NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F025138

Metagenome / Metatranscriptome Family F025138

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F025138
Family Type Metagenome / Metatranscriptome
Number of Sequences 203
Average Sequence Length 61 residues
Representative Sequence MARKPMAAAVVGSLLLVVCDDGSVFELDPNGAWVERAPVPGTPAAHADEIRRQEPRFD
Number of Associated Samples 144
Number of Associated Scaffolds 203

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 70.94 %
% of genes near scaffold ends (potentially truncated) 30.54 %
% of genes from short scaffolds (< 2000 bps) 87.19 %
Associated GOLD sequencing projects 124
AlphaFold2 3D model prediction Yes
3D model pTM-score0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (80.296 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(13.793 % of family members)
Environment Ontology (ENVO) Unclassified
(47.291 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(61.576 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 12.79%    β-sheet: 24.42%    Coil/Unstructured: 62.79%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.72
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
b.68.11.0: automated matchesd2vpja_2vpj0.60083
b.68.11.0: automated matchesd3ii7a_3ii70.59075
b.69.4.2: Cell cycle arrest protein BUB3d1yfqa11yfq0.58812
b.69.4.1: WD40-repeatd1nr0a21nr00.58297
b.69.14.1: Nucleoporin domaind1xksa_1xks0.57957

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 203 Family Scaffolds
PF02687FtsX 1.48
PF06441EHN 1.48
PF15902Sortilin-Vps10 1.48
PF12704MacB_PCD 1.48
PF01321Creatinase_N 0.99
PF00072Response_reg 0.49
PF13505OMP_b-brl 0.49
PF12773DZR 0.49
PF12867DinB_2 0.49
PF00069Pkinase 0.49

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 203 Family Scaffolds
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 1.97
COG05962-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase foldCoenzyme transport and metabolism [H] 1.48
COG0006Xaa-Pro aminopeptidaseAmino acid transport and metabolism [E] 0.99

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms80.30 %
UnclassifiedrootN/A19.70 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2140918013|NODE_7529_length_1600_cov_9.008750All Organisms → cellular organisms → Bacteria → Acidobacteria1632Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c0647839All Organisms → cellular organisms → Bacteria1355Open in IMG/M
3300000550|F24TB_12248113All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300000550|F24TB_13634259All Organisms → cellular organisms → Bacteria → FCB group595Open in IMG/M
3300000956|JGI10216J12902_114377980All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300003267|soilL1_10212941All Organisms → cellular organisms → Bacteria1192Open in IMG/M
3300003324|soilH2_10072547All Organisms → cellular organisms → Bacteria1495Open in IMG/M
3300003324|soilH2_10075546All Organisms → cellular organisms → Bacteria1980Open in IMG/M
3300004114|Ga0062593_100160705All Organisms → cellular organisms → Bacteria1722Open in IMG/M
3300004114|Ga0062593_100797491All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium939Open in IMG/M
3300004156|Ga0062589_100279638All Organisms → cellular organisms → Bacteria1274Open in IMG/M
3300004157|Ga0062590_100949501All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes811Open in IMG/M
3300004157|Ga0062590_102653158Not Available533Open in IMG/M
3300004463|Ga0063356_101795395All Organisms → cellular organisms → Bacteria → FCB group921Open in IMG/M
3300004480|Ga0062592_101688964All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300004643|Ga0062591_100690794All Organisms → cellular organisms → Bacteria → FCB group921Open in IMG/M
3300005093|Ga0062594_102532844Not Available564Open in IMG/M
3300005293|Ga0065715_11089214Not Available522Open in IMG/M
3300005294|Ga0065705_10395901All Organisms → cellular organisms → Bacteria887Open in IMG/M
3300005295|Ga0065707_10119027All Organisms → cellular organisms → Bacteria2170Open in IMG/M
3300005329|Ga0070683_101523244Not Available643Open in IMG/M
3300005331|Ga0070670_100156239All Organisms → cellular organisms → Bacteria1975Open in IMG/M
3300005331|Ga0070670_100194980All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1759Open in IMG/M
3300005331|Ga0070670_102080224All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300005333|Ga0070677_10453815Not Available686Open in IMG/M
3300005335|Ga0070666_10949618All Organisms → cellular organisms → Bacteria637Open in IMG/M
3300005339|Ga0070660_101180687All Organisms → cellular organisms → Bacteria649Open in IMG/M
3300005343|Ga0070687_101414319All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300005353|Ga0070669_101583576Not Available570Open in IMG/M
3300005355|Ga0070671_100069632All Organisms → cellular organisms → Bacteria2935Open in IMG/M
3300005356|Ga0070674_100173368All Organisms → cellular organisms → Bacteria1647Open in IMG/M
3300005356|Ga0070674_100185137All Organisms → cellular organisms → Bacteria1598Open in IMG/M
3300005367|Ga0070667_101511252Not Available631Open in IMG/M
3300005434|Ga0070709_10559115All Organisms → cellular organisms → Bacteria876Open in IMG/M
3300005444|Ga0070694_100846218Not Available752Open in IMG/M
3300005456|Ga0070678_100238930All Organisms → cellular organisms → Bacteria1518Open in IMG/M
3300005467|Ga0070706_100488012All Organisms → cellular organisms → Bacteria1146Open in IMG/M
3300005539|Ga0068853_101145045All Organisms → cellular organisms → Bacteria751Open in IMG/M
3300005548|Ga0070665_100037015All Organisms → cellular organisms → Bacteria4907Open in IMG/M
3300005548|Ga0070665_101311205Not Available734Open in IMG/M
3300005578|Ga0068854_102258120All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300005718|Ga0068866_10642040All Organisms → cellular organisms → Bacteria722Open in IMG/M
3300005719|Ga0068861_102145540Not Available559Open in IMG/M
3300005834|Ga0068851_10059804All Organisms → cellular organisms → Bacteria1949Open in IMG/M
3300005840|Ga0068870_11172330All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300005841|Ga0068863_100588575All Organisms → cellular organisms → Bacteria1100Open in IMG/M
3300005841|Ga0068863_100596689All Organisms → cellular organisms → Bacteria1093Open in IMG/M
3300005841|Ga0068863_101837876Not Available616Open in IMG/M
3300005841|Ga0068863_102463362All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300005843|Ga0068860_100847699All Organisms → cellular organisms → Bacteria928Open in IMG/M
3300005843|Ga0068860_102486786All Organisms → cellular organisms → Bacteria537Open in IMG/M
3300005844|Ga0068862_100521861All Organisms → cellular organisms → Bacteria1130Open in IMG/M
3300005844|Ga0068862_100830799All Organisms → cellular organisms → Bacteria904Open in IMG/M
3300006049|Ga0075417_10444587All Organisms → cellular organisms → Bacteria646Open in IMG/M
3300006169|Ga0082029_1069717All Organisms → cellular organisms → Bacteria1242Open in IMG/M
3300006169|Ga0082029_1410687All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300006237|Ga0097621_100879173All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium834Open in IMG/M
3300006576|Ga0074047_11582965All Organisms → cellular organisms → Bacteria657Open in IMG/M
3300006755|Ga0079222_10895462Not Available743Open in IMG/M
3300006844|Ga0075428_100040907All Organisms → cellular organisms → Bacteria5098Open in IMG/M
3300006844|Ga0075428_100425374All Organisms → cellular organisms → Bacteria1423Open in IMG/M
3300006844|Ga0075428_100572681All Organisms → cellular organisms → Bacteria1207Open in IMG/M
3300006844|Ga0075428_102140557All Organisms → cellular organisms → Bacteria578Open in IMG/M
3300006845|Ga0075421_100000964All Organisms → cellular organisms → Bacteria32402Open in IMG/M
3300006845|Ga0075421_100034514All Organisms → cellular organisms → Bacteria6404Open in IMG/M
3300006845|Ga0075421_100061990All Organisms → cellular organisms → Bacteria4726Open in IMG/M
3300006845|Ga0075421_100758319All Organisms → cellular organisms → Bacteria1122Open in IMG/M
3300006845|Ga0075421_101085965All Organisms → cellular organisms → Bacteria900Open in IMG/M
3300006846|Ga0075430_101413099Not Available572Open in IMG/M
3300006854|Ga0075425_102380341Not Available588Open in IMG/M
3300006876|Ga0079217_10870702Not Available638Open in IMG/M
3300006881|Ga0068865_100450611All Organisms → cellular organisms → Bacteria1064Open in IMG/M
3300006881|Ga0068865_100451019All Organisms → cellular organisms → Bacteria1063Open in IMG/M
3300006894|Ga0079215_10358948All Organisms → cellular organisms → Bacteria838Open in IMG/M
3300006904|Ga0075424_100051287All Organisms → cellular organisms → Bacteria4312Open in IMG/M
3300006918|Ga0079216_10356226All Organisms → cellular organisms → Bacteria896Open in IMG/M
3300006918|Ga0079216_10959473Not Available654Open in IMG/M
3300006969|Ga0075419_10687121All Organisms → cellular organisms → Bacteria725Open in IMG/M
3300007004|Ga0079218_11505986All Organisms → cellular organisms → Bacteria729Open in IMG/M
3300007004|Ga0079218_12163507Not Available644Open in IMG/M
3300007004|Ga0079218_12415552All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300009094|Ga0111539_10397751All Organisms → cellular organisms → Bacteria1605Open in IMG/M
3300009094|Ga0111539_13412167Not Available511Open in IMG/M
3300009098|Ga0105245_10334121All Organisms → cellular organisms → Bacteria1496Open in IMG/M
3300009098|Ga0105245_11281315All Organisms → cellular organisms → Bacteria782Open in IMG/M
3300009100|Ga0075418_10012857All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes9298Open in IMG/M
3300009100|Ga0075418_10458845All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium1365Open in IMG/M
3300009147|Ga0114129_10759263All Organisms → cellular organisms → Bacteria1241Open in IMG/M
3300009174|Ga0105241_10915354All Organisms → cellular organisms → Bacteria815Open in IMG/M
3300009176|Ga0105242_10023995All Organisms → cellular organisms → Bacteria4813Open in IMG/M
3300009176|Ga0105242_12762222All Organisms → cellular organisms → Bacteria541Open in IMG/M
3300009177|Ga0105248_10216573All Organisms → cellular organisms → Bacteria2157Open in IMG/M
3300009553|Ga0105249_12714988All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300009789|Ga0126307_10636328All Organisms → cellular organisms → Bacteria861Open in IMG/M
3300009840|Ga0126313_10320054All Organisms → cellular organisms → Bacteria1216Open in IMG/M
3300009840|Ga0126313_11121779Not Available647Open in IMG/M
3300010037|Ga0126304_10168726All Organisms → cellular organisms → Bacteria1423Open in IMG/M
3300010040|Ga0126308_10892520Not Available619Open in IMG/M
3300010041|Ga0126312_10876726All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300010042|Ga0126314_10315346All Organisms → cellular organisms → Bacteria1118Open in IMG/M
3300010166|Ga0126306_11818287All Organisms → cellular organisms → Bacteria510Open in IMG/M
3300010373|Ga0134128_12884699All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300010397|Ga0134124_11655566All Organisms → cellular organisms → Bacteria671Open in IMG/M
3300010398|Ga0126383_12267306Not Available629Open in IMG/M
3300010400|Ga0134122_10634025All Organisms → cellular organisms → Bacteria993Open in IMG/M
3300010403|Ga0134123_13097909Not Available534Open in IMG/M
3300010403|Ga0134123_13603384Not Available502Open in IMG/M
3300011431|Ga0137438_1228960All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300012212|Ga0150985_103490918All Organisms → cellular organisms → Bacteria1401Open in IMG/M
3300012503|Ga0157313_1054726Not Available529Open in IMG/M
3300012509|Ga0157334_1072873All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300012957|Ga0164303_10214044All Organisms → cellular organisms → Bacteria1077Open in IMG/M
3300012961|Ga0164302_10047070All Organisms → cellular organisms → Bacteria2113Open in IMG/M
3300012971|Ga0126369_11484753All Organisms → cellular organisms → Bacteria768Open in IMG/M
3300012971|Ga0126369_13430995All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300012985|Ga0164308_10098405All Organisms → cellular organisms → Bacteria2049Open in IMG/M
3300012986|Ga0164304_10245054All Organisms → cellular organisms → Bacteria1198Open in IMG/M
3300012988|Ga0164306_10190832All Organisms → cellular organisms → Bacteria1431Open in IMG/M
3300013105|Ga0157369_10601429All Organisms → cellular organisms → Bacteria1135Open in IMG/M
3300013296|Ga0157374_10414008All Organisms → cellular organisms → Bacteria1346Open in IMG/M
3300013297|Ga0157378_10064732All Organisms → cellular organisms → Bacteria3271Open in IMG/M
3300013308|Ga0157375_11655478All Organisms → cellular organisms → Bacteria757Open in IMG/M
3300013308|Ga0157375_13715716Not Available507Open in IMG/M
3300014326|Ga0157380_12120444All Organisms → cellular organisms → Bacteria625Open in IMG/M
3300015371|Ga0132258_10204763Not Available4788Open in IMG/M
3300015371|Ga0132258_11318583All Organisms → cellular organisms → Bacteria1824Open in IMG/M
3300015371|Ga0132258_12094498All Organisms → cellular organisms → Bacteria1422Open in IMG/M
3300015372|Ga0132256_100406292All Organisms → cellular organisms → Bacteria1464Open in IMG/M
3300015372|Ga0132256_103751605All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300015374|Ga0132255_100033822All Organisms → cellular organisms → Bacteria6503Open in IMG/M
3300015374|Ga0132255_101095906All Organisms → cellular organisms → Bacteria1197Open in IMG/M
3300015374|Ga0132255_105627171All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300018469|Ga0190270_13070168Not Available528Open in IMG/M
3300018476|Ga0190274_10144773All Organisms → cellular organisms → Bacteria1993Open in IMG/M
3300018476|Ga0190274_11369346All Organisms → cellular organisms → Bacteria796Open in IMG/M
3300018481|Ga0190271_11020678All Organisms → cellular organisms → Bacteria951Open in IMG/M
3300021445|Ga0182009_10137901All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1149Open in IMG/M
3300022756|Ga0222622_10680581All Organisms → cellular organisms → Bacteria747Open in IMG/M
3300022886|Ga0247746_1193356All Organisms → cellular organisms → Bacteria532Open in IMG/M
3300025290|Ga0207673_1032462Not Available725Open in IMG/M
3300025321|Ga0207656_10451307All Organisms → cellular organisms → Bacteria650Open in IMG/M
3300025893|Ga0207682_10014224All Organisms → cellular organisms → Bacteria3100Open in IMG/M
3300025893|Ga0207682_10178859All Organisms → cellular organisms → Bacteria968Open in IMG/M
3300025899|Ga0207642_10070170All Organisms → cellular organisms → Bacteria1664Open in IMG/M
3300025899|Ga0207642_10701768All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300025901|Ga0207688_10033003All Organisms → cellular organisms → Bacteria2862Open in IMG/M
3300025903|Ga0207680_10687879All Organisms → cellular organisms → Bacteria733Open in IMG/M
3300025903|Ga0207680_10939192All Organisms → cellular organisms → Bacteria620Open in IMG/M
3300025903|Ga0207680_11041324Not Available586Open in IMG/M
3300025919|Ga0207657_10269365All Organisms → cellular organisms → Bacteria1354Open in IMG/M
3300025923|Ga0207681_11268872Not Available619Open in IMG/M
3300025925|Ga0207650_11778756Not Available521Open in IMG/M
3300025927|Ga0207687_10822588Not Available793Open in IMG/M
3300025931|Ga0207644_10158696All Organisms → cellular organisms → Bacteria1756Open in IMG/M
3300025941|Ga0207711_11145011Not Available719Open in IMG/M
3300025972|Ga0207668_12159853All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300026067|Ga0207678_11871236All Organisms → cellular organisms → Bacteria524Open in IMG/M
3300026075|Ga0207708_10343918All Organisms → cellular organisms → Bacteria1222Open in IMG/M
3300026088|Ga0207641_10507762All Organisms → cellular organisms → Bacteria1171Open in IMG/M
3300026088|Ga0207641_10676939All Organisms → cellular organisms → Bacteria1015Open in IMG/M
3300026089|Ga0207648_10042091All Organisms → cellular organisms → Bacteria4010Open in IMG/M
3300026121|Ga0207683_10180782All Organisms → cellular organisms → Bacteria1912Open in IMG/M
3300026121|Ga0207683_10411111All Organisms → cellular organisms → Bacteria1245Open in IMG/M
3300026142|Ga0207698_10324620All Organisms → cellular organisms → Bacteria1443Open in IMG/M
3300027873|Ga0209814_10262075All Organisms → cellular organisms → Bacteria750Open in IMG/M
3300027873|Ga0209814_10489885All Organisms → cellular organisms → Bacteria544Open in IMG/M
3300027880|Ga0209481_10160231All Organisms → cellular organisms → Bacteria1114Open in IMG/M
3300027886|Ga0209486_10907756Not Available585Open in IMG/M
3300027907|Ga0207428_10383086All Organisms → cellular organisms → Bacteria1031Open in IMG/M
3300027909|Ga0209382_10039573All Organisms → cellular organisms → Bacteria5651Open in IMG/M
3300027909|Ga0209382_10207710All Organisms → cellular organisms → Bacteria2241Open in IMG/M
3300027909|Ga0209382_10228308All Organisms → cellular organisms → Bacteria2122Open in IMG/M
3300027909|Ga0209382_10445867All Organisms → cellular organisms → Bacteria1434Open in IMG/M
3300027909|Ga0209382_10906001All Organisms → cellular organisms → Bacteria928Open in IMG/M
3300028379|Ga0268266_10249176All Organisms → cellular organisms → Bacteria1642Open in IMG/M
3300028379|Ga0268266_10647463All Organisms → cellular organisms → Bacteria1017Open in IMG/M
3300028380|Ga0268265_10782858All Organisms → cellular organisms → Bacteria928Open in IMG/M
3300028768|Ga0307280_10214171All Organisms → cellular organisms → Bacteria684Open in IMG/M
3300031548|Ga0307408_100003648All Organisms → cellular organisms → Bacteria10495Open in IMG/M
3300031548|Ga0307408_100716661All Organisms → cellular organisms → Bacteria901Open in IMG/M
3300031548|Ga0307408_101770865Not Available590Open in IMG/M
3300031716|Ga0310813_10573698Not Available995Open in IMG/M
3300031716|Ga0310813_11425947All Organisms → cellular organisms → Bacteria643Open in IMG/M
3300031720|Ga0307469_12497503Not Available505Open in IMG/M
3300031731|Ga0307405_10754859All Organisms → cellular organisms → Bacteria811Open in IMG/M
(restricted) 3300031825|Ga0255338_1000466All Organisms → cellular organisms → Bacteria131581Open in IMG/M
3300031847|Ga0310907_10359933All Organisms → cellular organisms → Bacteria748Open in IMG/M
3300031852|Ga0307410_10421168All Organisms → cellular organisms → Bacteria1083Open in IMG/M
3300031852|Ga0307410_10619967All Organisms → cellular organisms → Bacteria904Open in IMG/M
3300031852|Ga0307410_12000378All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300031901|Ga0307406_10213004All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1431Open in IMG/M
3300031938|Ga0308175_101037015All Organisms → cellular organisms → Bacteria907Open in IMG/M
3300031938|Ga0308175_101770477Not Available692Open in IMG/M
3300031939|Ga0308174_10150146All Organisms → cellular organisms → Bacteria1734Open in IMG/M
3300032002|Ga0307416_100277617All Organisms → cellular organisms → Bacteria1650Open in IMG/M
3300032075|Ga0310890_10029006All Organisms → cellular organisms → Bacteria2953Open in IMG/M
3300032122|Ga0310895_10173315All Organisms → cellular organisms → Bacteria950Open in IMG/M
3300032180|Ga0307471_101282328All Organisms → cellular organisms → Bacteria895Open in IMG/M
3300032205|Ga0307472_101910430Not Available592Open in IMG/M
3300033412|Ga0310810_10083216All Organisms → cellular organisms → Bacteria3850Open in IMG/M
3300033412|Ga0310810_10497006All Organisms → cellular organisms → Bacteria1215Open in IMG/M
3300033412|Ga0310810_11074937Not Available674Open in IMG/M
3300033475|Ga0310811_10866457All Organisms → cellular organisms → Bacteria825Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere13.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil8.37%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere8.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere5.91%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil4.43%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere4.43%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil3.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.94%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.45%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.96%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.96%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.46%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere2.46%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.46%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere2.46%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.97%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.97%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.48%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil1.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.48%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.48%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere1.48%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.48%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.99%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.99%
Termite NestEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest0.99%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.99%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.99%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.99%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.49%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.49%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.49%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.49%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.49%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.49%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.49%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.49%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.49%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.49%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.49%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.49%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.49%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.49%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2140918013Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)EnvironmentalOpen in IMG/M
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000550Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemlyEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300003267Sugarcane bulk soil Sample L1EnvironmentalOpen in IMG/M
3300003324Sugarcane bulk soil Sample H2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005293Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005333Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaGHost-AssociatedOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005339Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaGHost-AssociatedOpen in IMG/M
3300005343Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaGEnvironmentalOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005539Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2Host-AssociatedOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005834Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2Host-AssociatedOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006169Termite nest microbial communities from Madurai, IndiaEnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006576Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006876Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200EnvironmentalOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006894Agricultural soil microbial communities from Utah to study Nitrogen management - NC ControlEnvironmentalOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006918Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100EnvironmentalOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009789Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010037Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25EnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010041Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104AEnvironmentalOpen in IMG/M
3300010042Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105BEnvironmentalOpen in IMG/M
3300010166Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011431Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2EnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012503Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_RHost-AssociatedOpen in IMG/M
3300012509Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6EnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300013105Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaGHost-AssociatedOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300021445Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaGEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300022886Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S079-202R-5EnvironmentalOpen in IMG/M
3300025290Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5Host-AssociatedOpen in IMG/M
3300025321Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025893Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026067Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027880Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027886Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028768Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119EnvironmentalOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031731Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1Host-AssociatedOpen in IMG/M
3300031825 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T4_195EnvironmentalOpen in IMG/M
3300031847Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4EnvironmentalOpen in IMG/M
3300031852Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3Host-AssociatedOpen in IMG/M
3300031901Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2Host-AssociatedOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300032002Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3Host-AssociatedOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032122Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300033475Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YCEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Iowa-Corn-GraphCirc_025617302140918013SoilMAAAVVGSLLLVVCDDGSVFELDPNGAWVERAPVPGTPAAHADEIRRQEPRFD
ICChiseqgaiiDRAFT_064783923300000033SoilMARKPMAAAVVGSLLLVVCDDGSVFELDPNGAWVERAPVPGTPAAHADEIRRQEPRFD*
F24TB_1224811313300000550SoilMARKPMAAAVVGNFLMVVCDDGSVYELDPNGAWVERNPIPGTPASHADEIRRQEPRFD*
F24TB_1363425923300000550SoilMARKPMAAAVVGSLLMVVCDDGSVFELDPNGTWVERAPVPGTAASHADEIRRQEPRFD*
JGI10216J12902_11437798013300000956SoilTAAVVIAGLLVVVCDDGAIFELDPNGEWVDRRPVPGTPAAHADEIRRQEPRFD*
soilL1_1021294123300003267Sugarcane Root And Bulk SoilMARKPTAAAVVGNLLIVVCDDGSVYELDPDGAWVERRPVPGTPAAHADEIRRQEPRFD*
soilH2_1007254723300003324Sugarcane Root And Bulk SoilMMARKPTAAAVIGNLLMVVCDDGSVYELDPDGAWVERRPVPGTPAAHADEIRRQEPRFD*
soilH2_1007554623300003324Sugarcane Root And Bulk SoilMARRPVAAAVVGSLLMVVCDDGSVYELDPNGAWVERTPVPGTAASHADEIRRQEPRFD*
Ga0062593_10016070533300004114SoilMARKPMAAAVVGTILLVVCDDGAVYELDPDGAWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0062593_10079749113300004114SoilMARKPVAAAVVGSLLIVVCDDGSVFELDPNGAWVERAAVPGTAAAHADEIRRQEPRFD*
Ga0062589_10027963833300004156SoilMARKPMAAAVVSSLLMVVCDDGSVYELDPDGAWVERRPIPGTAAAHADEIRRQEPRFD*
Ga0062590_10094950123300004157SoilMARKPVAAAVVSSLLMVVCDDGAVYELDPNGVWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0062590_10265315823300004157SoilMARKPTAAVVIGTLLVVVCDDGAVYELDPNGVWIERRPVPGTPAAHSDEIRNQEPRFD*
Ga0063356_10179539523300004463Arabidopsis Thaliana RhizosphereMARKPMAAAVVGSLLLVVCDDGSVFELDPNGVWVERAPVPGTPAAHADEIRRQEPRFD*
Ga0062592_10168896413300004480SoilMARKPTAAVVIAGLLVVVCDDGAVFELDPNGAWVDRRPVPGTPAAHADEIRRQEPRFD*
Ga0062591_10069079423300004643SoilMTMARKPMAAAVVGSLLLVVCDDGSVFELDPNGAWVERAPVPGTPAAHADEIRRQEPRFD
Ga0062594_10253284413300005093SoilMARKPTAAVVIGTLLVVVCDDGAVYELDPNGAWIERRPVPGTPAAHSDEIRNQEPRFD*
Ga0065715_1108921423300005293Miscanthus RhizosphereMARKPTAAVVIAGLLVVVCDDGAVFELDPNGVWVDRRPVPGTPAAHSDEIRNQEHRFD*
Ga0065705_1039590133300005294Switchgrass RhizosphereMARKPVAAAVVSSLLIVVCDDGAVYELDPDGSWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0065707_1011902713300005295Switchgrass RhizosphereVGSLLLVVCDDGSVFELDPNGVWVERAPVPGTPAAHADEIRRQEPRFD*
Ga0070683_10152324423300005329Corn RhizosphereMARKPTAAVVIAGLLVVVCDDGAVFELDPNGEWVDRRSVPGTPAAHADEIRRQEPRFD*
Ga0070670_10015623923300005331Switchgrass RhizosphereMARKPMAAAVVGSLLIVVCDDGSVFELDPNGAWVERAPVPGTSAAHADEIRRQEPRFD*
Ga0070670_10019498053300005331Switchgrass RhizosphereRPMARKPTAAVVIGTLLVVVCDDGAVYELDPNGVWIERRPVPGTPAAHSDEIRNQEPRFD
Ga0070670_10208022413300005331Switchgrass RhizosphereMARKPVAAAVVSSLLIVVCDDGAVYELDPNGVWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0070677_1045381513300005333Miscanthus RhizosphereMARKPTAAVVIAGLLVVVCDDGAVFELDPDGAWVDRRPVPGTPAAHADEIRR
Ga0070666_1094961823300005335Switchgrass RhizosphereMGGRLDEVRFDATLTSTIRREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTAASHADEIRRQEPRFD*
Ga0070660_10118068713300005339Corn RhizosphereMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTAASHADEIRRQEPRFD*
Ga0070687_10141431913300005343Switchgrass RhizosphereMARKPVAAAVVSSLLMVVCDDGSVYELDPNGSWVERRPIPGTPAAHSDEIRRQEPRFD*
Ga0070669_10158357623300005353Switchgrass RhizosphereMARKPMAAAVVGTLLLVICDDGAVYELDPDGAWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0070671_10006963243300005355Switchgrass RhizosphereMRRRFNDVRFDATLTSTIRREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTAASHADEIRRQEPRFD*
Ga0070674_10017336823300005356Miscanthus RhizosphereMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTPASHADEIRRQEPRFD*
Ga0070674_10018513733300005356Miscanthus RhizosphereMARKPVAAAVVSSLLMVVCDDGAVYELDPDGSWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0070667_10151125223300005367Switchgrass RhizosphereMARKPMAAAVVGSLLLVVCDDGSVFELDPNGAWVERAPVPGTPASHADEIRRQEPRFD*
Ga0070709_1055911523300005434Corn, Switchgrass And Miscanthus RhizosphereMRPWVGEARFDATLTRTIRPEATTMARKPVAAAVVGSLLLVVCDDGSVFELDPNGAWIERVPVPGTAAAHADEIRRQEPRFD*
Ga0070694_10084621813300005444Corn, Switchgrass And Miscanthus RhizosphereMARKPAAAAVVGNLLMVVCDDGSVYELDPDGAWVERRPVPGTPAAHADEVRRQEPRFD*
Ga0070678_10023893023300005456Miscanthus RhizosphereMARKPVAAAVVSSLLMVVCDDGAVYELDPDGVWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0070706_10048801223300005467Corn, Switchgrass And Miscanthus RhizosphereMARKPAAAVVLGTLLVVVCDDGSVYELDPNGSWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0068853_10114504513300005539Corn RhizosphereTLTSTIRREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTAASHADEIRRQEPRFD*
Ga0070665_10003701533300005548Switchgrass RhizosphereMARKPVAAAVVSSLLMVVCDDGAVYELDPNGSWVERRAIPGTPAAHSEEIRRQEPRFD*
Ga0070665_10131120513300005548Switchgrass RhizosphereMARKPMAAAVVGSLLIVVCDDGSVFELDPNGAGVERAPVPGTSAAHADEIRRQE
Ga0068854_10225812023300005578Corn RhizosphereASHVPTLNDRHRSTTMARKPVAAAVVSSLLMVVCDDGAVYELDPNGVWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0068866_1064204013300005718Miscanthus RhizosphereMAAAVVGSLLMVVCDDGAVFELDPNGAWVERTPVPGTPASHADEIRRQEPRFD*
Ga0068861_10214554023300005719Switchgrass RhizosphereMGGRLDEVRFDATLTSTIRREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPRTAASHADEIRRQEPRFD*
Ga0068851_1005980423300005834Corn RhizosphereMARKPMAAAVVGSLLLVVCDDGSVFELDPNGVWVERAPVPGTPASHADEIRRQEPRFD*
Ga0068870_1117233013300005840Miscanthus RhizosphereMAAAVVGSLLLVVCDDGSVFELDPNGAWVERAAVPGTAAAHADEIRRQEPRFD*
Ga0068863_10058857533300005841Switchgrass RhizosphereVVGSLLLVVCDDGSVFELDPNGVWVERAPVPGTPAAHADEIRRQEPRFD*
Ga0068863_10059668933300005841Switchgrass RhizosphereRSTHFNDFAGSDTMARKPMAAAVVGSLLIVVCDDGSVFELDPNGAWVERAPVPGTSAAHADEIRRQEPRFD*
Ga0068863_10183787623300005841Switchgrass RhizosphereMARKPMAAAVVGSLLLVVCDDGSVFELDPNGAWVERAPVPGTPAAHADEIRRQ
Ga0068863_10246336213300005841Switchgrass RhizosphereARKPTAAVVIAGLLVVVCDDGAVFELDPNGEWVDRRSVPGTPAAHADEIRRQEPRFD*
Ga0068860_10084769913300005843Switchgrass RhizosphereMTPDLTQTLTSTIRREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTPAAHADEIRRQEPRFD*
Ga0068860_10248678613300005843Switchgrass RhizosphereATSTIRREAMTMARKPMAAAVVGSLLLVVCDDGSVFELDPNGVWVERAPVPGTPAAHADEIRRQEPRFD*
Ga0068862_10052186123300005844Switchgrass RhizosphereMARKPMAAAVVGTLLLVVCDDGAVYEMDPDGAWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0068862_10083079933300005844Switchgrass RhizosphereMARKPMAAAVIGSLLMVVCDDGSVYELDPDGAWLERRPIPGTPAAHADEIRRQEPRFD*
Ga0075417_1044458713300006049Populus RhizosphereMGRKPMAAAVVANLMVVVCDDGSVYELDPNGAWVERSPIPGTQAAHADEIRRQEPRFD*
Ga0082029_106971723300006169Termite NestMARKPVAAAVVGSLLMVVCDDGAVYELDPDGAWVERRPVPGTAAAHADEIRRQEPRFD*
Ga0082029_141068723300006169Termite NestMARKPVGVTVVGTLVVVVCDDGSVFELDPNGAWLERRPIPGTPAAHADEIRRQEPRFD*
Ga0097621_10087917323300006237Miscanthus RhizosphereMARKPTAAVVIGTLLVVVCDDGAVYELDPNGVWIERRPVPGTPAAHSDEIRNQEPR
Ga0074047_1158296523300006576SoilMARKPMAAAVVGSLLMVVCDDGAVYELDPNGAWVERAPVPGTPAAHSDEIRRQEPRFD*
Ga0079222_1089546213300006755Agricultural SoilMARKPMAAAVVANLMVVVCDDGAVYELDPNGVWVERSPVPGTPAAHADEIRRQEPRFD*
Ga0075428_10004090743300006844Populus RhizosphereMARKPVAAAVVGSLLMVVCDDGAVYELEPNGTWVERAPVPGTPAAHSDEIRRQEPRFD*
Ga0075428_10042537433300006844Populus RhizosphereMARKPMAAAVVGSLLMVVCDDGAVYELEPNGTWVERAPVPGTAAAHADEIRRQEPRFD*
Ga0075428_10057268123300006844Populus RhizosphereMARKPVAAAVLGTLLWVVCDDGSVYEMDPDGAWVERRPVPGTPASHADEIRRQEPRFD*
Ga0075428_10214055713300006844Populus RhizosphereMARKPVAAVVVGTLLVVVCDDGSVHEFEPNGAWVERRPIPGTPAAHADEIRRQEPRFD*
Ga0075421_100000964223300006845Populus RhizosphereMSRKPVGATVVGTLLVVVCDDGAVYELDPNGAWLERRPIPGTAAAHADEIRRQEPRFD*
Ga0075421_10003451463300006845Populus RhizosphereMARKPVGVTVVGTLLVVVCDDGAVYELDPNGAWLERRPIPGTAAAHADEIRRQEPRFD*
Ga0075421_10006199033300006845Populus RhizosphereVPVGGTIDTEGIDLNDSFWSTMMARKPVAAAVLGTLLWVVCDDGSVYEMDPDGAWVERRPVPGTPASHADEIRRQEPRFD*
Ga0075421_10075831933300006845Populus RhizosphereVVRESDVPTLNDRHRSTTMARKPVAAAVVSSLLIVVCDDGAVYELDPDGSWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0075421_10108596513300006845Populus RhizosphereRSTTMARKPVAAAVVSSLLMVVCDDGAVYELDPDGAWIERRPTPGTAAAHADEIRRQEPRFD*
Ga0075430_10141309923300006846Populus RhizosphereARKPMAAAVVGSFLMVVCDDGAVYEMDPDGAWVERRPIPGTPAAHADEIRRQEPRFD*
Ga0075425_10238034123300006854Populus RhizosphereMIRREATTMARKPMAAAVVGSLLMVVCDDGAVFELDPNGAWVERAPVPGTPASHADEIRRQEPRFD*
Ga0079217_1087070223300006876Agricultural SoilMARKPVAATVVGTLLIVVCDDGSVYEFDPNGTWIERRPIPGTAASHADEIRRQEPRFD*
Ga0068865_10045061123300006881Miscanthus RhizosphereMTPDLTQTLTSTIRREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTPASHADEIRRQEPRFD*
Ga0068865_10045101933300006881Miscanthus RhizosphereAVVSSLLIVVCDDGAVYELDPDGSWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0079215_1035894833300006894Agricultural SoilFWSAIMARKPMAAAVVGTLLMVVCDDGSVYELDPNGSWVERRPIPGTPAAHSDEIRRQEPRFD*
Ga0075424_10005128723300006904Populus RhizosphereMARKPVAAAVVGSLLMVVCDDGAVYELEPNGTWVERAPVPGSPAAHSDEIRRQEPRFD*
Ga0079216_1035622633300006918Agricultural SoilMARKPVAAAVVSSLLMVVCDDGAVYELDPNGSWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0079216_1095947313300006918Agricultural SoilMARKPMAAAVVGTIMLVVCDDGAVYELDPDGMWIEKRPIPGTPAAHSDEIRRQEHRFD*
Ga0075419_1068712113300006969Populus RhizosphereVAAAVVGSLLMVVCDDGAVYELEPNGTWVERAPVPGTPAAHSDEIRRQEPRFD*
Ga0079218_1150598623300007004Agricultural SoilMARKPVAAAVVSSLLMVVCDDGAVYELDPDGAWVERRPIPGTAAAHADEIRRQEPRFD*
Ga0079218_1216350713300007004Agricultural SoilMARKPVAAVVVGTLLVVVCDDGSVHEFDPNGAWVERRPIPGTQAAHSDEIRRQEPRLD*
Ga0079218_1241555213300007004Agricultural SoilMARKPMAAAVVGTLLMVVCDDGAVYELEPGGTWVERRPIPGTQAAHSDEIRRQEPRFD*
Ga0111539_1039775123300009094Populus RhizosphereMRRRLDDVRFDPTPTSTIPREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGTWVERAPVPGTAASHADEIRRQEPRFD*
Ga0111539_1341216713300009094Populus RhizosphereMAAAVVGNFLMVVCDDGSVYELDPNGAWVERNPIPGTPASHADEIRRQEPRFD*
Ga0105245_1033412123300009098Miscanthus RhizosphereMAAAVVGSLLLVVCDDGSVFELDPNGVWVERAPVPGTPAAHADEIRRQEPRFD*
Ga0105245_1128131523300009098Miscanthus RhizosphereVARESDVPTLNDRHRSTTMARKPVAAAVVSSLLIVVCDDGAVYELDPDGSWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0075418_10012857103300009100Populus RhizosphereMAAAVVGSLLMVVCDDGAVYELEPNGTWVERAPVPGTAAAHADEIRRQEPRFD*
Ga0075418_1045884523300009100Populus RhizosphereMRRRLDDVRFDPTPASTIPREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGTWVERAPVPGTAASHADEIRRQEPRFD*
Ga0114129_1075926323300009147Populus RhizosphereMAAAVVANLMVVVCDDGSVYELDPNGAWVERSPIPGTQAAHADEIRRQEPRFD*
Ga0105241_1091535433300009174Corn RhizosphereTSTIRREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTPASHADEIRRQEPRFD*
Ga0105242_1002399523300009176Miscanthus RhizosphereMTPDLTQTLTSTIRREATTMARKPMAAAVVGSLLLVVCDDGSVFELDPNGAWVERAPVPGTPASHADEIRRQEPRFD*
Ga0105242_1276222213300009176Miscanthus RhizosphereMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTAASHADEIRRQEPRFD*
Ga0105248_1021657333300009177Switchgrass RhizosphereVVIGTLLVVVCDDGAVYELDPNGVWIERRPVPGTPAAHSDEIRNQEPRFD*
Ga0105249_1271498813300009553Switchgrass RhizosphereIPGARPMARKPTAAVVIGTLLVVVCDDGAVYELDPNGAWIERRPVPGTPAAHSDEIRNQEPRFD*
Ga0126307_1063632823300009789Serpentine SoilMMARKPVAAAVVSSLLMVVCDDGAVYELDPNGAWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0126313_1032005423300009840Serpentine SoilMAAAVVSSLLMVVCDDGAVYELDPNGSWTERRPIPGTAAAHADEIRRQEPRFERERRCHGSG
Ga0126313_1112177923300009840Serpentine SoilMARKPTAAVVIAGLLVVVCDDGAVYELDPNGVWVDRRPVPGTPAAHADEIRNQEHRFD*
Ga0126304_1016872613300010037Serpentine SoilVAHESDVPTLNDRHRSTMMARKPVAAAVVSSLLMVVCDDGAVYELDPNGAWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0126308_1089252023300010040Serpentine SoilMMARKPVAAAVVSSLLMVVCDDGAVYELDPTGAWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0126312_1087672613300010041Serpentine SoilKPVAAAVVSSLLMVVCDDGAVYELDPNGAWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0126314_1031534633300010042Serpentine SoilMMARKPVAAAVVSSLLMVVCDDGAVYELDPNGVWVDRRPVPGTPAAHADEIRNQEHRFD*
Ga0126306_1181828723300010166Serpentine SoilMAAAVVGSLLIVVCDDGAVYELDPDGAWVERRPIPGTPAAHSDEIRRQEHRFD*
Ga0134128_1288469923300010373Terrestrial SoilAAAVVGSLLLVVCDDGSVFELDPNGAWVERAPVPGTPAAHADEIRRQEPRFD*
Ga0134124_1165556623300010397Terrestrial SoilRLDEVRFDATLTSTIRREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTAASHADEIRRQEPRFD*
Ga0126383_1226730613300010398Tropical Forest SoilMRPRVDGARFDATLGSTIRREATTMARKPMAAAVVGSLLIVVCDDGAVFELDPNGAWIERASVPGTPASHADEIRRQEPRFD*
Ga0134122_1063402513300010400Terrestrial SoilMAAAVVANLMVVVCDDGAVYELDPNGAWVERAPIPGTAAAHADEIRRQEPRFD*
Ga0134123_1309790913300010403Terrestrial SoilMAAAVVGSLLLVVCDDGSVFELDPNGAWVERAPVPGTPAAHADEIRRQEPRFD*
Ga0134123_1360338413300010403Terrestrial SoilMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTPASHADEIRRQEPRFD*
Ga0137438_122896023300011431SoilVRYASATIDQRIPRSTTMARKPAAAVVIGTLLVVVCDDGAVYELDPNGAWIDRRPVPGTPAAHADEIRRQEPRFD*
Ga0150985_10349091833300012212Avena Fatua RhizosphereGSLLIVVCDDGSVFELDPNGAWVERAAVPGTAAAHADEIRRQEPRFD*
Ga0157313_105472623300012503Arabidopsis RhizosphereMTMARKPMAAAVVGSLLLVVCDDGSVFELDPNGAWVERAPVPGTPAAHADEIRRQEP
Ga0157334_107287313300012509SoilGNFLMVVCDDGAVYELDPNGTWVERAPVPGTPASHADEIRRQEPRFD*
Ga0164303_1021404413300012957SoilKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTPASHADEIRRQEPRFD*
Ga0164302_1004707023300012961SoilMAAAVVGTLLMVVCDDGAVYELDPNGTWVERAPVPGTPAAHSDEIRRQEPRFD*
Ga0126369_1148475323300012971Tropical Forest SoilMRPRVDGARFDATLGSTIRREATTMARKPVAAAVVGSLLMVVCDDGSVFELDPNGAWVERGPVPGTPAAHADEIRRQEPRFD*
Ga0126369_1343099523300012971Tropical Forest SoilVVGSLLIVVCDDGAVFELDPNGAWIERASVPGTPASHADEIRRQEPRFD*
Ga0164308_1009840523300012985SoilMRRRLDDVRFDATLTSTIRREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTPASHADEIRRQEPRFD*
Ga0164304_1024505423300012986SoilMRSWLDDVRFDATLTSTIRREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTPASHADEIRRQEPRFD*
Ga0164306_1019083213300012988SoilARGSMTPDLTQTLTSTIRREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTPASHADEIRRQEPRFD*
Ga0157369_1060142913300013105Corn RhizosphereLQSFRREATTMARKPVAAAVVGSLLIVVCDDGSVFELDPNGAWVERAAVPGTAAAHADEIRRQEPRFD*
Ga0157374_1041400823300013296Miscanthus RhizosphereMTMARKPMAAAVVGSLLLVVCDDGSVFELDPNGAWVERAAVPGTAAAHADEIRRQEPRFD
Ga0157378_1006473223300013297Miscanthus RhizosphereMTPDLTQTLSSTIRREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTPASHADEIRRQEPRFD*
Ga0157375_1165547813300013308Miscanthus RhizosphereMAAAVVGSLLIVVCDDGSVFELDPNGAWVERAPVPGTSAAHADEIRRQEPRFD*
Ga0157375_1371571623300013308Miscanthus RhizosphereMTPDLTQTLTSTIRREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAAVPGTAAAHADEIRRQEPRFD*
Ga0157380_1212044413300014326Switchgrass RhizospherePTLNDRHRSTTMARKPVAAAVVSSLLMVVCDDGAVYELDPNGVWVERRPVPGTPAAHADEIRRQEPRFD*
Ga0132258_1020476323300015371Arabidopsis RhizosphereMIRREATTMARKPMAAAVVGSLLMVVCDDGAVFELDPNGAWVERTPVPGTPASHADEIRRQEPRFD*
Ga0132258_1131858313300015371Arabidopsis RhizosphereMAAAVVGSLLMVVCDDGAVYELDPNGTWVERAPVPGTPASHADEIRRQEPRFD*
Ga0132258_1209449823300015371Arabidopsis RhizosphereMARKPTAAVVIAGLLVVVCDDGAVFELDPNGAWVDRRPVPGTPAAHSDEIRNQEPRFD*
Ga0132256_10040629233300015372Arabidopsis RhizosphereMARKPVAAAVVGSLLMVVCDDGAVYERDPNGTWVERAPVPGTAAAHADEIRRQEPRFD*
Ga0132256_10375160523300015372Arabidopsis RhizosphereMAAAVGGSLLMVVCDDGAVYELDPNGTWVERAPVPGTPASHADEIRRQEPRFD*
Ga0132255_10003382233300015374Arabidopsis RhizosphereMARKPMAAAVVGSLLMVVCDDGAVFELDPNGAWVERAPVPGTPASHADEIRRQEPRFD*
Ga0132255_10109590633300015374Arabidopsis RhizosphereSRTVTPTVRQEATTMARKPVAAAGVGSLLMVVCDDGAVYELEPNGTWVERAPVPGTAAAHADEIRRQEPRFD*
Ga0132255_10562717123300015374Arabidopsis RhizosphereMARKPMAAAVVGNFLMVVCDDGSVYELDPDGAWVERRPIPGTAAAHADEIRRQEPRFD*
Ga0190270_1307016813300018469SoilMARKPVAAAVVSSLLMVVCDDGAVYELDPDGAWVERRPIPGTAAAHADEIRRQEPRFD
Ga0190274_1014477323300018476SoilMARKPVAAAVVSSLLIVVCDDGAVYELDPDGSWVERRPVPGTPAAHADEIRRQEPRFD
Ga0190274_1136934623300018476SoilMARKPMAAAVVGTFLLVVCDDGAVYEMDPDGAWVERRPVPGTPAAHADEIRRQEPRFD
Ga0190271_1102067823300018481SoilMARKPVAAAVVSSLLMVVCDDGAVYELDPDGAWVERRPIPGTAAAHADEIRRQE
Ga0182009_1013790133300021445SoilMAAAVVGSLLIVVCDDGSVFELDPNGAWVERAPVPGTSAAHADEIRRQEPRFD
Ga0222622_1068058123300022756Groundwater SedimentMARKPTAAVVIGTLLVVVCDDGAVYELDPNGVWIERRPVPGTPAAHSDEIRNQEPRFD
Ga0247746_119335613300022886SoilMARKPMAAAVVSSLLMVVCDDGSVYELDPDGAWVERRPIPGTAAAHADEIRRQEPRFD
Ga0207673_103246213300025290Corn, Switchgrass And Miscanthus RhizosphereMARKPMAAAVVGSLLLVVCDDGSVFELDPNGVWVERAPVPGTPAAHADE
Ga0207656_1045130723300025321Corn RhizosphereMARKPVAAAVVGSLLIVVCDDGSVFELDPNGAWVERAAVPGTAAAHADEIRRQEPRFD
Ga0207682_1001422413300025893Miscanthus RhizosphereMARKPVAAAVVSSLLMVVCDDGAVYELDPNGVWVERRPVPGTPAAHADEIRRQEPRFD
Ga0207682_1017885933300025893Miscanthus RhizosphereMARKPMAAAVVGSLLLVVCDDGSVFELDPNGAWVERAPVPGTPAAHADEIRRQEPRFD
Ga0207642_1007017043300025899Miscanthus RhizosphereVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTPASHADEIRRQEPRFD
Ga0207642_1070176833300025899Miscanthus RhizosphereRSTTMARKPVAAAVVSSLLIVVCDDGAVYELDPDGSWVERRPVPGTPAAHADEIRRQEPRFD
Ga0207688_1003300323300025901Corn, Switchgrass And Miscanthus RhizosphereMARKPMAAAVVGSLLLVVCDDGSVFELDPNGVWVERAPVPGTPAAHADEIRRQEPRFD
Ga0207680_1068787923300025903Switchgrass RhizosphereMARKPTAAVVIGTLLVVVCDDGAVYELDPNGAWIERRPVPGTPAAHSDEIRNQEPRFD
Ga0207680_1093919223300025903Switchgrass RhizosphereMGGRLDEVRFDATLTSTIRREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPRTAASHADEIRRQEPRFD
Ga0207680_1104132423300025903Switchgrass RhizosphereMARKPMAAAVVGSLLIVVCDDGSVFELDPNGAWVERAPVPGTSAAHADEIRRQE
Ga0207657_1026936533300025919Corn RhizosphereMGGRLDEVRFDATLTSTIRREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTAASHADEIRRQEPRFD
Ga0207681_1126887223300025923Switchgrass RhizosphereMARKPMAAAVVGTLLLVICDDGAVYELDPDGAWVERRPVPGTPAAHADEIRRQEPRFD
Ga0207650_1177875613300025925Switchgrass RhizosphereMARKPTAAVVIAGLLVVVCDDGAVFELDPNGEWVDRRSVPGTPAAHADEIRRQEPRFD
Ga0207687_1082258813300025927Miscanthus RhizosphereMTMARKPMAAAVVGSLLLVVCDDGSVFELDPNGVWVERAPVPGTPAAHADEIRRQEPRFD
Ga0207644_1015869623300025931Switchgrass RhizosphereMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTAASHADEIRRQEPRFD
Ga0207711_1114501113300025941Switchgrass RhizosphereMGGRLDEVRFDATLTSTIRREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTAASHADEIRR
Ga0207668_1215985313300025972Switchgrass RhizosphereTSWSRSATMARKPVAAAVVSSLLMVVCDDGAVYELDPNGSWVERRAIPGTPAAHSEEIRRQEPRFD
Ga0207678_1187123623300026067Corn RhizosphereTTMARKPVAAAVVGSLLIVVCDDGSVFELDPNGAWVERAAVPGTAAAHADEIRRQEPRFD
Ga0207708_1034391813300026075Corn, Switchgrass And Miscanthus RhizosphereIRREATTMARKPMAAAVVGSLLMVVCDDGSVFELDPNGAWVERAPVPGTAASHADEIRRQEPRFD
Ga0207641_1050776213300026088Switchgrass RhizosphereSTIRREAMTMARKPMAAAVVGSLLLVVCDDGSVFELDPNGAWVERAPVPGTPAAHADEIRRQEPRFD
Ga0207641_1067693923300026088Switchgrass RhizosphereMARKPTAAVVIGTLLVVVCDDGAVYELDPNGVWVERRPVPGTPAAHSDEIRNQEPRFD
Ga0207648_1004209123300026089Miscanthus RhizosphereMARKPMAAAVVGSLLVVVCDDGSVFELDPNGAWVERAPVPGTPASHADEIRRQEPRFD
Ga0207683_1018078243300026121Miscanthus RhizosphereMARKPTAAVVIAGLLVVVCDDGAVFELDPDGAWVDRRPVPGTPAAHADEIRRQEPRFD
Ga0207683_1041111113300026121Miscanthus RhizosphereAAAVVSSLLMVVCDDGAVYELDPDGVWVERRPVPGTPAAHADEIRRQEPRFD
Ga0207698_1032462013300026142Corn RhizosphereMARKPVAAAVVGSLLIVVCDDGSVFELDPNGAWVERAAVPGTAAAHADE
Ga0209814_1026207513300027873Populus RhizosphereMGRKPMAAAVVANLMVVVCDDGSVYELDPNGAWVERSPIPGTQAAHADEIRRQEPRFD
Ga0209814_1048988513300027873Populus RhizosphereTAMARKPMAAAVVGNFLMVVCDDGSVYELDPNGAWVERNPIPGTPASHADEIRRQEPRFD
Ga0209481_1016023123300027880Populus RhizosphereVPVGGTIDTEGIDLNDSFWSTMMARKPVAAAVLGTLLWVVCDDGSVYEMDPDGAWVERRPVPGTPASHADEIRRQEPRFD
Ga0209486_1090775623300027886Agricultural SoilMARKPVAAAVVSSLLMVVCDDGAVYELDPDGAWVERRPIPGTAAAHADE
Ga0207428_1038308623300027907Populus RhizosphereMARKPVAAAVVGSLLMVVCDDGAVYELEPNGTWVERAPVPGTPAAHSDEIRRQEPRFD
Ga0209382_1003957333300027909Populus RhizosphereMARKPVGVTVVGTLLVVVCDDGAVYELDPNGAWLERRPIPGTAAAHADEIRRQEPRFD
Ga0209382_1020771023300027909Populus RhizosphereMARKPMAAAVVGSLLMVVCDDGAVYELEPNGTWVERAPVPGTAAAHADEIRRQEPRFD
Ga0209382_1022830823300027909Populus RhizosphereMSRKPVGATVVGTLLVVVCDDGAVYELDPNGAWLERRPIPGTAAAHADEIRRQEPRFD
Ga0209382_1044586723300027909Populus RhizosphereMARKPMAAAVVGNFLMVVCDDGSVYELDPNGAWVERNPIPGTPASHADEIRRQEPRFD
Ga0209382_1090600133300027909Populus RhizosphereMARKPVAAVVVGTLLVVVCDDGSVHEFEPNGAWVERRPIPGTPAAHADEIRRQEPRFD
Ga0268266_1024917633300028379Switchgrass RhizosphereMARKPVAAAVVSSLLMVVCDDGAVYELDPNGSWVERRAIPGTPAAHSEEIRRQEPRFD
Ga0268266_1064746313300028379Switchgrass RhizosphereMARKPTAAVVIGTLLVVVCDDGAVYELDPNGAWIERRPVPGTPAAHSDEIRNQEPR
Ga0268265_1078285833300028380Switchgrass RhizosphereMARKPMAAAVIGSLLMVVCDDGSVYELDPDGAWLERRPIPGTPAAHADEIRRQEPRFD
Ga0307280_1021417113300028768SoilVVIGTLLVVVCDDGAVYELDPNGVWIERRPVPGTPAAHSDEIRNQEPRFD
Ga0307408_10000364823300031548RhizosphereMARKPMAAAVVGSLLMVVCDDGSVFELDPNGTWVERAPVPGTAASHADEIRRQEPRFD
Ga0307408_10071666123300031548RhizosphereMARKPMAAAVVGTLLMVVCDDGAVYELDPNGSWVERRPIPGTPAAHSAEIRRQEPRFD
Ga0307408_10177086523300031548RhizosphereMARKPVAAAVVSSLLMVVCDDGAVYELDPDGAWIERRPIPGTAAAHADEIRRQEPRFD
Ga0310813_1057369823300031716SoilMARKPVAAAVVGSLLIVVCDDGSVFELDPNGAWVERAAVPGTAAAHADEIRRQEP
Ga0310813_1142594723300031716SoilMTPALGGARTARGRQISRAVTPTVRQEATTMARKPVAAAVVGSLLMVVCDDGAVYELDPNGTWVERAPVPGTAAAHADEIRRQEPRFD
Ga0307469_1249750313300031720Hardwood Forest SoilMIRREATTMARKPMAAAVVGSLLMVVCDDGAVFELDPNGAWVERTPVPGTPASHADEIRRQEPRFD
Ga0307405_1075485933300031731RhizosphereMARKPVAAAVVSSLLMVVCDDGAVYELDPDGAWVERRPVPGTAAAHADEIRRQEPRFD
(restricted) Ga0255338_1000466103300031825Sandy SoilMARKPVGLAVLGTLLMVVCDDGAVYELDPNGSWIERRPVPGTAAAHSDEIRRQEPRFD
Ga0310907_1035993333300031847SoilVARESDVPTLNDRHRSTTMARKPVAAAVVSSLLIVVCDDGAVYELDPDGSWVERRPVPGTPAAHADEIRRQEPRFD
Ga0307410_1042116833300031852RhizosphereRKPVAAAVVSSLLMVVCDDGAVYELDPNGAWVERRPVPGTPAAHADEIRRQEPRFD
Ga0307410_1061996723300031852RhizosphereMARKPMAAAVVGTLLMVVCDDGAVYELDPNGSWVERRPIPGTPAAHSDEIRRQEPRFD
Ga0307410_1200037813300031852RhizosphereLGAGQWQNRHEGIDINDSFWSTMMARKPVAAAVLGTLLWVVCDDGSVYEMDPNGAWVERRPVPGTPASHADEIRRQEPRFD
Ga0307406_1021300433300031901RhizosphereMARKPVAAAVVSSLLMVVCDDGAVYELDPNGAWVERRPVPGTPAAHADEIRRQEPRFD
Ga0308175_10103701533300031938SoilMARKPMAAAVVGSLLIVVCDDGSVFELDPNGAWVERAPVPGTSAAHADEIRRQEPRFD
Ga0308175_10177047723300031938SoilMARKPTAAVVIAGLLVVVCDDGAVFELDPNGAWVDRRPVPGTPAAHADEIRRQEPRFD
Ga0308174_1015014623300031939SoilMARKPTAAVVIAGLLVVVCDDGAVFELDPNGVWVDRRPVPGTPAAHSDEIRNQEHRFD
Ga0307416_10027761733300032002RhizosphereMARKPVAAAVVGTLLMVVCDDGSVYELDPDGAWVERRPIPGTPASHADEIRRQEPRFD
Ga0310890_1002900613300032075SoilVAAAVVSSLLIVVCDDGAVYELDPDGSWVERRPVPGTPAAHADEIRRQEPRFD
Ga0310895_1017331513300032122SoilPMAAAVVGSLLLVVCDDGSVFELDPNGAWVERAPVPGTPAAHADEIRRQEPRFD
Ga0307471_10128232813300032180Hardwood Forest SoilMARKPMAAAVVGSLLMVVCDDGAVFELDPNGAWVERTPVPGTPASHADEIRRQEPRFD
Ga0307472_10191043023300032205Hardwood Forest SoilMIRREATTMARKPMAAAVVGSLLMVVCDDGAVFELDPNGAWVERAPVPGTPASHADEIRRQEPRFD
Ga0310810_1008321633300033412SoilMARKPTAAAVVGNFLMVVCDDGAVYELDPNGAWVERTPIPGTPASHADEIRRQEPRFD
Ga0310810_1049700623300033412SoilMARKPTAAVVIAGLLVVVCDDGAVFELDPNGEWVDRRSVPGTPAAHADE
Ga0310810_1107493713300033412SoilMARKPVAAAVVGSLLIVVCDDGSVFELDPNGAWVERAAVPGTAAAHADEIRRQE
Ga0310811_1086645713300033475SoilMARKPMAAAVVGSLLIVVCDDGSVFELDPNGAWVERAPVPGTAASHADEIRRQEPRFD

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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