGRRWWRENEWQRRWRERDDDD*
Ga0066793_1003894023300009029Prmafrost SoilVTSIVFIVVLIVGIFIADIVGRWWRENEWRRRWRDRRDDDD*
Ga0066793_1017121823300009029Prmafrost SoilVASILFIIVLIVGIFVVDLGRRWWRENEWQRRWRKRDED*
Ga0105240_1156910313300009093Corn RhizosphereVNAIVFIVLLLIGIFVVDIGKRWWRENEWQRRWRERDDD*
Ga0066709_10419779613300009137Grasslands SoilLIPRVEATVFIVLLIVGIFVFDLARRWWLENEWQRR
Ga0105243_1229113523300009148Miscanthus RhizosphereVEAVVFIVALLVVIFAVDLVGRWWRENEWRRRWRERDDD*
Ga0105243_1303477423300009148Miscanthus RhizosphereLAFPVATVFIVVLVVGIFVFDFARRWWRENEWQRRWR
Ga0075423_1239145713300009162Populus RhizosphereVGAAIFIAALILVIFVVDIGSRWWRENEWRRRWRERERERDDR*
Ga0105248_1018968123300009177Switchgrass RhizosphereVEATVFIVVLLVAIFAVDLGRRWWRENEWQRRWRERDED*
Ga0105248_1159791723300009177Switchgrass RhizosphereVESIVFIVVLIVGIFAVDLGRRWWRENEWQRRWRERDDD*
Ga0105248_1212406213300009177Switchgrass RhizosphereYAFRVLVEAAVFIGALLFVIFAVDLVGRWWRENEWRRRWRERDDD*
Ga0105248_1291146023300009177Switchgrass RhizosphereVESIVFIVALLVGIFAFDLVRRWWRENEWQRRWRERDDD*
Ga0105858_129293423300009661Permafrost SoilVLTVIFIVVLIVGIFAADIAGRWWRENEWRRRWKDRADDD*
Ga0105856_102634843300009662Permafrost SoilLISFSLLVESILFIIVLLVGIFVFDLGRRWWQQNEWQRRWREKDDD*
Ga0105856_135831213300009662Permafrost SoilTAALLSFLKLVEATLFIGVVIIGIFVFDLGKRWWRENEYKRRWRERDDD*
Ga0126377_1342386323300010362Tropical Forest SoilLVSPVATVFIVVLVVGIFVFDFASRWWRENEWQRRWKRKNEED*
Ga0134127_1023700823300010399Terrestrial SoilVESAIFIAALIFVIFAVDIIGRWWRENEWRRRWRERERERDDR*
Ga0134127_1049290723300010399Terrestrial SoilVEAVLFIIALLVVIFAVDLGGRWWRENEWRRRWRERDDE*
Ga0134122_1002667033300010400Terrestrial SoilVEAAVFIVALLLVIFAVELIGRWWRQNAWRRRWRERECDDE*
Ga0134122_1101918233300010400Terrestrial SoilAIGVLLVGIFAFDLGKRWWRENEWQRRWRERDDD*
Ga0134122_1205275123300010400Terrestrial SoilVEAALFIVVLIVVIFAVDIGSRWWRENEWRRRWRERQRDDD*
Ga0134121_1286186123300010401Terrestrial SoilVEAVVFIVALLLIIFAVDLGGRWWRENEWRRRWRERERDDD*
Ga0134121_1290539513300010401Terrestrial SoilVVFIVALLLIIFAVDLGGRWWRENEWRRRWRERERDDE*
Ga0134123_1012760723300010403Terrestrial SoilVESAIFIAALIFVIFAVDIIGRWWRENEWRRRWRERERERDDQ*
Ga0126361_1099596113300010876Boreal Forest SoilVESIVFIVVLLVGIFAFDLGRRWWRENEWQRRWRERDED*
Ga0137442_110541433300011414SoilLIVRRTSTILAFLVESIVFIVALLVGIFAVDLVRRWWRENEYKRRWRERDDD*
Ga0137462_117113023300011421SoilVEAVLFIVALLFIIFAVDLGGRWWRENEWRRRWRERDDE*
Ga0150985_11290550613300012212Avena Fatua RhizosphereAILFIVVMLVGIFAFDIGRRWWRENEWQRRWRERDKE*
Ga0150985_11872113433300012212Avena Fatua RhizosphereVEATVFIIVLVVGIFVVDLGRRWWLENEWQRRWRERDED*
Ga0150985_11895247713300012212Avena Fatua RhizosphereVGSIVFIVALLIGIFAFDIGRRWWRENEWQRRWRQRDEE*
Ga0150984_10236416713300012469Avena Fatua RhizosphereCVEATVFIIVLVVGIFVVDLGRRWWLENEWQRRWRERDED*
Ga0150984_10766197333300012469Avena Fatua RhizosphereVESLVFIVVLVIGIFAFDIGRRWWRENEWQRRWRQRDEE*
Ga0150984_11633494213300012469Avena Fatua RhizosphereTVFIVVLVVGIFVFDLVSRRWRENEWQRRWRRRDEDN*
Ga0137397_1086872223300012685Vadose Zone SoilVESIVFIVILVVGIFVFDLGRRWWRENEWQRRWRERDED*
Ga0157310_1008678123300012916SoilVEAVLFIVTLLFIIFAVDLSGRWWRENEWRRRWRERDDE*
Ga0137396_1011859213300012918Vadose Zone SoilAVLFIVVLIVAIFAYDLVRRWWRENEWKRRLRDRDH*
Ga0137413_1093404123300012924Vadose Zone SoilVESIVFIVVLLVGIFAFDLVRRWWRENEYKRRWRERDDD*
Ga0137416_1068073323300012927Vadose Zone SoilVESIVFIVALLVGIFAFDLGRRWWRENEWRRRWRERDED*
Ga0137404_1202604713300012929Vadose Zone SoilLQFPVAATVFILVLLVSIFAFDLGRRWWRENEWQRRWRRRDDE*
Ga0137410_1049388233300012944Vadose Zone SoilLDFPVEAIAFIVVLLVGIFAFDLGKRWWRENEWQRRWRQRDEE*
Ga0137410_1110655323300012944Vadose Zone SoilVLTVIFIVALIAGIFIADIAGRWWRENEWRRRWKDRSDDD*
Ga0164298_1116831013300012955SoilVAATVFIVVLIVGIFVFDLGRRWWLENEWQRRWKERDEE*
Ga0164309_1104758723300012984SoilLVFLVEATVFIVVLLVGIFVVDLGRRWWRENEWKRRWRRGKDDD*
Ga0157378_1319737323300013297Miscanthus RhizosphereLAFPVATVFIVVLVVGIFVFDFARRWWRENEWQRRWRHRNDDD*
Ga0163162_1092888533300013306Switchgrass RhizosphereGLPVEATVFIVVLLVAIFAFDLGRRWWRENEWQRRWRQRDED*
Ga0163163_1008070863300014325Switchgrass RhizosphereLRSLVEATVFIVVLVVGIFAVDLGRRWWRENEWQRRWRQRGEDESGD*
Ga0157376_1070842733300014969Miscanthus RhizosphereLVFLVEATVFIVVLLVGIFAVDLGRRWWRENEWQRRWRRRDEDD*
Ga0167653_103545913300015162Glacier Forefield SoilVEAAIFIGVMLLAIFAFDLGKRWWRENEWQRRWRERDEE*
Ga0167647_104933523300015199Glacier Forefield SoilVAAIVFIVVVLVGIFAFDLGMRWWRENEWRRRWRERDEE*
Ga0137412_1109687323300015242Vadose Zone SoilVGATVFIVVLIVGIFVVDFGRRKWRENEWQRRWRQRDDD*
Ga0163161_1080894333300017792Switchgrass RhizosphereVEAVVFIVALLLIIFAVDLGGRWWRENEWRRRWRERERDDE
Ga0184620_1003912223300018051Groundwater SedimentVEAAVFIVALLIVIFAVDLIGRWWRQNEWRRRWRERDDD
Ga0184623_1024483213300018056Groundwater SedimentVEAAVFIVALLIVIFAVDLIGRWWRQNEWRRRWREHDDE
Ga0190270_1117070723300018469SoilVEAAVFIVGLIFVIFVVDLVGRWWRENEWRRRWRERDDE
Ga0190274_1035330113300018476SoilVESAIFIAALIFVIFAVDIVGRWWRENEWRRRWRERERERDDQ
Ga0173479_1008725823300019362SoilVEAVLFIVTLLFIIFAVDLGGRWWRENEWRRRWRERDDE
Ga0193692_101272033300020000SoilVEATVFIVVLLVAIFAIDLGRRWWRENEWQRRWRQRDEE
Ga0210403_1044571323300020580SoilLGFPVEAIVFIVVLLVGIFAFDLGRRWWRENEWQRRWRQRDED
Ga0210382_1036128423300021080Groundwater SedimentVEAAVFIVGLLFVIFAVDLVGRWWRENEWRRRRWRQRDDE
Ga0194060_1000570363300021602Anoxic Zone FreshwaterVFAILVITVSIVGIFAFDIARRWWRETEWQRRWNQRDENDD
Ga0213853_1028857443300021861WatershedsMLVESIVFIVVLLVGIFAFDLGRRWWRENEWQRRWRERDDD
Ga0222622_1002267233300022756Groundwater SedimentVEAVVFIVALLFIIFAVDLGGRWWRENEWRRRWRERDDE
Ga0222622_1022907023300022756Groundwater SedimentVEATVFIVALLIVIFAVELVGRWWRQNEWRRRWRERDDD
Ga0207642_1025496113300025899Miscanthus RhizosphereLDFPVEAIAFIVVLIVGIFAFDLGKRWWRENEWQRRWRERDDD
Ga0207680_1040736913300025903Switchgrass RhizosphereDFPVEAIAFIVVLIVGIFAFDLGKRWWRENEWQRRWRERDDD
Ga0207645_1060686513300025907Miscanthus RhizosphereVEAALFIVVLIFVIFAVDIGSRWWRENEWRRRWRERQRDDD
Ga0207643_1058347723300025908Miscanthus RhizosphereVESAIFIAALIFVIFAVDIVGRWWRENEWRRRWRERERERDDR
Ga0207695_1122749513300025913Corn RhizosphereVNAIVFIVLLLIGIFVVDIGKRWWRENEWQRRWRERDD
Ga0207660_1055352713300025917Corn RhizosphereVEAVLFIVALLFIIFAVDLGGRWWRENEWRRRWRERDDE
Ga0207652_1105866723300025921Corn RhizosphereVESIFFIVVLIVGIFAVDLGKRWWRENEWRRRWRERDED
Ga0207659_1062393213300025926Miscanthus RhizosphereVESAIFIAALIFVIFAVDIIGRWWRENEWRRRWRERERERDDR
Ga0207691_1015170313300025940Miscanthus RhizosphereVEAGLFIAALIFVIFAVDLIGRWWRENEWRRRWRGRERDRDDR
Ga0207711_1012778723300025941Switchgrass RhizosphereVEATVFIVVLLVAIFAVDLGRRWWRENEWQRRWRERDED
Ga0207711_1019227843300025941Switchgrass RhizosphereHYAFRVLVEAAVFIGALLFVIFAVDLVGRWWRENEWRRRWRERERDDD
Ga0207711_1183711723300025941Switchgrass RhizosphereVESIIFIVLLVAGIFAFDLGRRWWRENEWRRRWRERDEG
Ga0207689_1083043033300025942Miscanthus RhizosphereTVFIVLLLAGIFIVDLGRRRWRENEWQRRWRDRDKEE
Ga0207661_1087454513300025944Corn RhizosphereVNAIVFIVLLLIGIFVVDIGKRWWRENEWQRRWRERDDD
Ga0207661_1210734623300025944Corn RhizosphereLAFPVATVFIVVLVVGIFVFDFARRWWRENEWQRR
Ga0207640_1171333813300025981Corn RhizosphereVEAAVFIGALLFVIFAVDLVGRWWRENEWRRRWRERDDD
Ga0207658_1095332423300025986Switchgrass RhizosphereLAFPVATVFIVVLVVGIFVFDFARRWWRENEWQRRWRHRNDD
Ga0207677_1073941913300026023Miscanthus RhizosphereLVESTVFIVLLLVGIFAFDIIKRWWRENEWQRRWRERDDE
Ga0209848_104756713300026221Permafrost SoilVESILFIIVLLVGIFVFDLGRRWWQQNEWQRRWREKDDD
Ga0209848_109214333300026221Permafrost SoilSILFIIVLLVGIFVFDLGRRWWQQNEWQRRWREKDDD
Ga0209847_101519243300026276Permafrost SoilFSLLVESILFIIVLLVGIFVFDLGRRWWQQNEWQRRWREKDDD
Ga0209811_1005150423300027821Surface SoilLVFLVEATVFIVVLLVGIFVVDLGRRWWRENEWQRRWRRRDEDD
Ga0209624_1105116913300027895Forest SoilFIVVLIAGIFIADIGGRWWRENEWRRRWKNRADDD
Ga0209415_1062292823300027905Peatlands SoilMSDVTFVVVLVVGIFVFDFIRRWWKENEWKRRWRDRDED
Ga0207428_1003432843300027907Populus RhizosphereVGAAIFIAALILVIFVVDIGSRWWRENEWRRRWRERERDEE
Ga0209382_1002557663300027909Populus RhizosphereVEAGLFIAALIFVIFAVDIIGRWWRENEWRRRWRERERERDDR
Ga0209583_1030532513300027910WatershedsVESTVFIIVLLVGIFVVDLGRRWWRENEWRRRWRERDED
Ga0209698_1115473513300027911WatershedsTTFIVLLIVAIFAFELGRRWWRENEWKRRWRDHEKDQD
Ga0209168_1021825023300027986Surface SoilVLSIVFIVVLVIGIFAVDIGGRWWRENEWRRRWRDT
Ga0268265_1156938323300028380Switchgrass RhizosphereVGAAIFIAALILVIFAVDIGNRWWRENEWRRRWRERERNDE
Ga0268264_1017477343300028381Switchgrass RhizosphereLAFPVATVFIVVLVVGIFVFDFARRWWRENEWQRRWRHRNDDD
Ga0268264_1118321733300028381Switchgrass RhizosphereLIVLRASTILAWLVESIVFIVALLVGIFAFDLVRRWWRENEWQRRWRERDDD
Ga0268264_1159046123300028381Switchgrass RhizosphereVAPEIVFVIVLLVAIFAFDLGRRWWRENEWQRRWRRRDEDD
Ga0268264_1207146223300028381Switchgrass RhizosphereVESIVFIVALLVGIFAFDLVRRWWRENEYKRRWRERERDDD
Ga0307280_1018991713300028768SoilVLVESIVFIIALLVGIFAVDLVRRWWRENEWQRRWRERDDD
Ga0307282_1035630523300028784SoilVEAAVFIVGLLFVIFAVDLVGRWWRENEWRRRRWRGRDDE
Ga0307305_1057258013300028807SoilAFRGLVEAAVFIVGLLFVIFAVDLVGRWWRENEWRRRRWRGRDDE
Ga0307310_1066295723300028824SoilLLVESIVFIVALLVGIFAFDLVRRWWRENEYKRRWRERERDDD
Ga0311338_1158404623300030007PalsaVLSIAFIVVLILGIFVADIGGRWWRENEWRRRWRDREDED
Ga0170834_10307095413300031057Forest SoilPVLSGCPDVHVLTVIFIVVLIAGIFIADIGGRWWRENEWRRRWKNRADDD
Ga0307495_1024398923300031199SoilLVFLVGATVFIVVLLVGIFVFDLGRRWWRENEWKRRWRRGKDDD
Ga0170824_10968621223300031231Forest SoilVESIVFIVVLLVGIFAFDLGRRWWRENEWRRRWRERDDD
Ga0265330_1024141323300031235RhizosphereMVIFIVVLIVGIFAFDFGHRWWRETEWKRRWKDRSLDD
Ga0170820_1311841923300031446Forest SoilVLTVIFIVVLIAGIFIADIGGRWWRENEWRRRWKNRADDD
Ga0318501_1033943013300031736SoilGWPCLFLIFPVATVFIVVLVVGIFVFDFASRWWRENEWQRRWRRRQDEE
Ga0318552_1046216533300031782SoilFLIFPVATVFIVVLVVGIFVFDFASRWWRENEWQRRWRRRQDEE
Ga0318529_1013583943300031792SoilPCLFLIFPVATVFIVVLVVGIFVFDFASRWWRENEWQRRWRRRQDEE
Ga0310907_1082868713300031847SoilPVESAIFIAALIFVIFAVDIVGRWWRENEWRRRWRERERERDDQ
Ga0306919_1076269033300031879SoilVATVFIVVLVVGIFVFDFASRWWRENEWQRRWRRRQDEE
Ga0315278_1219828223300031997SedimentVESTVFIVVLIAAIFVFDVGRRWWRQNEWRRRWLQRRDDD
Ga0310906_1043185633300032013SoilSAIFIAALIFVIFAVDIVGRWWRENEWRRRWRERERERDDQ
Ga0315281_1001044243300032163SedimentVTSIVFIVVLLVGIFVFDVGKRWWRENEWRRRWRARKRDDDD
Ga0315281_1012335733300032163SedimentVEAIVFIVVLVVGIFVFDVVRRWWRENEWRRRWHKRDED
Ga0315268_1258038313300032173SedimentVESTVFIVVLIAAIFVFDVGRRWWRENEWRRRWRQRRDDQ
Ga0307472_10254763223300032205Hardwood Forest SoilLAFPVATVFIVVLVVGIFVFDFVWRWWRENEWQRRWRRRDEEE
Ga0372943_0054392_783_9023300034268SoilVEATVFIVILIVGIFVFDLARRWWLENEWQRRWKERDDE


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.