Metagenome / Metatranscriptome Family F025407

Basic Information
Family ID	F025407
Family Type	Metagenome / Metatranscriptome
Number of Sequences	202
Average Sequence Length	39 residues
Representative Sequence	MSNCVVGSGGSRLPCSIIAEHSVEGCDHFSHDGDDDDLGF
Number of Associated Samples	117
Number of Associated Scaffolds	202

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.47 %
% of genes near scaffold ends (potentially truncated)	98.02 %
% of genes from short scaffolds (< 2000 bps)	81.68 %
Associated GOLD sequencing projects	109
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.13

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (88.119 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.129 % of family members)
Environment Ontology (ENVO)	Unclassified (67.327 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.030 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64 1AF_2010_repII_A100DRAFT_10251732 2Ga0066388_1080613041 3Ga0070660_1014536231 4Ga0070674_1004810382 5Ga0070711_1017978822 6Ga0070708_1013390291 7Ga0070672_1009774382 8Ga0066704_107399762 9Ga0066905_1001978261 10Ga0066905_1003947241 11Ga0066903_1006789391 12Ga0066903_1016005361 13Ga0066903_1021080652 14Ga0066903_1081803831 15Ga0070715_100743533 16Ga0070716_1001772241 17Ga0074055_100050813 18Ga0074062_128902652 19Ga0075428_1025712001 20Ga0075431_1000448551 21Ga0068865_1010044111 22Ga0126376_102140083 23Ga0182036_107164461 24Ga0182036_117438332 25Ga0182041_103400402 26Ga0182041_106656731 27Ga0182041_107820201 28Ga0182033_103222702 29Ga0182033_106386481 30Ga0182033_113072021 31Ga0182033_119126781 32Ga0182033_119612892 33Ga0182032_103877321 34Ga0182034_102132301 35Ga0182034_112915882 36Ga0182040_101523441 37Ga0182040_102369931 38Ga0182040_107942121 39Ga0182037_103305274 40Ga0182037_103738212 41Ga0182039_100350061 42Ga0182039_109865662 43Ga0182038_100906781 44Ga0182038_103370291 45Ga0184611_11393732 46Ga0184635_100630171 47Ga0184635_102325211 48Ga0184625_101418343 49Ga0184625_101500401 50Ga0184625_104615092 51Ga0184628_103530452 52Ga0193707_10893222 53Ga0193729_10709504 54Ga0193696_10569552 55Ga0193696_11743371 56Ga0210378_102997102 57Ga0210406_102187153 58Ga0210387_112351791 59Ga0126371_101073311 60Ga0126371_106324441 61Ga0222623_102211932 62Ga0222622_103248891 63Ga0179589_100862411 64Ga0207684_109806853 65Ga0207684_116693591 66Ga0207693_107030422 67Ga0207712_111402471 68Ga0207639_116794611 69Ga0209465_102399362 70Ga0307285_100933601 71Ga0307297_100677031 72Ga0307280_100669803 73Ga0307280_100831742 74Ga0307288_100848352 75Ga0307323_100569351 76Ga0307287_101513611 77Ga0307296_101213071 78Ga0307296_105519991 79Ga0307312_107321752 80Ga0307289_100804701 81Ga0307286_100227281 82Ga0307286_100249631 83Ga0307304_101223781 84Ga0170820_129341741 85Ga0318516_100242131 86Ga0318516_101099461 87Ga0318534_100266454 88Ga0318541_100238041 89Ga0318541_100253941 90Ga0318541_102252292 91Ga0318538_100411641 92Ga0318538_100895231 93Ga0310887_104325731 94Ga0318571_100937481 95Ga0318528_102906642 96Ga0318528_106624461 97Ga0318515_100544631 98Ga0318515_103611121 99Ga0310915_100609271 100Ga0310915_101107075 101Ga0310915_101432491 102Ga0310915_101988653 103Ga0310915_102403321 104Ga0310915_104812422 105Ga0318542_101778662 106Ga0318561_100942883 107Ga0318561_102466181 108Ga0318560_100213821 109Ga0306917_103105821 110Ga0306917_103354993 111Ga0318493_108413122 112Ga0318501_100617811 113Ga0318501_101986791 114Ga0306918_100544295 115Ga0306918_102266182 116Ga0306918_102937792 117Ga0306918_106604441 118Ga0318502_108342391 119Ga0318492_102791952 120Ga0318537_100442041 121Ga0318537_100532404 122Ga0318509_100223886 123Ga0318509_105022002 124Ga0318521_105281162 125Ga0318521_108614301 126Ga0318546_110190102 127Ga0318543_100076161 128Ga0318543_101265453 129Ga0318552_105329681 130Ga0318529_104677332 131Ga0318529_105670511 132Ga0318503_100280101 133Ga0318503_100659232 134Ga0318576_102893001 135Ga0318550_101953411 136Ga0318523_106212591 137Ga0318565_101620972 138Ga0318497_105900611 139Ga0318568_106061571 140Ga0318567_108131711 141Ga0318499_101558242 142Ga0310917_101625942 143Ga0310917_110967412 144Ga0306919_100217941 145Ga0306919_100923071 146Ga0306919_115158092 147Ga0306925_100768135 148Ga0306925_101570911 149Ga0306925_101791043 150Ga0306925_102006311 151Ga0306925_103291604 152Ga0306925_105314432 153Ga0306925_114847122 154Ga0318536_100816703 155Ga0306923_102280651 156Ga0306923_104567902 157Ga0306923_106366422 158Ga0306923_106579031 159Ga0306923_106813523 160Ga0306923_110897171 161Ga0306923_114439272 162Ga0306923_115374361 163Ga0306923_119121471 164Ga0306921_103402381 165Ga0306921_105299961 166Ga0306921_105568921 167Ga0306921_106927161 168Ga0306921_127333171 169Ga0310912_100961931 170Ga0310912_108159761 171Ga0310912_110109661 172Ga0310916_100829174 173Ga0310916_117595942 174Ga0310913_102851562 175Ga0310910_102599211 176Ga0310910_107839611 177Ga0310909_100171706 178Ga0310909_112379092 179Ga0306922_101471301 180Ga0306922_101809493 181Ga0318556_100164864 182Ga0318575_105042761 183Ga0318533_102500933 184Ga0318505_101166771 185Ga0318504_100265351 186Ga0318504_103036061 187Ga0318553_105015682 188Ga0306924_101592661 189Ga0306924_102512941 190Ga0306924_103738941 191Ga0306924_104182951 192Ga0306924_107103101 193Ga0318577_100685191 194Ga0311301_105719213 195Ga0307470_118051862 196Ga0307471_1007144642 197Ga0306920_1002383396 198Ga0306920_1006151355 199Ga0306920_1009004311 200Ga0306920_1016365751 201Ga0310914_102919671 202Ga0310914_114460442
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64 1AF_2010_repII_A100DRAFT_10251732 2Ga0070674_1004810382 3Ga0066704_107399762 4Ga0075428_1025712001 5Ga0182039_109865662 6Ga0307312_107321752 7Ga0306921_106927161
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40 1Ga0182039_100350061 2Ga0070711_1017978822 3Ga0070672_1009774382 4Ga0182040_102369931 5Ga0184635_102325211 6Ga0184625_101418343 7Ga0179589_100862411 8Ga0307312_107321752 9Ga0310887_104325731 10Ga0306917_103105821 11Ga0318501_101986791 12Ga0318537_100442041 13Ga0306923_110897171 14Ga0306923_115374361 15Ga0306921_105568921 16Ga0318553_105015682 17Ga0306924_101592661 18Ga0318577_100685191
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.13
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.13
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Pfam ID	Name	% Frequency in 202 Family Scaffolds
PF04392	ABC_sub_bind	80.69
PF02371	Transposase_20	2.48
PF03401	TctC	0.99
PF08240	ADH_N	0.99
PF13602	ADH_zinc_N_2	0.99
PF02515	CoA_transf_3	0.50
PF16864	Dimerisation2	0.50
PF05362	Lon_C	0.50
PF11799	IMS_C	0.50
PF14534	DUF4440	0.50

COG ID	Name	Functional Category	% Frequency in 202 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	80.69
COG3547	Transposase	Mobilome: prophages, transposons [X]	2.48
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.99
COG0466	ATP-dependent Lon protease, bacterial type	Posttranslational modification, protein turnover, chaperones [O]	0.50
COG1067	Predicted ATP-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	0.50
COG1750	Predicted archaeal serine protease, S18 family	General function prediction only [R]	0.50
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.50
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.50
COG3480	Predicted secreted protein YlbL, contains PDZ domain	Signal transduction mechanisms [T]	0.50

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.12 %
Unclassified	root	N/A	11.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.12 %
Unclassified	root	N/A	11.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.12 %
Unclassified	root	N/A	11.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	64.36 %
Unclassified	root	N/A	11.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	58.91 %
Unclassified	root	N/A	11.88 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.50 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.50 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.50 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	29.21 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.50 %
Unclassified	root	N/A	11.88 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	4.95 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.95 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	17.33 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.50 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.50 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.50 %
Unclassified	root	N/A	11.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.95 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	16.34 %
Enhydrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Enhydrobacter	0.50 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.50 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.50 %
Unclassified	root	N/A	11.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.95 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2.48 %
Bradyrhizobium tropiciagri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	1.49 %
Enhydrobacter aerosaccus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Enhydrobacter → Enhydrobacter aerosaccus	0.50 %
Microvirga tunisiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga tunisiensis	0.50 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.50 %
Unclassified	root	N/A	11.88 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.50 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.95 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2.48 %
Bradyrhizobium sp. Gha	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Gha	0.50 %
Bradyrhizobium tropiciagri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	1.49 %
Enhydrobacter aerosaccus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Enhydrobacter → Enhydrobacter aerosaccus	0.50 %
Microvirga tunisiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga tunisiensis	0.50 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.50 %
Unclassified	root	N/A	11.88 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000655\|AF_2010_repII_A100DRAFT_1025173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1112	Open in IMG/M
3300005332\|Ga0066388_108061304	Not Available	526	Open in IMG/M
3300005339\|Ga0070660_101453623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	583	Open in IMG/M
3300005439\|Ga0070711_101797882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	538	Open in IMG/M
3300005445\|Ga0070708_101339029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	668	Open in IMG/M
3300005557\|Ga0066704_10739976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	616	Open in IMG/M
3300005713\|Ga0066905_100197826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1499	Open in IMG/M
3300005713\|Ga0066905_100394724	Not Available	1120	Open in IMG/M
3300005764\|Ga0066903_100678939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1809	Open in IMG/M
3300005764\|Ga0066903_101600536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1235	Open in IMG/M

Showing 1 to 10 of 198 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.04%
Host-Associated	Host-Associated	3.96%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	4.95%
Plants	Host-Associated → Plants	3.96%
Terrestrial	Environmental → Terrestrial	91.09%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	0.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.99%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.97%
Sediment	Environmental → Aquatic → Sediment	4.46%
Soil	Environmental → Terrestrial → Soil	91.09%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.99%
Loam	Environmental → Terrestrial → Soil → Loam	7.43%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.49%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.49%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.47%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	70.30%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.49%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.99%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.50%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.47%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.99%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.47%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.50%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.50%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.50%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.49%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.50%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M

Showing 1 to 10 of 117 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A100DRAFT_10251732	3300000655	Forest Soil	MSNCVVGSGGSRLPCSTIAEHSVEGCDHFSHDGDDDDLGFFVG
Ga0066388_1080613041	3300005332	Tropical Forest Soil	MGMSNCVVGSGGSWLPCSTIAEHSVEGSDHFSHDGDDDDLG
Ga0070660_1014536231	3300005339	Corn Rhizosphere	MSNCVVGSGGSRLPCSTIAKHSVEGCDHFSHDGDDDDLGF
Ga0070674_1004810382	3300005356	Miscanthus Rhizosphere	MSNCVVGSGRFRLPFNIVAEHGVEGCDHLSHDRNDDDLGL
Ga0070711_1017978822	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSNCVVGSGGFELPCSIIAEHGVEGSDHFSHDGDDDDLGFLVGVGETI
Ga0070708_1013390291	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSNCVVGSGGLRLPCSIIAKHSVEGCDHFSHDGDDDDLGFFVGVGE
Ga0070672_1009774382	3300005543	Miscanthus Rhizosphere	MSNCVVGSGRFRLPFNIVAEHGVEGCDHLSHDRNDDDLGLL
Ga0066704_107399762	3300005557	Soil	MSNCVVGSGGSRLPRGIIAEHSVEGSDHFSHDGDD
Ga0066905_1001978261	3300005713	Tropical Forest Soil	MSNCVVGSGGSWLPCSTIAEHRVEGCDHFSHDGDD
Ga0066905_1003947241	3300005713	Tropical Forest Soil	MSNCVVGSGGSWLPCSTIAEHSVEGCDHFSHDGDDDDLG
Ga0066903_1006789391	3300005764	Tropical Forest Soil	MSNCVVGSGGSRLPCSAIAEHSVEGCEHFSHDGHDDDLG
Ga0066903_1016005361	3300005764	Tropical Forest Soil	MSNCVVGSGRSRLPCSTIAEHSVEGCDHFSHDGDDDDLGF
Ga0066903_1021080652	3300005764	Tropical Forest Soil	MSNCVVGSGGSLLPCSTIAEHSVEGCDHFSHDGDDDDLGFLVGGG
Ga0066903_1081803831	3300005764	Tropical Forest Soil	MSNCVVGSGGSWPPCSTIAEHSVEGCDHFSHDGDDDDLG
Ga0070715_100743533	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MSNCVVGSVGLRLPHSIIAEHSVEGSDHFSHDGDD
Ga0070716_1001772241	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VSNCVVGSVGLRLPHSIIAEHSVEGSDHFSHDGDDNDLGF
Ga0074055_100050813	3300006573	Soil	MSNCVVGSGGLRLPCSIIAEHSVEGCDHFSHDGDDDDLGFL
Ga0074062_128902652	3300006606	Soil	MSNCVVGSGGLRLPCSIIAEHSVEGCDHFSHDGDDDDLG
Ga0075428_1025712001	3300006844	Populus Rhizosphere	MSNCVVGSDGLRLPHSIIAEHSVEGSDHFSHDGDDNDLGFLVGVGKTVGE
Ga0075431_1000448551	3300006847	Populus Rhizosphere	MTPRIQFLGSNCVVGSGGSRLPCSTIAEHSVESCDHFSHDGDDDDLGFF
Ga0068865_1010044111	3300006881	Miscanthus Rhizosphere	MSNCVVGSGGFELPCSIIAEHSVEGCDHFSHDGDDDDLGF
Ga0126376_102140083	3300010359	Tropical Forest Soil	VSNCVVGSGGSWLPCSTIAEHSVEGCDHFSHDGDDD
Ga0182036_107164461	3300016270	Soil	MSNCVVGSDGSRLPCSTIAEHSVEGCDHFSHDGHDDDLGFFVGG
Ga0182036_117438332	3300016270	Soil	MSNCVVGSGGSRLPYSIIAEHSVEGCDHFSHDGDDDDLG
Ga0182041_103400402	3300016294	Soil	MSNCVVGSGGLRLPCSIIAEHSVESCDHFSHDGDDDDLGFF
Ga0182041_106656731	3300016294	Soil	MSNCVVGSDGSQLPCSIIAEHSVEGCDHFSHDGDDDDLG
Ga0182041_107820201	3300016294	Soil	MSNCVVGSGGSWLPCSIIAEHSVEGCDHFSHDGDDD
Ga0182033_103222702	3300016319	Soil	MSNCVVGSGGSRLPCSTIAEHSVEGCDHFSHDGDDDDLGFFVGGG
Ga0182033_106386481	3300016319	Soil	MSNCVVGSGGLRPPYSIIAEHSVEGCDHFSHDGDDDDLG
Ga0182033_113072021	3300016319	Soil	VSNCVIGSGGSRLPCSTIAEHSVEGCDHFSHDGDDDDLGFFVSGGEA
Ga0182033_119126781	3300016319	Soil	MSNCVVGSGGSRLPCSTIAEHGVEGCDHFSHDGDDDDLGFF
Ga0182033_119612892	3300016319	Soil	MSNCVVGSGRLRLPCRIIAEHSVEGCDHFSHHGHDDDLGFFVGGG
Ga0182032_103877321	3300016357	Soil	MSNCVVGSGGSRPPYSIIAEHSVEGCDHFSHDGDDDDLGFF
Ga0182034_102132301	3300016371	Soil	VSNCVVGSGGSRLPCGAIAEHSVEGCDHFSHDGDDDDLG
Ga0182034_112915882	3300016371	Soil	MSNCVVGSGGSWLPCSIIAEHSVEGCDHFSHDGDDDDLGFFVGGGEA
Ga0182040_101523441	3300016387	Soil	VSNCVVGSGGSRLPYSIIAEHSVEGCDHFSHDGDDDDLGFF
Ga0182040_102369931	3300016387	Soil	MSNCVVGSGGSWLPCSTIAEHSVEGCNHFLHDGDDDDLGFF
Ga0182040_107942121	3300016387	Soil	MSNCVVGSGGSRLPCSAIAEHSVEGCEHFSHDGHDDDLGF
Ga0182037_103305274	3300016404	Soil	MSNCVVGSGGSRLPCSAIAEHSVEGCEHFSHDGHDDD
Ga0182037_103738212	3300016404	Soil	MSNCVVRSGGLRLPCSIIAEHSVEGCDHFSHDGDDDDLGFFVGVGEA
Ga0182039_100350061	3300016422	Soil	MSNCVVGSGGSRLPCSIIAEHSVEGCDHFSHDGDDDDLGF
Ga0182039_109865662	3300016422	Soil	MTPRIQFLGSNCVVGSGGLRLPYSIIAEHSVEGCDHFSHDGDDDDLGFFV
Ga0182038_100906781	3300016445	Soil	MSNCVVGSGGSRLPCSTIAEHGVEGCDHFSHDGDDDDFGFFVG
Ga0182038_103370291	3300016445	Soil	VSNCVVGSGGSWLPCSTIAEHSVEGCDHFSHDGDDDDL
Ga0184611_11393732	3300018067	Groundwater Sediment	MSNCVVGSGGFRLPFNIVAEHGVEGCDHLSHDRNDDD
Ga0184635_100630171	3300018072	Groundwater Sediment	MSNCVVGSGGLGLPCSIIAEHSVEGCDHFSHDGDDDDFG
Ga0184635_102325211	3300018072	Groundwater Sediment	MSNCVVGSGGSRLPRGIIAEHGVEGSDHFSHDGDDDDLGF
Ga0184625_101418343	3300018081	Groundwater Sediment	MSNCVVGSGGLGLPCSIIAEHGVEGCDHFSHDGDDDDFGF
Ga0184625_101500401	3300018081	Groundwater Sediment	MSNCVVGSGGLGLPCSIIAEHSVEGCDHFSHDGDD
Ga0184625_104615092	3300018081	Groundwater Sediment	MSNCVVGSGGLRLPCSIIAEHSVEGCYHFSHDGDDD
Ga0184628_103530452	3300018083	Groundwater Sediment	VSNCVVGSGGFRLPFNIVAEHDVEGCDHLSHDRNDDD
Ga0193707_10893222	3300019881	Soil	MSNCVVGSVGLRLPRSIIAEHSVEGSDHFSHDGDDN
Ga0193729_10709504	3300019887	Soil	MSNCVVGSVGLRLPGSIIAEHSVEGSDHFSHDGDDD
Ga0193696_10569552	3300020016	Soil	MSNCVVGSVGLRLPGSIIAEHSVEGSDHFSHDGDDDD
Ga0193696_11743371	3300020016	Soil	MSNCVVGSGGSQLPRGIIAEHGVEGSDHFSHDGDD
Ga0210378_102997102	3300021073	Groundwater Sediment	MSNCVVGSGGLRLPCSIIAEHSVEGCDHFSHDGDDDDFG
Ga0210406_102187153	3300021168	Soil	MSNCVVGSVGLRLPRSIIAEHSVEGSDHFSHDGDD
Ga0210387_112351791	3300021405	Soil	MSNCVVGSGGSRLPRGIIAEHSVENSDHFSHDGDDD
Ga0126371_101073311	3300021560	Tropical Forest Soil	VSNCVVGSGGSWLPCSTIAEHSVEGCDHFSHDGDDDDLGF
Ga0126371_106324441	3300021560	Tropical Forest Soil	MSNCVVGSGGSWLPCSTIAEHSVEGCDHFSHDGDD
Ga0222623_102211932	3300022694	Groundwater Sediment	MSNCVVGSGGLRLPCSIIAEHSVEGCYHFSHDGNDDDLGFL
Ga0222622_103248891	3300022756	Groundwater Sediment	MSNCVVGSVGMRLPGSIIAEHSVEGSDHFSHDGDDDDLG
Ga0179589_100862411	3300024288	Vadose Zone Soil	MSNCVVGSVGLRLPRSIIAEHSVEGSDHFSHDGDDNDLGFLVGVGKTV
Ga0207684_109806853	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSNCVVGSGESRLPCSTIAEHRVEGCDHFSHDGDDDDLGFFVGVGE
Ga0207684_116693591	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSNCVVGLGGLRLPCSIIAEHSVESCDHFSHDGDDDDLGFFV
Ga0207693_107030422	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSNCVVRSGGLRLPCSIIAKHSVEGCDHFSHDGDDDDLG
Ga0207712_111402471	3300025961	Switchgrass Rhizosphere	MSNCVVGSVGLRLPHSIIAEHSVEGSDHFSHDGDDDDLG
Ga0207639_116794611	3300026041	Corn Rhizosphere	MSNCVVGSGGFELPCSIIAEHSVEGCDHFSHDGDDDDLGFLVG
Ga0209465_102399362	3300027874	Tropical Forest Soil	MSNCVVGSGGLRLPCSIIAEHSVESCDHFSHDGDDDDLGFFV
Ga0307285_100933601	3300028712	Soil	VSNCVVGSGGFELPCSIIAEHSVEGCDHFSHDGDDDDLGF
Ga0307297_100677031	3300028754	Soil	MSNCVVGSVGLRLPGSIIAEHGVEGSDHFSHDGDD
Ga0307280_100669803	3300028768	Soil	MSNCVVGSVGMRLPGSIIAEHSVEGSDHFSHDGDDD
Ga0307280_100831742	3300028768	Soil	MSNCVVGSGGSRLPRGIIAEHGVEGSDHFSHDGDDD
Ga0307288_100848352	3300028778	Soil	MSNCVVGSVGMRLPGSIIAEHSVEGSDHFSHDGDDDDLGFLVGVGK
Ga0307323_100569351	3300028787	Soil	MSNCVVGSGGSRLPRGIIAEHSVEGSDHFSHDGDNDDLGFLVGVG
Ga0307287_101513611	3300028796	Soil	MSNCVVGSGGLGLPCSIIAEHSVEGCDHFSHDGDDDDFGFL
Ga0307296_101213071	3300028819	Soil	MSNCVVGSVGLRLPGSIIAEHSVEGSDHFSHDGDDDDLGF
Ga0307296_105519991	3300028819	Soil	MSNCVVGSVGLRLPGSIIAEHSVEGSDHFSRDGDDDDLGFFVGTGEA
Ga0307312_107321752	3300028828	Soil	VSNCVVGSGGFELPCSIIAEHSVDGCDHFSHDGDDDWG
Ga0307289_100804701	3300028875	Soil	MSNCVVGSVGLRLPGSIIAEHSVEGSDHFSHDGDDDDLG
Ga0307286_100227281	3300028876	Soil	MSNCVVGSVGMRLPGSIIAEHSVEGSDHFSHDGDD
Ga0307286_100249631	3300028876	Soil	MSNCVVGSGGFELPCSVIAEHSVEGCDHFSHDGDDD
Ga0307304_101223781	3300028885	Soil	MSNCVVGSVGLRLPRSIIAEHSVEGSDHFSHDGDDDDLGFLVGVGKTI
Ga0170820_129341741	3300031446	Forest Soil	MSNCVVGSVGLRLPRSIIAEHSVEGSDHFSHDGDDDDLGFLVG
Ga0318516_100242131	3300031543	Soil	MSNCVVGSGGSWLPCSTIAEHSVEGCDHFSHDGDDDDLGFFV
Ga0318516_101099461	3300031543	Soil	MSNCVVGSDGSRLPCSIIAEHSVEGCDHFSHDGDDDD
Ga0318534_100266454	3300031544	Soil	MSNCVVGSDGSRLPCSIIAEHSVEGCDHFSHDGDDDDLGFFV
Ga0318541_100238041	3300031545	Soil	VSNCVVGSGGSWLPCSTIAEHSVEGCDHFSHDGDDDD
Ga0318541_100253941	3300031545	Soil	MSNCVVGSGGSRLPCSTIAEHSVEGCDHFSHDGDDD
Ga0318541_102252292	3300031545	Soil	MSNCVVGSGGSRLPCSTIAEHSVEGCDHFSHDGDDDDLGF
Ga0318538_100411641	3300031546	Soil	MSNCVVGSGGSRLPCSTIAEHGVEGCDHFSHDGDDDDLGF
Ga0318538_100895231	3300031546	Soil	MSNCVVGSGGSRLPYSIIAEHSVEGCDHFSHDGDDDDLGFF
Ga0310887_104325731	3300031547	Soil	MSNCVVGSGGFELPCSVIVEHSVECCDHFSHDGDDDDLGF
Ga0318571_100937481	3300031549	Soil	MSNCVVGSGGSRLPCSTIAEHSVEGCDHFSHDGHDDD
Ga0318528_102906642	3300031561	Soil	MSNCVVGSGGSWLPCSTIAEHSVEGCDHFSHDGDDDDL
Ga0318528_106624461	3300031561	Soil	MSNCVVGSDGSQLPCSIIAEHSVEGCDHFSHDGDDDDLGFF
Ga0318515_100544631	3300031572	Soil	VSNCVVGSGGSWLPCSIIAEHSVEGCDHFSHDGDDDDLGFFVGG
Ga0318515_103611121	3300031572	Soil	MSNCVVGSGGLRPPYSIIAEHSVEGCDHFSHDGDD
Ga0310915_100609271	3300031573	Soil	MSNCVVGSGGSRLPYSIIAEHSVEGCDHFSHDGDDDDLGF
Ga0310915_101107075	3300031573	Soil	MSNCVVRSGGLRLPCSIIAKHSVEGCDHFSHDGDDD
Ga0310915_101432491	3300031573	Soil	MSNCVVGSGGSRLPYSIIAEHSVEGCDHFSHDGDD
Ga0310915_101988653	3300031573	Soil	MSNCVVGSGGSRLPRSAIAEHSVEGCEHFSHDGHDDDL
Ga0310915_102403321	3300031573	Soil	MSNCVVRSGGLRLPCSIIAKHSVEGCDHFSHDGDDDDLGFF
Ga0310915_104812422	3300031573	Soil	MSNCVVGSGGLRLPYSIIAEHSVEGRDHFSHDGDDDDLGFFVGVGEAI
Ga0318542_101778662	3300031668	Soil	MSNCVVGSDGSRLPCSIIAEHSVEGCDHFSHDGDDDDL
Ga0318561_100942883	3300031679	Soil	MSNCVVGSGGLRPPYSIIAEHSVEGCDHFSHDGDDD
Ga0318561_102466181	3300031679	Soil	MSNCVVGSDGSRLPCSTIAEHSVEGCDHFSHDGHDDDLGFFVGGDEA
Ga0318560_100213821	3300031682	Soil	VSNCVVGSGGSWLPCSTIAEHSVEGGDHFSHDGDYDD
Ga0306917_103105821	3300031719	Soil	MSNCVVRSGGLRLPCSVIAKHSVEGCDHFSHDGDDDDLGF
Ga0306917_103354993	3300031719	Soil	MSNCVVGSGGSRLPCSIIAEHSVEGCDHFSHDGHDDD
Ga0318493_108413122	3300031723	Soil	MSNCVVGSGGLRPPYSIIAEHSVEGCDHFSHDGDDDD
Ga0318501_100617811	3300031736	Soil	MSNCVVGSGGSRLPYSIIAEHSVEGCDHFSHDGDDD
Ga0318501_101986791	3300031736	Soil	VSNCVVGSGRSRLPCSIIAEHSVEGCDHFSHHGHDDDLGF
Ga0306918_100544295	3300031744	Soil	VSNCVVGSGGSRLPYSIIAEHSVEGCDHFSHDGDDD
Ga0306918_102266182	3300031744	Soil	MSNCVVGSGGSRLPCSTIAEHSVEGCDHFSHDGDDDDLGFF
Ga0306918_102937792	3300031744	Soil	VSNCVVGSGGSRLPCGAIAEHSVEGCDHFSHDGDDDDL
Ga0306918_106604441	3300031744	Soil	MSNCVVGSGGLRPPYSIIAEHSVEGCDHFSHDGDDDDLGF
Ga0318502_108342391	3300031747	Soil	MSNCVVGSGGSRLPCSAIAEHSVEGCEHFSHDGDDDD
Ga0318492_102791952	3300031748	Soil	MSNCVVGSGGSRLPCSAIAEHSVEGCEHFSHDGHDDDLGFF
Ga0318537_100442041	3300031763	Soil	MTTRIQFLGSNCVVGSGGLRLPCSTIAEHSVEGCDHFSHDGHDDDLGFFVG
Ga0318537_100532404	3300031763	Soil	MSNCVVGSGGLRPPYSIIAEHSVEGCDHFSHDGDDDDL
Ga0318509_100223886	3300031768	Soil	VSNCVVGSGGSWLPCSTIAEHSVEGCDHFSHDGDDDDLGFF
Ga0318509_105022002	3300031768	Soil	MSNCVVGSGGSWLPCSTIAEHSVEGCDHFSHDGDDD
Ga0318521_105281162	3300031770	Soil	MSNCVVGSGGSRLPYSIIAEHSVEGCDHFSHDGDDDDL
Ga0318521_108614301	3300031770	Soil	MSNCVVGSGGSRLPCSAIAEHSVEGCEHFSHDGHDDDL
Ga0318546_110190102	3300031771	Soil	VSNCVVGSGGSRLPCSTIAEHSVEGCDHFSHDGDDDDH
Ga0318543_100076161	3300031777	Soil	MTTRIQFLGSNCVVGSGGSRLPCSTIAEHSVEGCDHFSHDGHDDD
Ga0318543_101265453	3300031777	Soil	MSNCVVGSGGSRLPYSIIAEQSVEGCDHFSHDGDD
Ga0318552_105329681	3300031782	Soil	MSNCVVGSGGSRLPCSTIAEHSVEGCDHFSHDGHDDDL
Ga0318529_104677332	3300031792	Soil	MSNCVVGSGGLRLPYSIIAEHSVEGCDHFSHDGDDD
Ga0318529_105670511	3300031792	Soil	MSNCVVGSGGSRLPRSAIAEHSVEGCEHFSHDGHDD
Ga0318503_100280101	3300031794	Soil	MTTRIQFLGSNCVVGSGGSRLPCSTIAEHGVEGCDHFSHDGDDDD
Ga0318503_100659232	3300031794	Soil	MSNCVVGSGGSRLPCSTIAEHRGEGCDHFSHDGHDDD
Ga0318576_102893001	3300031796	Soil	MSNCVVGSGGSRLPCSTIAEHSVEGCDHFSHDGDDDD
Ga0318550_101953411	3300031797	Soil	MSNCVVGSGGLRLPYSIIAEHSVEGCDHFSHDGDDDD
Ga0318523_106212591	3300031798	Soil	VSNCVVGSDGSRLPCSIIAEHSVEGCDHFSHDGDDDD
Ga0318565_101620972	3300031799	Soil	MSNCVVGSGGSRLPCSTIAEHGVEGCDHFSHDGDD
Ga0318497_105900611	3300031805	Soil	MSNCVVGSGGSRLPYSSIAEHSGEGCDHFSHDGDDDD
Ga0318568_106061571	3300031819	Soil	MSNCVVGSGGSWLPCSTIAEHSVEGCNHFSHDGDDDDLGFF
Ga0318567_108131711	3300031821	Soil	MSNCVVGSGGSWLPCSTIAEHSVEGCDHFSHDGHD
Ga0318499_101558242	3300031832	Soil	MSNCVVGSDGSRLPCSTIAEHSVEGCDHFSHDGHDDDLGF
Ga0310917_101625942	3300031833	Soil	MSNCVVGSDGSRLPCSTIAEHSVEGCDHFSHDGHDDDLG
Ga0310917_110967412	3300031833	Soil	MSNCVVGSGGSRLPCSTIAEHRVEGGDHFSHDGDDDDLGFF
Ga0306919_100217941	3300031879	Soil	MSNCVVGSGGSRLPCSTIAEHSVEGCDHFSHDGHD
Ga0306919_100923071	3300031879	Soil	MSNCVVGSGGSWLPCSTIAEHSVEGCDHFSHDGDDDDLGFF
Ga0306919_115158092	3300031879	Soil	MSNCVVGSGGLRPPYSIIAEHSVEGCDHFSHDGDDDDLGFF
Ga0306925_100768135	3300031890	Soil	VSNCVVGSGGSRLPYSIIAEHSVEGCDHFSHDGDDDDLGFFV
Ga0306925_101570911	3300031890	Soil	VSNCVVGSGGSRLPYSIIAEHSVEGCDHFSHDGDD
Ga0306925_101791043	3300031890	Soil	MSNCVVRSGGLRLPCSIIAKHSVEGCDHFSHDGDDDDLGFFVGVGE
Ga0306925_102006311	3300031890	Soil	MSNCVVGSGGLRLPYSIIAEHSVEGRDHFSHDGDD
Ga0306925_103291604	3300031890	Soil	VSNCVVGSGGSRLPCSTIAEHGVEGCDHFSHDGDD
Ga0306925_105314432	3300031890	Soil	MSNCAVRSGGLRLPCSIIAKHSVEGCDHFSHDGDDDDLGFFVGVGE
Ga0306925_114847122	3300031890	Soil	MSNCVVGSGGSRLPCSTIAEHRVEGCNHFSHDGDD
Ga0318536_100816703	3300031893	Soil	MSNCVVGSGGSRLPYSIIAEHSVEGCDHFSHDGDDDD
Ga0306923_102280651	3300031910	Soil	MSNCVVRSGGLRLPCSIIAKHSVEGCDHFSHDGDDDDLGF
Ga0306923_104567902	3300031910	Soil	MSNCVVGSDGSRLPCSTIAEHSVEGCDHFSHDGHDDDLGFFV
Ga0306923_106366422	3300031910	Soil	MSNCVVRSGGLRLPCSIIAKHSVEGCDHFSHDGDDDD
Ga0306923_106579031	3300031910	Soil	MSNCVVGSGGSRLPCSAIAEHSVEGCEHFSHDGHD
Ga0306923_106813523	3300031910	Soil	MSNCVVGSGGSRLPCSAIAEHSVEGCDHFSHDGDDD
Ga0306923_110897171	3300031910	Soil	MSNCVVGSGGSRLPCSTIAKHSVEGCDHFSHDGHDDDPAGCVVTH
Ga0306923_114439272	3300031910	Soil	MSNCVVGSGGSRLPCSAIAEHSVEGCEHFSHDGDDDDLG
Ga0306923_115374361	3300031910	Soil	VSNCVVGSGGLRPPYSIIAEHSVEGCDHFSHDGDDDDLGFFV
Ga0306923_119121471	3300031910	Soil	MSNCVVGSGGSRLPCSTIAEHRVEGCNHFSHDGDDDDLGFFVGVGE
Ga0306921_103402381	3300031912	Soil	MSNCVVGSDGSQLPCSIIAEHSVEGCDHFSHDGDDDDLGFFVGG
Ga0306921_105299961	3300031912	Soil	MSNCVVGSGGSWPPCSTIAEHSVEGCDHFSHDGDDDD
Ga0306921_105568921	3300031912	Soil	VSNCAVGSGGSRLPCGAIAEHSVEGCDHFSHDGDDDHLGFFVGG
Ga0306921_106927161	3300031912	Soil	MSGRVSNCVVGSGGSWLPCSTIAEHSVEGCDHFSHDGDD
Ga0306921_127333171	3300031912	Soil	MSNCVVGSGGSRLPCSAIAEHSVEGCEHFSHDGHDDDLGFFVGG
Ga0310912_100961931	3300031941	Soil	MSNCVVGSGGSRLPCSTIAEHSVEGCDHFSHDGDDDDLGFFV
Ga0310912_108159761	3300031941	Soil	MSNCVVGSGGLRLPYSIIAEHSVEGRDHFSHDGDDDDLGFF
Ga0310912_110109661	3300031941	Soil	MSNCVVGSDGSRLPCSTIAEHSVEGCDHFSHDGDDDDLGFF
Ga0310916_100829174	3300031942	Soil	MSNCVVGSGGSRLPCSTIAEHSVEGCDHFSHDGDDDDLGFFVGGGE
Ga0310916_117595942	3300031942	Soil	MSNCVVRSGGLRLPCSIIAEHSVEGCDHFSHDGDDDDLGF
Ga0310913_102851562	3300031945	Soil	MSNCVVGSGGSWLPCSTIAEHGVEGCDHFSHDGDDDDLGFF
Ga0310910_102599211	3300031946	Soil	MSNCVVGSGGSRLPCSAIAEHSVEGCEHFSHDGDDGDLGFFVG
Ga0310910_107839611	3300031946	Soil	MSNCVVGSGGSWLPCSIIAEHSVEGCDHFSHDGDDDDLGFF
Ga0310909_100171706	3300031947	Soil	MSNCVVGSGGSRLPCSAIAEHSVEGCEHFSHDGDDDDLGF
Ga0310909_112379092	3300031947	Soil	MSNCVVGSGGSRLPCSTIAEHRVEGCDHFSHDGDDDDLG
Ga0306922_101471301	3300032001	Soil	MSNCVVRSGGLRLPCSIIAKHSVESCDHFSHDGDD
Ga0306922_101809493	3300032001	Soil	MSNCVVRSGGLRLPCSIIAKHSVEGCDHFSHDGDD
Ga0318556_100164864	3300032043	Soil	MSNCVVGSDGSRLPCSIIAEHSVEGCDHFSHDGDD
Ga0318575_105042761	3300032055	Soil	MYSRLTMKRVSNCVVGSGGSWLPCSTIAEHSVEGCDHFSHDGDDDD
Ga0318533_102500933	3300032059	Soil	VSNCVVGSGGSRLPCSTIAEHGVEGCDHFSHDGDDD
Ga0318505_101166771	3300032060	Soil	MSNCVVGSGGSRLPCSIIAEHSVEGCDHFSHDGHDDDL
Ga0318504_100265351	3300032063	Soil	VSNCVVGSGGSWLPCSTIAEHSVEGCDHFSHDGDDDDLG
Ga0318504_103036061	3300032063	Soil	MSNCVVGSGGLRLPCSAIAEHSVEGCDHFSHDGDDDDLG
Ga0318553_105015682	3300032068	Soil	MSNCVVGSGGSRLPRSAIAEHSVEGCEHFSHDGHDDDLGFFVGGDEA
Ga0306924_101592661	3300032076	Soil	VSNCVVGSGGSWLPCSTIAEHSVEGCDQFSHDGDDDDLGFF
Ga0306924_102512941	3300032076	Soil	MSNCVVGSGGSRLPCSTIAEHSVEGCDHFSHDGDD
Ga0306924_103738941	3300032076	Soil	MSNCVVGSGGSRLPRSAIAEHSVEGCEHFSHDGHDDDLGFFVGGD
Ga0306924_104182951	3300032076	Soil	MSNCVVGSDGSRLPCSTIAEHSVEGCDHFSHDGHDDDLGFFVGGD
Ga0306924_107103101	3300032076	Soil	MSNCAVRSGGLRLPCSIIAKHSVEGCDHFSHDGDDDD
Ga0318577_100685191	3300032091	Soil	VSNCVVGSGGLRLPCTIIAEHSVEGCEHFSHDGHDD
Ga0311301_105719213	3300032160	Peatlands Soil	MSNCVVGSGGFRLPINIVAEHGVEGCDHLSYDRND
Ga0307470_118051862	3300032174	Hardwood Forest Soil	MSNCVVGSGVSWLPCSTIAEHSVEGCDHFSHDGDDDDLGF
Ga0307471_1007144642	3300032180	Hardwood Forest Soil	MSNCVVGSGGLRLPCSIIAKHSVEGCDHFSHDGDDDDLG
Ga0306920_1002383396	3300032261	Soil	MSNCVVGSDGSQLPCSIIAEHSVEGCDHFSHDGDDDDLGFFVGGGEA
Ga0306920_1006151355	3300032261	Soil	VSNCVVRSGGLRLPCSIIAKHSVEGCDHFSHDGDDDDLGF
Ga0306920_1009004311	3300032261	Soil	MSNCVVGSGGSRLPCSTIAEHGVEGCDHFSHDGDDDDLGFFV
Ga0306920_1016365751	3300032261	Soil	VSNCVVGSDGSRLPCSIIAEHSVEGCDHFSHDGDDDDLGFF
Ga0310914_102919671	3300033289	Soil	MSNCVVGSGGSRLPCSAIAEHSVEGCEHFSHDGDDDDLGFFV
Ga0310914_114460442	3300033289	Soil	MSNCVVGSGGSRLPCSAIAEHSVEGCDHFSHDGHDDDLGF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F025407

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences