Metagenome / Metatranscriptome Family F031915

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F031915
Family Type	Metagenome / Metatranscriptome
Number of Sequences	181
Average Sequence Length	42 residues
Representative Sequence	MKFMFTIYHDENVLDAMPEKEMQALVDSAIEYAEEIRRSGHY
Number of Associated Samples	149
Number of Associated Scaffolds	181

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.34 %
% of genes near scaffold ends (potentially truncated)	93.92 %
% of genes from short scaffolds (< 2000 bps)	94.48 %
Associated GOLD sequencing projects	144
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.475 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (10.497 % of family members)
Environment Ontology (ENVO)	Unclassified (23.204 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.541 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.57% β-sheet: 0.00% Coil/Unstructured: 61.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 181 Family Scaffolds
PF03795	YCII	27.62
PF02668	TauD	3.31
PF01575	MaoC_dehydratas	2.76
PF08281	Sigma70_r4_2	2.21
PF00903	Glyoxalase	1.66
PF00501	AMP-binding	1.10
PF07589	PEP-CTERM	1.10
PF07690	MFS_1	1.10
PF00378	ECH_1	0.55
PF02515	CoA_transf_3	0.55
PF13428	TPR_14	0.55
PF02728	Cu_amine_oxidN3	0.55
PF12681	Glyoxalase_2	0.55
PF09865	DUF2092	0.55
PF08240	ADH_N	0.55
PF07963	N_methyl	0.55
PF12867	DinB_2	0.55
PF04397	LytTR	0.55
PF00389	2-Hacid_dh	0.55
PF02826	2-Hacid_dh_C	0.55
PF06983	3-dmu-9_3-mt	0.55
PF04075	F420H2_quin_red	0.55
PF13592	HTH_33	0.55
PF00496	SBP_bac_5	0.55
PF13561	adh_short_C2	0.55
PF02627	CMD	0.55
PF13191	AAA_16	0.55
PF00106	adh_short	0.55
PF00072	Response_reg	0.55

COG ID	Name	Functional Category	% Frequency in 181 Family Scaffolds
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	27.62
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	3.31
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.55
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.55
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.55
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	0.55
COG3733	Cu2+-containing amine oxidase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.55
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	0.55

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.48 %
Unclassified	root	N/A	5.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.48 %
Unclassified	root	N/A	5.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.48 %
Unclassified	root	N/A	5.52 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	23.76 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	8.84 %
Unclassified	root	N/A	5.52 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.55 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.55 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	8.84 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6.08 %
Unclassified	root	N/A	5.52 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.76 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.55 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.55 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	8.84 %
Unclassified	root	N/A	5.52 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.66 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.55 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.55 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.55 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.55 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	8.84 %
Unclassified	root	N/A	5.52 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.66 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.55 %
Hahellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Hahellaceae	0.55 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.55 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	8.84 %
Unclassified	root	N/A	5.52 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.55 %
Variibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter	0.55 %
Hahella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Hahellaceae → Hahella	0.55 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.55 %
Frateuria	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Frateuria	0.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.55 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	8.84 %
Unclassified	root	N/A	5.52 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	0.55 %
unclassified Frateuria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Frateuria → unclassified Frateuria	0.55 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.55 %
Variibacter gotjawalensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	0.55 %
Hahella chejuensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Hahellaceae → Hahella → Hahella chejuensis	0.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.55 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	8.84 %
Unclassified	root	N/A	5.52 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.55 %
Frateuria sp. Soil773	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Frateuria → unclassified Frateuria → Frateuria sp. Soil773	0.55 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	0.55 %
Variibacter gotjawalensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	0.55 %
Hahella chejuensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Hahellaceae → Hahella → Hahella chejuensis	0.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.55 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	8.84 %
Unclassified	root	N/A	5.52 %
Pedosphaera parvula Ellin514	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	0.55 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.55 %
Frateuria sp. Soil773	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Frateuria → unclassified Frateuria → Frateuria sp. Soil773	0.55 %
Variibacter gotjawalensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	0.55 %
Hahella chejuensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Hahellaceae → Hahella → Hahella chejuensis	0.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.55 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_100594162	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300000891\|JGI10214J12806_10132458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Hahellaceae → Hahella → Hahella chejuensis	1072	Open in IMG/M
3300000955\|JGI1027J12803_107207372	All Organisms → cellular organisms → Bacteria → Proteobacteria	874	Open in IMG/M
3300000956\|JGI10216J12902_112323042	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300001228\|SwM_102805	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300001661\|JGI12053J15887_10378644	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300001661\|JGI12053J15887_10576017	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300002908\|JGI25382J43887_10412306	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300004114\|Ga0062593_102591659	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300005176\|Ga0066679_10541263	All Organisms → cellular organisms → Bacteria → Proteobacteria	758	Open in IMG/M
3300005177\|Ga0066690_10961085	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300005181\|Ga0066678_11061529	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300005186\|Ga0066676_10172935	All Organisms → cellular organisms → Bacteria → Proteobacteria	1372	Open in IMG/M
3300005295\|Ga0065707_10349639	All Organisms → cellular organisms → Bacteria → Proteobacteria	920	Open in IMG/M
3300005332\|Ga0066388_103598333	All Organisms → cellular organisms → Bacteria → Proteobacteria	791	Open in IMG/M
3300005332\|Ga0066388_105961839	All Organisms → cellular organisms → Bacteria → Proteobacteria	616	Open in IMG/M
3300005336\|Ga0070680_101371645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	612	Open in IMG/M
3300005434\|Ga0070709_11194979	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300005440\|Ga0070705_100105845	All Organisms → cellular organisms → Bacteria	1787	Open in IMG/M
3300005445\|Ga0070708_101264523	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300005446\|Ga0066686_10619706	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300005447\|Ga0066689_10616361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	683	Open in IMG/M
3300005447\|Ga0066689_10644791	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300005450\|Ga0066682_10738578	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300005467\|Ga0070706_101685224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	577	Open in IMG/M
3300005468\|Ga0070707_102127812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	529	Open in IMG/M
3300005536\|Ga0070697_101401620	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300005540\|Ga0066697_10372522	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300005546\|Ga0070696_100533523	All Organisms → cellular organisms → Bacteria → Proteobacteria	938	Open in IMG/M
3300005546\|Ga0070696_101036707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	687	Open in IMG/M
3300005549\|Ga0070704_100467835	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300005549\|Ga0070704_101488098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	623	Open in IMG/M
3300005553\|Ga0066695_10713682	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300005556\|Ga0066707_10527309	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300005568\|Ga0066703_10111769	All Organisms → cellular organisms → Bacteria → Proteobacteria	1616	Open in IMG/M
3300005616\|Ga0068852_100771950	All Organisms → cellular organisms → Bacteria → Proteobacteria	974	Open in IMG/M
3300005713\|Ga0066905_100123775	All Organisms → cellular organisms → Bacteria	1810	Open in IMG/M
3300005713\|Ga0066905_101117591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	701	Open in IMG/M
3300005764\|Ga0066903_100914282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1590	Open in IMG/M
3300005764\|Ga0066903_101932211	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300005764\|Ga0066903_102861957	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
3300005841\|Ga0068863_100477312	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1226	Open in IMG/M
3300005841\|Ga0068863_100820996	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300005937\|Ga0081455_10883696	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300006196\|Ga0075422_10356170	All Organisms → cellular organisms → Bacteria → Proteobacteria	639	Open in IMG/M
3300006358\|Ga0068871_102252585	All Organisms → cellular organisms → Bacteria → Proteobacteria	519	Open in IMG/M
3300006806\|Ga0079220_10038961	All Organisms → cellular organisms → Bacteria → Proteobacteria	2166	Open in IMG/M
3300006806\|Ga0079220_10970513	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300006846\|Ga0075430_101359755	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300006852\|Ga0075433_11220062	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300006854\|Ga0075425_100847027	All Organisms → cellular organisms → Bacteria → Proteobacteria	1047	Open in IMG/M
3300006871\|Ga0075434_100953290	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300006903\|Ga0075426_11110800	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300006904\|Ga0075424_100766869	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1029	Open in IMG/M
3300006954\|Ga0079219_10133985	All Organisms → cellular organisms → Bacteria → Proteobacteria	1290	Open in IMG/M
3300007255\|Ga0099791_10510129	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300009012\|Ga0066710_100290695	All Organisms → cellular organisms → Bacteria	2388	Open in IMG/M
3300009012\|Ga0066710_101805407	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300009012\|Ga0066710_104116467	Not Available	544	Open in IMG/M
3300009012\|Ga0066710_104902633	Not Available	501	Open in IMG/M
3300009148\|Ga0105243_10378955	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1308	Open in IMG/M
3300009162\|Ga0075423_12214821	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300009174\|Ga0105241_12524065	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300009177\|Ga0105248_13108029	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	528	Open in IMG/M
3300009553\|Ga0105249_12285139	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300009792\|Ga0126374_10134196	All Organisms → cellular organisms → Bacteria → Proteobacteria	1472	Open in IMG/M
3300009792\|Ga0126374_10477692	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300009792\|Ga0126374_11502604	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300009821\|Ga0105064_1131221	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300010043\|Ga0126380_11797808	Not Available	554	Open in IMG/M
3300010046\|Ga0126384_11847999	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300010047\|Ga0126382_10574941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	922	Open in IMG/M
3300010081\|Ga0127457_1068176	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300010322\|Ga0134084_10128318	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300010335\|Ga0134063_10340374	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300010359\|Ga0126376_10478946	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1146	Open in IMG/M
3300010359\|Ga0126376_10621056	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1026	Open in IMG/M
3300010359\|Ga0126376_11257175	All Organisms → cellular organisms → Bacteria → Proteobacteria	758	Open in IMG/M
3300010362\|Ga0126377_10976502	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300010362\|Ga0126377_12724457	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300010366\|Ga0126379_13629226	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300010376\|Ga0126381_104546407	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300010397\|Ga0134124_12085547	All Organisms → cellular organisms → Bacteria → Proteobacteria	605	Open in IMG/M
3300010398\|Ga0126383_10541220	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1229	Open in IMG/M
3300010398\|Ga0126383_12161121	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300010399\|Ga0134127_11499665	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300010400\|Ga0134122_10752195	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300010401\|Ga0134121_13127305	All Organisms → cellular organisms → Bacteria → Proteobacteria	511	Open in IMG/M
3300012203\|Ga0137399_11665393	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300012205\|Ga0137362_11152920	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300012362\|Ga0137361_11107838	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300012582\|Ga0137358_10257281	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1187	Open in IMG/M
3300012582\|Ga0137358_10598546	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300012685\|Ga0137397_10366039	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1074	Open in IMG/M
3300012883\|Ga0157281_1110847	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300012912\|Ga0157306_10007325	All Organisms → cellular organisms → Bacteria	2060	Open in IMG/M
3300012918\|Ga0137396_11073007	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300012922\|Ga0137394_11158991	Not Available	637	Open in IMG/M
3300012923\|Ga0137359_10908862	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300012925\|Ga0137419_11575079	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300012931\|Ga0153915_10760067	All Organisms → cellular organisms → Bacteria	1122	Open in IMG/M
3300012944\|Ga0137410_11352456	Not Available	617	Open in IMG/M
3300012948\|Ga0126375_11608660	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300012971\|Ga0126369_11237326	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	836	Open in IMG/M
3300012972\|Ga0134077_10296572	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300012977\|Ga0134087_10680068	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300013100\|Ga0157373_11095520	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300013297\|Ga0157378_12455628	All Organisms → cellular organisms → Bacteria → Proteobacteria	573	Open in IMG/M
3300014154\|Ga0134075_10042359	All Organisms → cellular organisms → Bacteria	1869	Open in IMG/M
3300014157\|Ga0134078_10051433	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1428	Open in IMG/M
3300014308\|Ga0075354_1044078	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300015053\|Ga0137405_1226009	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300015371\|Ga0132258_12119652	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1413	Open in IMG/M
3300015371\|Ga0132258_12165785	Not Available	1396	Open in IMG/M
3300015373\|Ga0132257_100009379	All Organisms → cellular organisms → Bacteria	9715	Open in IMG/M
3300017656\|Ga0134112_10202902	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300017657\|Ga0134074_1135644	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	856	Open in IMG/M
3300018032\|Ga0187788_10171534	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300019883\|Ga0193725_1124531	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300021560\|Ga0126371_10342523	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1628	Open in IMG/M
3300021560\|Ga0126371_12051598	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300025318\|Ga0209519_10169589	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300025549\|Ga0210094_1078436	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300025893\|Ga0207682_10618748	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300025915\|Ga0207693_10388155	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300025922\|Ga0207646_11491092	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300025938\|Ga0207704_11120719	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300025938\|Ga0207704_11296328	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300025941\|Ga0207711_11936077	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300025942\|Ga0207689_10017674	All Organisms → cellular organisms → Bacteria → Proteobacteria	6027	Open in IMG/M
3300026015\|Ga0208286_1021861	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300026089\|Ga0207648_10338810	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300026102\|Ga0208914_1048397	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300026116\|Ga0207674_10579053	All Organisms → cellular organisms → Bacteria → Proteobacteria	1084	Open in IMG/M
3300026116\|Ga0207674_11123781	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300026310\|Ga0209239_1239070	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300026313\|Ga0209761_1080016	All Organisms → cellular organisms → Bacteria	1698	Open in IMG/M
3300026328\|Ga0209802_1079029	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1532	Open in IMG/M
3300026332\|Ga0209803_1254667	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300026498\|Ga0257156_1026919	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300027654\|Ga0209799_1146273	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	538	Open in IMG/M
3300027874\|Ga0209465_10084231	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1550	Open in IMG/M
3300028380\|Ga0268265_10057418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2966	Open in IMG/M
3300028381\|Ga0268264_10737377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	981	Open in IMG/M
3300028809\|Ga0247824_10418726	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300030336\|Ga0247826_10384039	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300031226\|Ga0307497_10384929	All Organisms → cellular organisms → Bacteria → Proteobacteria	666	Open in IMG/M
3300031231\|Ga0170824_123686552	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300031231\|Ga0170824_123918850	All Organisms → cellular organisms → Bacteria → Proteobacteria	934	Open in IMG/M
3300031446\|Ga0170820_14373904	Not Available	1246	Open in IMG/M
3300031474\|Ga0170818_108582691	Not Available	1465	Open in IMG/M
3300031561\|Ga0318528_10274240	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300031668\|Ga0318542_10494837	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300031679\|Ga0318561_10294999	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300031682\|Ga0318560_10739310	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300031682\|Ga0318560_10783080	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300031720\|Ga0307469_10696104	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300031736\|Ga0318501_10041532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2102	Open in IMG/M
3300031740\|Ga0307468_102415439	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300031747\|Ga0318502_10137158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	1386	Open in IMG/M
3300031754\|Ga0307475_10424457	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300031764\|Ga0318535_10444923	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300031781\|Ga0318547_10492509	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300031820\|Ga0307473_10012127	All Organisms → cellular organisms → Bacteria	3187	Open in IMG/M
3300031821\|Ga0318567_10687826	All Organisms → cellular organisms → Bacteria → Proteobacteria	580	Open in IMG/M
3300031896\|Ga0318551_10630694	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300031942\|Ga0310916_11212364	All Organisms → cellular organisms → Bacteria → Proteobacteria	624	Open in IMG/M
3300031946\|Ga0310910_10034620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3464	Open in IMG/M
3300032013\|Ga0310906_10442840	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300032067\|Ga0318524_10744388	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300032067\|Ga0318524_10791331	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300032094\|Ga0318540_10565908	All Organisms → cellular organisms → Bacteria → Proteobacteria	548	Open in IMG/M
3300032174\|Ga0307470_10072228	Not Available	1868	Open in IMG/M
3300032180\|Ga0307471_100121645	All Organisms → cellular organisms → Bacteria	2433	Open in IMG/M
3300032180\|Ga0307471_100431226	All Organisms → cellular organisms → Bacteria	1453	Open in IMG/M
3300032180\|Ga0307471_100533146	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300032180\|Ga0307471_101092818	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300032180\|Ga0307471_101415442	Not Available	855	Open in IMG/M
3300032180\|Ga0307471_103171321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Frateuria → unclassified Frateuria → Frateuria sp. Soil773	583	Open in IMG/M
3300033432\|Ga0326729_1011919	All Organisms → cellular organisms → Bacteria	1506	Open in IMG/M
3300034661\|Ga0314782_186537	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.77%
Host-Associated	Host-Associated	18.23%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.66%
Plants	Host-Associated → Plants	18.23%
Aquatic	Environmental → Aquatic	1.10%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.11%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.84%
Freshwater	Environmental → Aquatic → Freshwater	0.55%
Marine	Environmental → Aquatic → Marine	0.55%
Peat	Environmental → Terrestrial → Peat	0.55%
Roots	Host-Associated → Plants → Roots	0.55%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.54%
Loam	Environmental → Terrestrial → Soil → Loam	13.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.29%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.18%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.66%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.55%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.55%
Sand	Environmental → Terrestrial → Soil → Sand	0.55%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.55%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.55%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.55%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.29%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.18%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.18%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.08%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.21%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.21%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.66%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.55%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.55%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.55%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.55%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.55%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.55%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.39%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.18%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.63%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.08%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.21%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.21%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.21%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.66%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.66%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.66%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.10%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.10%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.55%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.55%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.55%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.55%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.55%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.55%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.55%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.55%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.55%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.55%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001228	Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA - 12_joined	Host-Associated	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009821	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010081	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014308	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025318	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1	Environmental	Open in IMG/M
3300025549	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026015	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401 (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026102	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1 (SPAdes)	Environmental	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033432	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF6AY SIP fraction	Environmental	Open in IMG/M
3300034661	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1005941622	3300000559	Soil	MKFLFMIFHDEGVLDALPKGEMQTLVDSALDYDEEIRQSGHYIVS
JGI10214J12806_101324581	3300000891	Soil	MKFMFMIYHDENVLDALPEGEMQALIDSALDYDEEIRRSGHYIV
JGI1027J12803_1072073722	3300000955	Soil	MKFMFTIYHDPKVMDALPEDEMQALVDSAIEYSEELERSGH
JGI10216J12902_1123230421	3300000956	Soil	MKFMFTIYHEEKVLDAMPEKEMQALVDSAIEYAEEIRRSGH
SwM_1028051	3300001228	Switchgrass Rhizosphere	MKFMFTIYHDGKVLAAMADNERQALVDSAIEYAEELQTERSLRRLECSAA
JGI12053J15887_103786442	3300001661	Forest Soil	MKFLFLIYHDEKTLDTLPDGEMQDLVDSALDYDEKIRQSGHYIV
JGI12053J15887_105760173	3300001661	Forest Soil	MKFLFMIFHDEKTLDALPKPQMQTLVDSALDYTDELRRSGHFIV
JGI25382J43887_104123062	3300002908	Grasslands Soil	MKFMFTIYHDENVLDAMPEKEMQALVDSAIEYAEEIRRSGHY
Ga0062593_1025916592	3300004114	Soil	MQIQEDAMTFLFTIYHDPKVLDAIPENEMQALIDSAIEYAEEI
Ga0066679_105412633	3300005176	Soil	MKFMFMIYHDENVLDAMPEKEMQSLVDSAIEYAEEIRRSGHYI
Ga0066690_109610851	3300005177	Soil	MKFMFTIYHDENVLDAMPETEMQALVDSAIEYAEEIRRSGHYIVSDALQRA
Ga0066678_110615291	3300005181	Soil	MKFMFTIYHDENVLDAMPETEMQALVDSAIEYAEEIRRSGHYIVSDALQR
Ga0066676_101729351	3300005186	Soil	MKFMFMIYHDQNVLDAMPEKEMQALVDSAIEYAEEIRRSGHYI
Ga0065707_103496392	3300005295	Switchgrass Rhizosphere	MKFLFMIFHDEGVLDALPKDEMQTLVDSALDYDEEIRQSGHYIVS
Ga0066388_1035983331	3300005332	Tropical Forest Soil	MRFVFMIHHDEDVLDALPEQELQGLIDSALDYTEGLRRSGHYIA
Ga0066388_1059618391	3300005332	Tropical Forest Soil	MRFMFTIHHDENVLDALPEREMQALIDSALDYTDDLRRSGHYIVSDALQ
Ga0070680_1013716451	3300005336	Corn Rhizosphere	MKFMFMIYRDETVLDGLPKDEMQALVDSALDYDDEIRRSGHYI
Ga0070709_111949792	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKFVFLIYHEEKTLDALPAKEMQTLVDGALDYDEEIRRSG
Ga0070705_1001058451	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKFLFMIYHDETMMDALPKKEMQGLIDSALEYDEEIKKSGHYIVSNALQ
Ga0070708_1012645231	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKFVFLIYHDEKTLDALPGKEMQALVDGALDYDEEIRRSG
Ga0066686_106197061	3300005446	Soil	MKFMFMIYHDENVLDAMPEKEMQPLVDSAIEYAEEIRRSGHYI
Ga0066689_106163611	3300005447	Soil	MKFMFTIYHDENVLNAMPEKEMQALVDSAIEYAEEIRRSGHYI
Ga0066689_106447911	3300005447	Soil	MKFMFTIYHDEKVMDAMPEKEMQALVDSAIEYAEEIRRSGHYI
Ga0066682_107385782	3300005450	Soil	MKFMFVIYHDENVLDAMPEKEMQPLVDSAIEYAEEIRRSGHYIAS
Ga0070706_1016852242	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKFVFLIYHEEKTLDALPAKEMQTLVDGALDYDEEIRRSGHYIVSNALQRAR
Ga0070707_1021278122	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKFMFTIYHDENVLDAMPENEMQALVDSAIEYAEEIRRSGHYIVS
Ga0070697_1014016202	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKFMFTIYHDGNVMAAMADNERQALVDSAIEYAEELQRSGHF
Ga0066697_103725221	3300005540	Soil	MKFMFTIYHDENVLDAMPEKEMQALVDSAIEYAEELR
Ga0070696_1005335231	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MKFLFTIYHEEKTLDALSEREMQTLVDSALEYDEEIRRSGHYI
Ga0070696_1010367071	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MKFLFMIYHDERVLEALPEQEMQALVDSALDYDEEIRRSGHY
Ga0070704_1004678353	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MKFVFLIYHDETTLDALPGKEMQALVDGALDYDEEIRRSGHYIV
Ga0070704_1014880982	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MKFMFMIYHDETVLDALPKGEMQALIDSALDYDDEIRETGHYIVSD
Ga0066695_107136821	3300005553	Soil	MKFMFMIYHDENVLDAMPEKEMQPLVDSAIEYAEEIRRS
Ga0066707_105273091	3300005556	Soil	MKFMFTIYHDPTVLDAMPEKEMQALVDSAIEYAEE
Ga0066703_101117693	3300005568	Soil	MRFMFTIYHDEKVMDAMPEKEMQALVDSAIEYAEELRQSGHYI
Ga0068852_1007719501	3300005616	Corn Rhizosphere	MKFLFMIFHDEGVLDALPKDEMQTLVDSALDYDGEIRQSGHYIVS
Ga0066905_1001237751	3300005713	Tropical Forest Soil	MKFMFTIYHDENVMDAMPEQERQALIDSAIEYAEEIRR
Ga0066905_1011175911	3300005713	Tropical Forest Soil	MKFMFMIYHDERDLDAMPKGEMQALVDAALDYTDEIDKSGHRIVSNALQR
Ga0066903_1009142823	3300005764	Tropical Forest Soil	MKFMFMIYHDENVLDSMPEGELQTLIDSALDYDETIRKSGHYIVSNA
Ga0066903_1019322111	3300005764	Tropical Forest Soil	MKFLFAIYHEEKMLDELPERQMQTLVDAALDYTEEIRQSGHYI
Ga0066903_1028619571	3300005764	Tropical Forest Soil	MRFVFMIYHDENVLDALPEGERQALIDSSLDYDDEL
Ga0068863_1004773122	3300005841	Switchgrass Rhizosphere	MKFMFTIYHDENVLDAMPAKEMQALVDSAIEYAEEIR*
Ga0068863_1008209961	3300005841	Switchgrass Rhizosphere	MKFLFLIYHDETVMDALPEGEMQTLVDSALDYDEQIRQSGHYIVSNALQ
Ga0081455_108836962	3300005937	Tabebuia Heterophylla Rhizosphere	MRFMFMIHHEEKVLDAMPEKEMQALVDSAIEFAEEIERTGH
Ga0075422_103561701	3300006196	Populus Rhizosphere	MKFIFMIYHDESVLEALPDDEMQALVDSALEYDDE
Ga0068871_1022525852	3300006358	Miscanthus Rhizosphere	MKFVFLIYHDETTLDALPPKEMQTLVDSALDYDETIRRSG
Ga0079220_100389611	3300006806	Agricultural Soil	MKFLFLIYHEEKVLDTMPPKEMQKLVDSALDYDDEIH
Ga0079220_109705132	3300006806	Agricultural Soil	MKFLFMIFHDEGTLDSLPKKEMQTLVDSALDYTEELGKSGHYIRR*
Ga0075430_1013597551	3300006846	Populus Rhizosphere	MKFMFTIYHDENVLNAMPEKEMQALVDSAIEYAEE
Ga0075433_112200621	3300006852	Populus Rhizosphere	MKFMFTIYHDENVLDAMPEKEMQALVDSAIEYDKEIR*
Ga0075425_1008470271	3300006854	Populus Rhizosphere	MKFMFTIYHDEKVMDAMPENEMQTLVDSAIEYAEELRRSGHYI
Ga0075434_1009532901	3300006871	Populus Rhizosphere	MKFMFAINHDEKVLDAMPEKEMQALVDSAIEYAEDL
Ga0075426_111108002	3300006903	Populus Rhizosphere	MKFMFAINHDEKVLDAMPEKEMQALVDSAIEYAEEIRRSGHYIV
Ga0075424_1007668691	3300006904	Populus Rhizosphere	MKFMFTIYHDPKVLDAMPEKEMQALVDSAIEYAEEIRQS
Ga0079219_101339853	3300006954	Agricultural Soil	MKFLFMIYHEEKVLDGMPPEDMQTLVDSALEYDDEIRR
Ga0099791_105101291	3300007255	Vadose Zone Soil	MKFMFTIYHDEKLLDAMPEQEMQALVDGAIEYAEEIRRSGHYVASDALQRAQTART
Ga0066710_1002906955	3300009012	Grasslands Soil	MKFMFMIYHDENVLDAMPEKEMQPLVDSAIEYAEEIR
Ga0066710_1018054073	3300009012	Grasslands Soil	MKFMFMIYHDENVLDAMPEKEMQPLVDSAIEYAEEIRRSGHYIV
Ga0066710_1041164672	3300009012	Grasslands Soil	MKFLFMIFHDEKTLDALPEPQMQTLVDSALDYMEELRRSGHFIVSNALQRAR
Ga0066710_1049026332	3300009012	Grasslands Soil	MKFMFMIYHDENVLDAMPEKEMQALVDSAIEYAEE
Ga0105243_103789551	3300009148	Miscanthus Rhizosphere	MKFMFTIYHDEKVLDAMPEQEMRPLVDSAIEYAEEIR
Ga0075423_122148211	3300009162	Populus Rhizosphere	MKFMFTIYHHENVLDSMPEKELQALVDSAIEYAEEIRQSGHY
Ga0105241_125240651	3300009174	Corn Rhizosphere	MKFLFMIFHDEHILDSMPEGEMQTLVDSALGYDDEIRRSGHYIV
Ga0105248_131080291	3300009177	Switchgrass Rhizosphere	MRPPEARALAQANHEEDPMKFLFLIYHDESVLDALAEGEMQTLVASALDYDEQIRQSGHYIVSN
Ga0105249_122851391	3300009553	Switchgrass Rhizosphere	MKFMFMIYHDETVLDALPKGEMQALIDSALDYDDEIRETGHYIVS
Ga0126374_101341963	3300009792	Tropical Forest Soil	MKFLFMIFHDEGTLDAMPKDEMQTLVDAAIDYTDEIEKSGH
Ga0126374_104776922	3300009792	Tropical Forest Soil	MKFMFTIYHDENVMDAMPEQERQALIDSAIEYAEEI
Ga0126374_115026041	3300009792	Tropical Forest Soil	MKFMFTIYHDEKVLDAMPENEMRALVDSAIEYADELR
Ga0105064_11312211	3300009821	Groundwater Sand	VIYHDANVLDEMPEKERQPLVDSAIEYAEEIRRSGHYIVSNA
Ga0126380_117978081	3300010043	Tropical Forest Soil	MFAIYHDENVLDALSGGEMQALVDAALDYTDGLRRSGHYIASDAL
Ga0126384_118479991	3300010046	Tropical Forest Soil	MKFLFMIFHDEKTLDELPGKEMQTLVDAALDYTEEIRDSGHYIVSN
Ga0126382_105749413	3300010047	Tropical Forest Soil	MKFLFMIFHEEATLDALPEKEMQTLVDSALDYDEEIRES
Ga0127457_10681761	3300010081	Grasslands Soil	MKFMFMIYHDENVLNALPEGELQTLIDSALDYDETIRRSGHYIVSDALQRS
Ga0134084_101283183	3300010322	Grasslands Soil	MKFMFTIYHDEKVMEAMPEKEKQALVDSAIEYAEEIRSSGHYI
Ga0134063_103403742	3300010335	Grasslands Soil	MKFMFTIYHEENVLDAMPEKEMQALVDSAIEYAEEIRRSGHY
Ga0126376_104789461	3300010359	Tropical Forest Soil	MKFMFVIYHDEKVLDAMPEKDMQALVDSAIEYAEELRR
Ga0126376_106210561	3300010359	Tropical Forest Soil	VRRIAMKFMFTIYHDPKVMDALPEKEMQALVDSAIEYSEEL
Ga0126376_112571753	3300010359	Tropical Forest Soil	MRFMFMIYHDEREMDVLPKEEMQTLIDSALEYDEKIKQSGHYIVSDALQSSRTS
Ga0126377_109765021	3300010362	Tropical Forest Soil	MMKFMFMIYHDENQLEAMPEVEKQTLIDSALDYDEEIRRSGHYI
Ga0126377_127244571	3300010362	Tropical Forest Soil	MKFMFTIHHDPKVMDAMPEKEMQALVDSAIEYAEEL
Ga0126379_136292261	3300010366	Tropical Forest Soil	MKFLFMIFHDEGTLDAMPMDEMQTLVDAAIDYTDEIEKSGHYIVSNALQRA
Ga0126381_1045464071	3300010376	Tropical Forest Soil	MKFLFMIFHDEGTLDAMPKDEMQTLVDAAIDYTDEIEKSGHYIVSNALQR
Ga0134124_120855471	3300010397	Terrestrial Soil	VQASHEEDAMKFLFLIYHDETVMDALPEGEMQTLIDSALDYDEEIRQSGHYIVSNA
Ga0126383_105412202	3300010398	Tropical Forest Soil	MKFMVTIFHDENVLDAMPEKEMQALVDSAIEYAEELRR
Ga0126383_121611211	3300010398	Tropical Forest Soil	MKFMFTIHHDEKVLDAMPEKEMQALVDSAIEYAEE
Ga0134127_114996652	3300010399	Terrestrial Soil	MKFMFTIYHDEQVLDAMPEKEMQALVDSAIEYAEEIRRS
Ga0134122_107521953	3300010400	Terrestrial Soil	MKFLFMIFHDENILDSMPEGEMQTLVDSALGYDDEIRRSGHY
Ga0134121_131273051	3300010401	Terrestrial Soil	MKFMFMIYHDETVLDALPKGEMQALIDSALDYDDEIRETGHYIVSDALQSSRTARTIR
Ga0137399_116653931	3300012203	Vadose Zone Soil	MKFLFLIYHDEKTLDTLPDGEMQDLVDSALDYDEKIRQSGHY
Ga0137362_111529201	3300012205	Vadose Zone Soil	MKFMFMIYHDEDELDALPEGEMQALVDSALDYDAEIRRSGHYIVS
Ga0137361_111078383	3300012362	Vadose Zone Soil	MKFMFMIYHDENVLNALPEEEMQALIDSALDYDETIRQS
Ga0137358_102572813	3300012582	Vadose Zone Soil	MKFMFLIYHDENVLHALPEKEMQALIDSALDYDEE
Ga0137358_105985463	3300012582	Vadose Zone Soil	MKFMFMIYHDESVLDAMPDKEMQALVDSAIEYAEEIRRSGHYIVSDALQR
Ga0137397_103660391	3300012685	Vadose Zone Soil	MRFMFMIYHDENVLDAMPEKELQALVDSAIEYAEEIRGSGHYI
Ga0157281_11108473	3300012883	Soil	MKFLFTIFHDEQTLDDMPEPEMQALVDAALDYDEEIR
Ga0157306_100073254	3300012912	Soil	VQASHEEDAMKFLFLIYHDETVLDALPKGEMQALVDSALEYDEEIRQSGHYIVSN
Ga0137396_110730071	3300012918	Vadose Zone Soil	MKFMFTIYHDENVLDAMPEKEMQALVDSAIEYAEEIRRSGHYIVSD
Ga0137394_111589911	3300012922	Vadose Zone Soil	MKFLFMIFHDEKTLDGLPEPQMQTLVDSALDYMEELRRSGHFIVSNALQRARTART
Ga0137359_109088621	3300012923	Vadose Zone Soil	MKFMFMIYHDENVLDAMPEKEMQALVDSAIEYAEEIRRSGHYIVSD
Ga0137419_115750792	3300012925	Vadose Zone Soil	MKFMFMIHHDQQVMDAMPEKEMQALVDSAIEYAEEI
Ga0153915_107600674	3300012931	Freshwater Wetlands	MKFLFLIYHDEKILDALPEKEMQALVDGALDYDEEIRRSGHYIVSN
Ga0137410_113524561	3300012944	Vadose Zone Soil	MKFLFMIFHDEKTLDALPEPQMQTLVDSALDYMEELRRSGHFIVSNA
Ga0126375_116086602	3300012948	Tropical Forest Soil	MKFMFTIYHDEKVLDEMPEKEMQTLVDSAIEYAEEIRRSGHYIL
Ga0126369_112373262	3300012971	Tropical Forest Soil	MKFMFMIFHDEKTLDELPGKEMQTLVDAALDYTEEIRESGHYI
Ga0134077_102965723	3300012972	Grasslands Soil	MKFMFTIYHDENVLNAMPEKEMQALVDSAIEYAEEIRRSGH
Ga0134087_106800682	3300012977	Grasslands Soil	MKFMFTIYHDENVLDAMPEKERQALVDSAIEYAEEIRQSG
Ga0157373_110955201	3300013100	Corn Rhizosphere	MKFMFTIYHDEHVLDAMPEQEMRPLVDSAIEYAEELRQSGHYIA
Ga0157378_124556281	3300013297	Miscanthus Rhizosphere	MKFMFMIYHDETVLDALPKGEMQALIDSALDYDDEIRETGHYIVSDALQSSRTARTI
Ga0134075_100423591	3300014154	Grasslands Soil	MKFMFMIYHDENVLDAMPEKEMQPLVDSAIEYAEE
Ga0134078_100514332	3300014157	Grasslands Soil	MKFMFMIYHDENVLDAMPEKEMQPLVDSAIEYAEEIRRSGHYIA
Ga0075354_10440781	3300014308	Natural And Restored Wetlands	MKFLFLIYHDEQTLDALADAEMRTLVDGALDYDEE
Ga0137405_12260093	3300015053	Vadose Zone Soil	MKFLFLIYHDEKTLDTLPDGEMQDLVDSALDYDEKIRQSG
Ga0132258_121196522	3300015371	Arabidopsis Rhizosphere	MKFMFTIYHDENVLDAMPEKEMRALVDSAIEYAEEIR*
Ga0132258_121657852	3300015371	Arabidopsis Rhizosphere	MKFMFTIYHDENVLDAMPEQEMQALVDSAIECAEEIR*
Ga0132257_1000093795	3300015373	Arabidopsis Rhizosphere	MKFMFTIYHDENVLDAMPEKEMQALVDSAIEYAEEIR*
Ga0134112_102029021	3300017656	Grasslands Soil	MKFMFMIYHDENVLDAMSEKEMQPLVDSAIEYAEEIRRSGHYIAS
Ga0134074_11356441	3300017657	Grasslands Soil	MKFMFTIYHDENVLDAMPEKEMQALVDSAIEYAEE
Ga0187788_101715341	3300018032	Tropical Peatland	MKFMFTIYHDERMMEAMPQQEMQGLVDSALEYVDEIK
Ga0193725_11245311	3300019883	Soil	MKFLFMIFHDENILDSMPEGEMRTLVDSALGYDDEIRRSGH
Ga0126371_103425232	3300021560	Tropical Forest Soil	MKFMFTIYHDENVLDAMPEKERQALVDSAIEYAEEIRR
Ga0126371_120515981	3300021560	Tropical Forest Soil	MKFMFTIYHDEHVMDAMPEQERQALIDSAIEYAEEIRRGGHYVA
Ga0209519_101695894	3300025318	Soil	MRFMFMIYHDETVLDALPEAEMQALVDSALDYDEEIRLSG
Ga0210094_10784362	3300025549	Natural And Restored Wetlands	MKFMFVICHDEKVLDAMPEKESQAVVDSAIEYAEEIRRSGHFIVSNAL
Ga0207682_106187482	3300025893	Miscanthus Rhizosphere	MKFMFTIYHDGNVMAAMADNERQALVDSAIEYAEEL
Ga0207693_103881551	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKFVFLIYHDEKTLDALPGKEMQALVDGALDYDEEIRRSGHY
Ga0207646_114910922	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKFLFMIYHDEKTLDDMPEEEMQTLVDSALDYMEEIRRS
Ga0207704_111207191	3300025938	Miscanthus Rhizosphere	MKFMFTIYHDEHVLDAMPEQEMRPLVDSAIEYAEELRQSGH
Ga0207704_112963281	3300025938	Miscanthus Rhizosphere	MRFMFMIHHDEDELRALPADEMRELVDGALEYTDELRRTGHYIVSDALQFSPTARTIRVR
Ga0207711_119360771	3300025941	Switchgrass Rhizosphere	MKFMFTIYHDEHVLDAMPEQEMRPLVDSAIEYAEELRQSGHY
Ga0207689_100176741	3300025942	Miscanthus Rhizosphere	MKFLFMIFHDENILDSMPEGEMQTLVDSALGYDDEIR
Ga0208286_10218612	3300026015	Rice Paddy Soil	MKFLFLIYHDEQILDALPGKEMQALVDGALDYDEEIRRSGH
Ga0207648_103388104	3300026089	Miscanthus Rhizosphere	MKFLFMIFHDENILDSMPEGEMQTLVDSALGYDDEIRRSGGIFA
Ga0208914_10483971	3300026102	Natural And Restored Wetlands	MKFMFVICHDEKVLDAMPEKESQAVVDSAIEYAEEIRRSGHFIVSN
Ga0207674_105790531	3300026116	Corn Rhizosphere	MKFLFLIYHDEKVLDALPEGEMQTLIDSALDYDEEIRQSGHYIVS
Ga0207674_111237811	3300026116	Corn Rhizosphere	VKFMFMIYHDERDLEALPRGEMQALVNSALDYDDEIRRSGHYI
Ga0209239_12390703	3300026310	Grasslands Soil	MKFMFMIYHDENVLDAMPEKEMQPLVDSAIEYAEEIRRSG
Ga0209761_10800161	3300026313	Grasslands Soil	MKFMFMIYHDENMLEALPKMEMQTLIDSALDYDDEIRRSGHYIVS
Ga0209802_10790293	3300026328	Soil	MRFMFTIYHDEKVMDAMPEKEMQALVDSAIEYAEEL
Ga0209803_12546671	3300026332	Soil	MKFMFMIYHDENVLDAMPEKEMQPLVDSAIEYAEEI
Ga0257156_10269192	3300026498	Soil	MKFMFTIYHDENVLNAMPEKEMLALVDSAIEYAEEIR
Ga0209799_11462732	3300027654	Tropical Forest Soil	MKFMFMIYHDENQLETLPEGEVQTLIDSALDYDDEIRK
Ga0209465_100842311	3300027874	Tropical Forest Soil	MKFMFTIYHDENVMDAMPEQERQALIDSAIEYAEEIRRSGH
Ga0268265_100574186	3300028380	Switchgrass Rhizosphere	MKFLFLIYHEEKVLDTMPPKEMQKLVDSALDYDDEIRGSGH
Ga0268264_107373771	3300028381	Switchgrass Rhizosphere	MKFMFMIYHDETVLDALPKGEMQALIDSALDYDDEIRETGH
Ga0247824_104187263	3300028809	Soil	MKFLFMIFHDENILDSMPEGEMQTLVDSALGYDDEIRRSGHYI
Ga0247826_103840393	3300030336	Soil	MKFLFLIYHEEKVLDAMPPEEMQKLVDSALDYDDEIRGS
Ga0307497_103849292	3300031226	Soil	MKFMFMIYHDENVLDALPEGEMQALIDSALDYDDEIRQSGHYIV
Ga0170824_1236865521	3300031231	Forest Soil	MKFMFTIYHDENVLDAMPEKEMQALVDSAIEYAEEIR
Ga0170824_1239188502	3300031231	Forest Soil	MKFLFMIFHDEGVLDALPKGEMQTLVDSALDYDEEIRQSGHYIVSNAL
Ga0170820_143739043	3300031446	Forest Soil	MKFLFMIFHDEGVLDALPKGEMQTLVDSALDYDEE
Ga0170818_1085826911	3300031474	Forest Soil	MKFLFMIFHDEGVLDALPKGEMQTLVDSALDYDEEIRQSGHYIVSNALQRARSA
Ga0318528_102742401	3300031561	Soil	MRFLFTIHHDEHELDALPEGERQALIDAALDYTDELRR
Ga0318542_104948371	3300031668	Soil	MKFMFTIHHDPKVMDAMPEKEMQALVDSAIEYAEEIRQSGHYIVSNAL
Ga0318561_102949992	3300031679	Soil	MKFMFTIHHDPKVMDAMPEKEMQALVDSAIEYAEELRQSGHYIA
Ga0318560_107393102	3300031682	Soil	MKFMFTIHHDPKVMDAMPEKEMQALVDSAIEYAEEIRQSGH
Ga0318560_107830802	3300031682	Soil	MRFMFMIYHDEREMEALPKEEMQTLIDSALEYDEKIKQSGHYIVSDALQSSRT
Ga0307469_106961042	3300031720	Hardwood Forest Soil	MKFMFTIYHDEHVLDAMPEKDRQALVDGAIEYAEEIRRSGH
Ga0318501_100415321	3300031736	Soil	MKFMFMIFHDEKTLDELPGKEMQTLVDADLLGVIE
Ga0307468_1024154391	3300031740	Hardwood Forest Soil	MKFMFVIYHDENVLDAMPETEMQDLVDSAIEYAEEIRRSGHYVASD
Ga0318502_101371581	3300031747	Soil	MKFMFMIFHDEKTLDELPGKEMQTLVDAALDYTEEIRES
Ga0307475_104244571	3300031754	Hardwood Forest Soil	MKFMFVIYHDEQTLDALPAGEMQTLVDSALDYTEEIRRS
Ga0318535_104449232	3300031764	Soil	MKFMFMIYHDERDLDALPKGEMQALVDAALDYTDEIDRSGHRI
Ga0318547_104925092	3300031781	Soil	MKFMFTIHHDPKVMDAMPEKEMQALVDSAIEYAEEIRQSGHY
Ga0307473_100121271	3300031820	Hardwood Forest Soil	MKFMFIIFHDEKTLDALPEPEKQTLVDSALDYMDDLRRSGHFIVSNALQRG
Ga0318567_106878261	3300031821	Soil	MKFLFMIYHDENQLEAMPEGEKQTLIDSALDYDDEIRRSGHYIVSD
Ga0318551_106306942	3300031896	Soil	MKFLFMIYHDENQLEAMPEGEKQTLIDSALDYDDEIRRSGHY
Ga0310916_112123641	3300031942	Soil	MRFMFMIYHDEREMEALPKEEMQTLIDSALEYDEKIKQSGHYI
Ga0310910_100346201	3300031946	Soil	MKFMFMIFHDEKTLDELPGKEMQTLVDAALDYTEE
Ga0310906_104428401	3300032013	Soil	MKFMFMIYHDENVLDALPEGEMQALIDSALDYDEE
Ga0318524_107443882	3300032067	Soil	MKFMFMIFHDEKTLDELPGKEMQTLVDAALDYTEEIRESGHYIV
Ga0318524_107913311	3300032067	Soil	MKFMFTIHHDPKVMDAMPEKEMQALVDSAIEYAEEIRQSGHYIVSN
Ga0318540_105659081	3300032094	Soil	MRFMFMIYHDEREMEALPKEEMQTLIDSALEYDEKIKQSGHYIVS
Ga0307470_100722282	3300032174	Hardwood Forest Soil	MKFMFTIYHDENVLDAMPEKEMRALVDSAIEYAEEIR
Ga0307471_1001216455	3300032180	Hardwood Forest Soil	MKFVFLIYHEEKTLDALPAKEMQTLVDGALDYDEE
Ga0307471_1004312261	3300032180	Hardwood Forest Soil	MKFMFMIYHDENVLDSLPEGELQTLIDSALDYDETIRKSGHYIVSDA
Ga0307471_1005331461	3300032180	Hardwood Forest Soil	MKFVFLIYHDEKTLEALPGKEMQALVDGALDYDEEIRRSGHYIVSN
Ga0307471_1010928181	3300032180	Hardwood Forest Soil	MKFMFMIYHDENVLNAMPEREMQALVDSAIEYAEE
Ga0307471_1014154422	3300032180	Hardwood Forest Soil	MKFLFTIYHDEKALEALPEGEMQALVDSALDYMEEIRKSGHYHRPRS
Ga0307471_1031713211	3300032180	Hardwood Forest Soil	MKFLFMIYHEEKMLDAVPEGEMQTLVDGALDYSEEIRRSGHYIVSNALQRART
Ga0326729_10119194	3300033432	Peat Soil	MKFLFLIYHDERTLDALPEGEMQALVDSALDYDEEIRQS
Ga0314782_186537_390_530	3300034661	Soil	MKFMFMIYHDENVLDALPTGEMQALIDSALDYDDEIRQSGHYIVSDA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F031915

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences