kmerDB: a database encompassing the set of genomic and proteomic sequence information of each species
kmerDB is a web-based, interactive database that provides the kmer sequences that are present or absent in each species at the genomic and proteomic level. The database also provides the set of sequences that are unique in each species across the available genomes and proteomes for multiple sequence lengths. This resource will be valuable for researchers across disciplines including scientists working on novel detection platforms, for antibody development, for studying evolution or for pathogen surveillance among others.
How to cite
To cite kmerDB, please refer to the following publication:
Mouratidis, I., Baltoumas, F.A., Chantzi, N., Patsakis, M., Chan, C.S.Y., Montgomery, A., Konnaris, M.A., Aplakidou, E., Georgakopoulos, G.C., Chartoumpekis, D., Kovac, D., Pavlopoulos, G.A. & Georgakopoulos-Soares, I. (2023)
kmerDB: a database encompassing the set of genomic and proteomic sequence information of each species.
Submitted
Database statistics
| Proteomes | Protein kmers | Nullpeptides | Protein quasiprimes | Protein primes |
|---|---|---|---|---|
| 21,865 | 44,019,181,382 | 339,223,621,873 | 149,305,183 | 214,904,089 |
| Genomes | Nucleotide kmers | Nullomers | Nucleotide quasiprimes | Nucleotide primes |
| 54,039 | 242,366,914,024 | 505,812,292,016 | 6,905,362 | 5,186,757 |