7000000481: Human stool microbial communities from NIH, USA - visit 2, subject 765074482 replicate 1

Overview

Basic Information

• IMG/M Taxon OID: 7000000481
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053032 | Ga0030576
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 765074482 replicate 1
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 156808270
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067720	Metagenome	125	Y
F073656	Metagenome	120	N
F099269	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS047014_WUGC_scaffold_44360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1290
SRS047014_WUGC_scaffold_45533	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	1047
SRS047014_WUGC_scaffold_77567	Not Available	1572

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS047014_WUGC_scaffold_44360	SRS047014_WUGC_scaffold_44360__gene_63344	F099269	VQVGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRDRRCTPV
SRS047014_WUGC_scaffold_45533	SRS047014_WUGC_scaffold_45533__gene_65220	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHNYLLDPSTVTEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGAVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAA
SRS047014_WUGC_scaffold_77567	SRS047014_WUGC_scaffold_77567__gene_124081	F067720	IMASTTYEHPGGVTEMYAVQEQFRHVTKMVCARFLDLTKTYRLGNVPVMVRNAGQLPQPFWLGASCGGGSCGAARCAART