Scaffold Ga0210397_10000001

Overview

Basic Information

• Taxon OID: 3300021403
• Scaffold ID: Ga0210397_10000001
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 678427
• Total Scaffold Genes: 624
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 462 (74.04%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011114	Metagenome / Metatranscriptome	295	Y
F014564	Metagenome / Metatranscriptome	262	Y
F014566	Metagenome / Metatranscriptome	262	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210397_10000001371	F011114	GGA	MRPAVLSISEERVLSPIRNAVLAHAGYGVIPVFTIEAALKVLHARHVCAIVIANSISVQDRRRLCTEGHDLHIPSVVLDPYEQSADDESELHVNPLDGPEVFLDALASLMQRDHRPCITGEAVKLA
Ga0210397_10000001505	F014566	AGGA	MFDLIVITLVGILLLFAIYTAVQVLGRYPSRTIDDVTPFLRPAELQELESLLDPAHEANFKLRMPPQEFAEWQRKQIHLMREYLLRMSHNALVLIEWGNLEMQKNEKRQEPSVPSLAHELVQAATEFRLYSILVLVKLKFWLILPSTCRFFLPTTHLSSLRRLFGIDGLNSYQRLKTAAVGLSLTYDVHFHQELLERL
Ga0210397_10000001524	F014564	GGAG	MIDAVIKETALKEANQAFGKQVTNQVARITSELNRLEQLLSAGMVDRRVLSEFRYAVDRARQTGWQVEKWLDGDSRELSALIADERIRCITRMTNHLASELEVSGKSVPGLDSLREAMRKLDTVMSKQA