Sample 7000000526

Basic Information
IMG/M Taxon OID	7000000526 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0053080 \| Ga0030527
Sample Name	Human stool microbial communities from NIH, USA - visit 1, subject 765560005
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

7000000526 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063646 | Gp0053080 | Ga0030527

Sample Name

Human stool microbial communities from NIH, USA - visit 1, subject 765560005

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	106752684
Sequencing Scaffolds	11
Novel Protein Genes	13
Associated Families	13

Dataset Contents

Total Genome Size

106752684

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctDOT22	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctDOT22

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Ecosystem Assignment (GOLD)

Name

Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F051210	Metagenome / Metatranscriptome	144	Y
F058555	Metagenome	135	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F077405	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F085718	Metagenome	111	N

Scaffold	Taxonomy	Length	IMG/M Link
C1405470	Not Available	707	Open in IMG/M
C1418917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	853	Open in IMG/M
SRS019397_WUGC_scaffold_16975	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	16413	Open in IMG/M
SRS019397_WUGC_scaffold_1859	Not Available	13037	Open in IMG/M
SRS019397_WUGC_scaffold_20172	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctDOT22	31396	Open in IMG/M
SRS019397_WUGC_scaffold_21088	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1987	Open in IMG/M
SRS019397_WUGC_scaffold_23508	Not Available	23832	Open in IMG/M
SRS019397_WUGC_scaffold_24025	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	10235	Open in IMG/M
SRS019397_WUGC_scaffold_26838	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	6894	Open in IMG/M
SRS019397_WUGC_scaffold_26950	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5743	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

C1405470

Not Available

707

Open in IMG/M

C1418917

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

853

Open in IMG/M

SRS019397_WUGC_scaffold_16975

16413

Open in IMG/M

SRS019397_WUGC_scaffold_1859

Not Available

13037

Open in IMG/M

SRS019397_WUGC_scaffold_20172

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctDOT22

31396

Open in IMG/M

SRS019397_WUGC_scaffold_21088

1987

Open in IMG/M

SRS019397_WUGC_scaffold_23508

Not Available

23832

Open in IMG/M

SRS019397_WUGC_scaffold_24025

10235

Open in IMG/M

SRS019397_WUGC_scaffold_26838

6894

Open in IMG/M

SRS019397_WUGC_scaffold_26950

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

5743

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1405470	C1405470__gene_127808	F077405	PTELFPRLLVAKQRGVFYGFISLCQIKFVKKVFDWLKIIQKQKVRLK
C1418917	C1418917__gene_131285	F097493	MKNGTAYFYERGVEIDGTVYGIRTDSDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTSIIFKQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGDETMSQDEINAMLMLQIAELKAGVDGE
SRS019397_WUGC_scaffold_16975	SRS019397_WUGC_scaffold_16975__gene_49323	F080673	MDEIIKLQDEILSYLRNNITKDEAYYILTTDKDMIEVLISDKKDGSKRIKILDMEYTIERDDMLLLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILYNINREKVMKYPYIAIQLDNIQTIEKRRVVFEITGHRMDDNKERIDFMFIYFMARLCV
SRS019397_WUGC_scaffold_1859	SRS019397_WUGC_scaffold_1859__gene_5035	F077313	MGKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTQIGFDIQQPDINTIDTSDLSALVDSNKKVDKSGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGTRARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEDPDVKLDMPELIDPNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
SRS019397_WUGC_scaffold_20172	SRS019397_WUGC_scaffold_20172__gene_58112	F051210	MAIVNESKLINEAFSDQKVVDRLIGSSVSNEDARIRMGEYKKLFSRYNDLKEFNENTKMFSGYAETPLLSTQYFNASVASYVSSFAGFMSIERDFDQPNGLFYWFDVLGVTDYRSVIPNLGADNFENINSTGRFEADIQVTAETAYDYMIGRKIIPGTLRIKVLKKDGTKFELVDAGQGEFMAKAGVITASQISYANGQVKFTLGTALTPNDDVITVVGAEDVCGTPSNLNGAAPAKNENRFLAKMQQIGLSTVPDMLTAEYNIAALGAMKKATGSDMATFLFNKLRELYTKIINQRLVKTLVNSYVGNTYEVQMQTGIAGYHDYRSSVDFFNAELINIESELASKAVKGVTVTAYIGGMSATNQFQKGASIGKWEKNTKMTYINDLLGWYDGVPVLRSNDVPANDFYAIHKTADGQMAPLARGIYMPLTDTPTIGNYNNPTQMAAGIYYQEGIKSMAPELVQKCTIINA
SRS019397_WUGC_scaffold_21088	SRS019397_WUGC_scaffold_21088__gene_61003	F078006	MEDNILKRAAAELKEAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCCVKEEATFDLATALDVLNEPLPRWCKSYGVYPEQYKDIDRWYNSDNYNKKIFKEI
SRS019397_WUGC_scaffold_21088	SRS019397_WUGC_scaffold_21088__gene_61005	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEPRILCDNGKGNRPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDETAV
SRS019397_WUGC_scaffold_23508	SRS019397_WUGC_scaffold_23508__gene_67932	F093883	MEDKDIKTEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEDDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYKLLMKQYNEFKDMKANATGKTKADE
SRS019397_WUGC_scaffold_23508	SRS019397_WUGC_scaffold_23508__gene_67937	F058555	MKLVYSQQKIKKNIMETKVTLLQKMKSNFDKILTEKYIPRNIQTKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIRISDECKMAMIYLIIINVLKHVFLRKRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDINYQLISLKAWAEGEIRIALSDIVKYKHKASKVPRIKDMFVKKGESIYTCIDKNLDSDSRRRMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKNISDLYDEVKKYNGIANTKDRKNVTIGYLRLLYKGKYMHILISTEYIKDVFLGEKSYEMSKAG
SRS019397_WUGC_scaffold_24025	SRS019397_WUGC_scaffold_24025__gene_69467	F078005	MKKSEFVKKLEKIIDMVKTEDDGFEYGGKVIFYKEDDDNCEINVRSIEMNLRVEANVMAGMDDMDFTCLMSEVYKQKVVKAIMMEKDDDEDN
SRS019397_WUGC_scaffold_26838	SRS019397_WUGC_scaffold_26838__gene_77699	F106193	LNFKDIIMGCNTCKEKALKAERERIERSMMNRPSSTVISDREYASRSTAGCMVMLDPLQTMERDVVSIYKQVRTKGGGVGISYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAKYIKP
SRS019397_WUGC_scaffold_26950	SRS019397_WUGC_scaffold_26950__gene_78168	F042095	MAKILYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNPFNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGQNDYRIIFRSLAIQYRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDMPGLEFLVVSHTLYVNDGIPVDRLSRSKKLIYIDLQNMGQRMTVIPEAIISKTEVYYLKMFNMLDLRDIESSGIRNIKNMKNLQTLDLSSCYLDRYIKEFNDLPKLTSLNIASGPPDMWNYFDINTLPFFEVDKINPNITDFAFLDDWKSGERRTGWNDDNMSGRGLEHLTSFIAAHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAICPTENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQRWTIKPE
SRS019397_WUGC_scaffold_2805	SRS019397_WUGC_scaffold_2805__gene_7803	F076653	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFLSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEESILAKELGYDINSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRENKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYNKGFKKRLAKRFNESLRGGGDLFGANLACMVCDHKDIDWEALRLWLDKYDEPNDKGMVNSPIQFMYLYLYYYFNK

Showing 1 to 13 of 13 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000526: Human stool microbial communities from NIH, USA - visit 1, subject 765560005

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences