7000000498: Human stool microbial communities from NIH, USA - visit 1, subject 160502038

Overview

Basic Information

• IMG/M Taxon OID: 7000000498
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053050 | Ga0030514
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 160502038
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 189692878
• Sequencing Scaffolds: 9
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F085718	Metagenome	111	N
F089590	Metagenome	109	N
F102167	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2755177	Not Available	1284
C2786712	Not Available	2272
C2801010	All Organisms → cellular organisms → Bacteria	3729
C2808609	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	6306
SRS017521_Baylor_scaffold_42034	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	5473
SRS017521_Baylor_scaffold_54650	Not Available	45178
SRS017521_Baylor_scaffold_56500	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1425
SRS017521_Baylor_scaffold_56738	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3695
SRS017521_Baylor_scaffold_56978	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	11718

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2755177	C2755177__gene_272502	F058555	MGDLHRLPIHPNNLFRIDETRIFAAKKLQKIMGTKISLLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKGGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYRHVIEDCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKDIFVGKKRSVYKCLNKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHTYKVTKRKTVKFNVAYLLNELNKNLIDIGMQEISKSTIYRYISMFLDMCKKSISDLYEEVVKNNGVVNTKDNNNVTIGHIRASYKGSVLYILISTDYIINVFLGKKSAEMSKAG
C2786712	C2786712__gene_286273	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWLREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADTYLVEVFKAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS
C2801010	C2801010__gene_292768	F102167	MDINQIKKYLPAGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKTNGHILTTFSFHDKDMEKLRMLIGNAIMAVGYRNNPLTGDGNTAIK
C2808609	C2808609__gene_296318	F106193	MMNHSSSTVVSDREYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRSIYIKP
SRS017521_Baylor_scaffold_42034	SRS017521_Baylor_scaffold_42034__gene_82336	F078005	KQNVYFCRHIKITHMKKSKFVKELERIIDMVKAEDDGFEYGGKVIFYKEDDDNYEISVKNIEMNLEVEANVMAGMDDMDFTCLMSEVYKQKAVKAIMMEKDDDEDN
SRS017521_Baylor_scaffold_54650	SRS017521_Baylor_scaffold_54650__gene_117016	F050794	MMLYTSNYFVKVRQKQLLDHTYSLSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPADDDNANIIIEHNGIIKKLMKEAEKLELDTDAIEAMMRDLLDELKDDIDLNILIFDVTQLLIKYNLFRLEAITEQEFKNSFVRMDSMNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG
SRS017521_Baylor_scaffold_54650	SRS017521_Baylor_scaffold_54650__gene_117019	F077313	MSKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGIEPLVNTNQGLPAPVNPLGIYSLDTPDQLRTKYANAFDQDSVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQDREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADDGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLEKNNKIDDENTRRLNASVLSKAINDSNDIVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDVAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGVNTDERLNYYKTFNPVAYDAYMRASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVETNRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQENVAQRAWADNVNARTWADTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDAKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
SRS017521_Baylor_scaffold_56500	SRS017521_Baylor_scaffold_56500__gene_125373	F057001	MTNKELNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEINEILKDNDIKVDKAIVPALVALAKDKEVVIQLCKEILPRVDETFCAYKEIERVYFDKQEQDKNTKLSEDKVAEISITGKAHKRFGYNEPVEYEGGVYYEVFNGSDKRIVKCAIPIKRYTFNLIAKCVTYYLTHPKNER
SRS017521_Baylor_scaffold_56738	SRS017521_Baylor_scaffold_56738__gene_126729	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEPRVLCDNGKGNSPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSIKEREPELWVVVISYMDNKDKRQKMVLPNFFSKNIRGNIYLQGSSKSSVSYYVDKLEEDKCFDELCEKIRVKRDRIYNMEIISLSDDE
SRS017521_Baylor_scaffold_56738	SRS017521_Baylor_scaffold_56738__gene_126730	F078006	MGDNILRKAADELKKAGCRVFAWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLETALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
SRS017521_Baylor_scaffold_56978	SRS017521_Baylor_scaffold_56978__gene_128455	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLIVSHTKYVNDGIPVDKLSRSKKLIYIDLQNMGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLETLDLSSCYLDRYIKEFNDLPKLKTLNITPAPSDMWNYFDINTLPFFEVDKINPNITDFYFLSDWMNGERRTGWNDDNMSGRGLEHLTGFIAANSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE