7000000410: Human stool microbial communities from NIH, USA - visit 2, subject 763961826

Overview

Basic Information

• IMG/M Taxon OID: 7000000410
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052958 | Ga0030524
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 763961826
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 111496612
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068855	Metagenome	124	N
F073656	Metagenome	120	N
F088914	Metagenome	109	N
F092228	Metagenome	107	N
F101355	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1671092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	675
C1686507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	803
C1730803	All Organisms → cellular organisms → Bacteria	1945
SRS019030_Baylor_scaffold_27392	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	7638
SRS019030_Baylor_scaffold_38938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1581

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1671092	C1671092__gene_131471	F088914	CRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKALEMDVK
C1686507	C1686507__gene_136030	F092228	FNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKTIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADRCDCDELLATKN
C1730803	C1730803__gene_149904	F068855	VEAQGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSNLHYHVNVSAALSEGGATW
SRS019030_Baylor_scaffold_27392	SRS019030_Baylor_scaffold_27392__gene_54468	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEVDPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQTQGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
SRS019030_Baylor_scaffold_38938	SRS019030_Baylor_scaffold_38938__gene_79514	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQLPQPKGAGAVFPYVLPLCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFHKKLLPYVLFSFLKFI