7000000300: Human stool microbial communities from NIH, USA - visit 2, subject 159814214

Overview

Basic Information

• IMG/M Taxon OID: 7000000300
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052823 | Ga0030589
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 159814214
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 96220883
• Sequencing Scaffolds: 20
• Novel Protein Genes: 22
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F039147	Metagenome	164	N
F041208	Metagenome	160	N
F042910	Metagenome	157	N
F045105	Metagenome	153	N
F047125	Metagenome / Metatranscriptome	150	N
F051935	Metagenome	143	N
F056623	Metagenome	137	N
F057385	Metagenome	136	N
F058154	Metagenome	135	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1832884	All Organisms → cellular organisms → Bacteria	1285
C1848454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2526
SRS043701_LANL_scaffold_10863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	598
SRS043701_LANL_scaffold_12981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8244
SRS043701_LANL_scaffold_14322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	14931
SRS043701_LANL_scaffold_15949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10527
SRS043701_LANL_scaffold_16781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2326
SRS043701_LANL_scaffold_1756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	15273
SRS043701_LANL_scaffold_1873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	8216
SRS043701_LANL_scaffold_21315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	13104

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1832884	C1832884__gene_136562	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFKPERFGITHLWFSSGFSHIGYGEYHTIKGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD
C1848454	C1848454__gene_140857	F059982	MTMRHMTRLLCLMLLFSLITFSCPLAEETDAPTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDADPAAALPILMQDFDPKTSETMDFDAQPGFCILGGVVNDAFDDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENVSMDGAAVYVAEDAAATASPEA
SRS043701_LANL_scaffold_10863	SRS043701_LANL_scaffold_10863__gene_20961	F089053	CRAKRALFGFDVRSGCVVDECRPAKGCIRKWLYIFANGQLKLSTAEEVNVKNMEVSL
SRS043701_LANL_scaffold_12981	SRS043701_LANL_scaffold_12981__gene_25391	F056623	MKSTEEMLQAAVQQLQTAEQARLTSETGPARRQLLHLLYAREAAALQSMTLVRAEIPAAQKRDWKPLIFPFAAAVLNLGALALWLTLPNCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADETEFRRRLVEVEGRIALDAQTIEALFAQESVTIVSTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYTPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
SRS043701_LANL_scaffold_14322	SRS043701_LANL_scaffold_14322__gene_28061	F068856	VKDSGASAEGNVLAAAHAVLGKERKGMKRLTSILLALLMLVGMALAEETPDAALGDWYALPSDETVLRLTLREDGTFFFGTEGISGIEGKWRKTTDGEYNLAYTNRSSSLLDVIMSMVDSQAPAPDMTMTARLTESGLDVFYGSTAEGAVVHMARDAEELRTERTPRTDTPLEAFAGTWTMETMFLGTMQLTYTPEMGERQVFCTIDGLTMFPGAGLESFPEGTSFPLTFEDGVLRTTIPLTVQMAASSALVKEIVVDYDLTFFQTADGSLYATLRLSDVPDNPTTMFLLVPMEKE
SRS043701_LANL_scaffold_14548	SRS043701_LANL_scaffold_14548__gene_28543	F045105	MSDKLKRVLDTNLAGLHVTDAQVNAVLRRVSQDEQRPRVIRWQAIAAVLLVLVLGAGVLLQTGILSDDSPQLTADVTRQGDFLTAAQVKKLLASAADLQFSVDEEAISALMTQVEKDGGCSLSTLLEILCPAGSSLGQWDIRAQVALSQTLERIGYQGILPGMTREPLSTEITAQDALARAVAYIRTNDDPQADFTNLDFYRVGIRFLSGVYDGTCEGAYYCVNFDALDAFGTTYEVAVNAEDGSICRMRRERGAGSNHTADEVTRGFRRIFGYDMRTWTPMQLRVYILALSRADHSSMQTVHELFLSVGRDGFPDVPAEALTREEAIDAALAIQGGSSSDVLAAEYLAGASGDFWKIAIRQPNAPSGQSIVYLELNGLTGTLLTTTYSGNLYGLPQEFFPSQLLSTLDRTDFSHGVPAVDAETAQSAASAAIERQYQRNMAEEGYTCFIESDFEDTAGGFSYYTGGGVVIFTKDAQNTSQGDIYWAALNWYGEVLDVGWNRNPLDAARFTLLMQGYLPPIYQRETVQQLQALLTGSQTDEAGLRQMKTDGTLPLFNALLALEVAPDASTKSTADDVTAAALKSLNAHLCYENSSFLVYREDGELIWHFWLSTDMGYFLMDVRDSDLSVVDSVQIPSFCALRTSILLPVRVWNTLAENLRVTIFYRDANTQPGIVYGMYANHIVQRYVDLYGANILRWDQATLRSFQSAISISGSYFGDWSVACLCQTIYPDVPDYAISQEVAAEYAARALGDDDYSLRGGVLIDPGEGDPIWKVTLDYPDGRSFNAEVDCRTGAIRTLRQQDTRVMPFYTDYLDFPDDGEYWFRNFVLDEVIEQVRTQMTGRYGNNV
SRS043701_LANL_scaffold_15949	SRS043701_LANL_scaffold_15949__gene_31538	F075480	MNKTKQEKWQRAYGDTPDSFRQRVASSLPKGQETRHVAFPRRAMVLAAALVLVLTTAYAAVVTHTELVWNAGHPIENEADDHLGLLTGKAGTSGDSLTIGGVTFTVQDGIYSPETGQLFASAVISADESVQLVGVESDMEWEVRAVTPVSEKLDPSGISWAEWAEQNGKTLLPVRMEIRGSEQFPNIPMFCDFLTQNPDGTVSVGFQVDLSEEDVSHLKSCEVQLECRVGAFGKDGKATQWQKEILTATITFK
SRS043701_LANL_scaffold_16781	SRS043701_LANL_scaffold_16781__gene_33247	F073574	MLLPAAVRPYAADVDDTASRVRCAIALNGSQDLRIQLCGRLKRGLFGRNQLLADGDVLCVALHQPDGDVPLFDSRCDGYANVLDGKQPPAPIPLHPAICPKCRNAAFQVDLSFEYPDAEEVSAFANPGDAFTWIWISMRCTRCHAVFRGDLECD
SRS043701_LANL_scaffold_1756	SRS043701_LANL_scaffold_1756__gene_2076	F051935	MKRILTFLLAAALLLTSLSCALADGTSPIVSDGLTELKSKRLIQIVEDEIGEGWTLYQPNGREYEENFSSLVNLREMHFLPLVAWKGNQLRLLILRRQGDLWKVSEQNDCALMRYGWTLHNFSAMGYGNSDWADIYFYFLDENQKEWELALHLSDTNVSYFDMIYVPEKYGTIIVFYYDCELKFLFDAPFYFQLNYDIKPAESYSFDVKDFDLATCPLSMQEFLVPAVVTCGEEGAGLYIMVQQDIQPILTLVDGTAIEAIPQKWERDWTIVYYQGNYLFMKTEYVTFSE
SRS043701_LANL_scaffold_1873	SRS043701_LANL_scaffold_1873__gene_2312	F058154	MKNRTFQRLFPLLRMGSILLAAVLFCAALIGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRYFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDAPRHDVTLYTLCPLLYGGALAVLFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMEERFIASPMATARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGTAIRQVMFRMVDYALPAYAVATLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIES
SRS043701_LANL_scaffold_21315	SRS043701_LANL_scaffold_21315__gene_42654	F041208	MRKILAMLLSVMLLLTAAVAETSAPYAPETVLPLVANNRPYRDFARGAISSSEDAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMRAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEAISSYIRRFADLNGFVEVADYAREEVTTFGDYAVAVTVQVTLDSTPYRFTMRLDMMAFTSVENANLHPTAAQTQRDILLLMRDNLAEKGVDITQTFFAVQTDDADGETKLTGIASFPADAASDAIREQYGELERYTLHYSGCASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARADGTFAESWVSSDTLTENDATPAAPKREPIPTLESYQITLNGTAYTAFAINKVEKGYDAFADIAGTQMAVVDVLTSAAQGVIAEYGVDASDLLCRTVVEYGYRADKGCWQVDFAIPQRDMADDAYEVEVDDKDGKVTGMWGPQDGNG
SRS043701_LANL_scaffold_22457	SRS043701_LANL_scaffold_22457__gene_45280	F029444	MDVLGQLTGFELEDLMTWTVSNLQRPFREDFSLEKSGIIAEKGSQIFGCRFVGFDG
SRS043701_LANL_scaffold_26256	SRS043701_LANL_scaffold_26256__gene_54609	F087213	MKKFSSVLFAVLLIFSCWTAATAESTDAVSGAPLDNDIEIVYKEHFDDMVTRYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADAALDARLQAILAACGLNPEDYDISVIRNLSGMPEPITGTNWYCTLIRKGVEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV
SRS043701_LANL_scaffold_29088	SRS043701_LANL_scaffold_29088__gene_62767	F082714	MVVGIRFAADAPVRTVLQAVLPIFSTADVDFLVREYWVCTFGNGLPERRFTAQEMRRALDALTPDEHAELFTIYVLPHNAPSTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSGEQVEAVIETLQKAVEIRSVEAVECETLARWAF
SRS043701_LANL_scaffold_30097	SRS043701_LANL_scaffold_30097__gene_66356	F091068	MNEKNQHVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKRRTVLRVLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMKPAKEEQTANVPRIDVPDGWEGLFFPTFLPDSLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWAEGKRMLRVTSIGLPADEAVLVAQSVKKIFAE
SRS043701_LANL_scaffold_3031	SRS043701_LANL_scaffold_3031__gene_4950	F047125	MDVALLLMVLGVMLSGFWAADALDHMRKEIIRQEGKRRGWW
SRS043701_LANL_scaffold_31019	SRS043701_LANL_scaffold_31019__gene_70876	F042910	VAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTISAAGKISFQGLTLAPGAAIRIHHNAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEAGSAAFVSGRCKGRYC
SRS043701_LANL_scaffold_31313	SRS043701_LANL_scaffold_31313__gene_73162	F039147	MRARRLLILLMMLLLLPQAQAEQLTLYTRPNNVDEATPFQLRPTELSICSVTRAMGGVVVLANDYNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYSMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMANLSCLNVSYRDLETDKVYTYPASLTRMYVCGSVLAISVMQENGIKVVLVDLTDGAIREIADESLEAMYEWADGELLLWRLEGSTNEISRTSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEEPVVTFPAANVDIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPKVILAQETLAKSAMNAASLAARMSASADAPDILRLGLTPNTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGVYRDAVTRDGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVHDWIGYCQAENIPLRFDHPVFREMMAALEAMRTDKIEQANQQVNEEISDYRECLIWTEAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTTNADLVGKLLAQVIADQEATAKCVLLADYDEPIEDSYYLIMVSDYEKTLTELRRQQENAPAWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFNALVSQVHQGEISLEEFVGEADKLIEGLEQ
SRS043701_LANL_scaffold_31395	SRS043701_LANL_scaffold_31395__gene_74160	F073573	MPTIVSFYQRFPNEAPPLNLSAFDRTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSEGMLFQVRRMELRMGDTTYAILPDNVQQYTMRGETDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLTAAQKKAIRRFCMDCEESAITYQPAFLWYKDYCTKA
SRS043701_LANL_scaffold_31395	SRS043701_LANL_scaffold_31395__gene_74161	F101192	MQTEPSDKEGRNMTYWGWLLVGIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQLAKAAPTSITPCGEDTIRRWVSERYQIALRFNRYDICLGVEEEIDG
SRS043701_LANL_scaffold_4824	SRS043701_LANL_scaffold_4824__gene_8542	F057385	MKKLLAVLLSIMMLAMPLTSMAENSVWDNAARQETTITIHDLNADLVAALGGDDTTMAAINDLLAALSLTGYQQGDEAGFDLNLSGKSVLGMASLTTAAEENQLMYVSSALLGGVIAVNSKDVEAIREKALRATMKMSGQSDEEIDKAIEESKEQLSGNAEYTALMEASANLSSMTEEQLMEELTQADTTAFMTMMNEILSGAEMAEVTEQPGDCDAAKNYVKVTVPPEKLAEMTKALLEMIHSVPSIGAYMDALFSAADTSWDDLLKELDEADLYADDIVYEYWMTEAGELVRMTASVKINNGGEEPLPMSFTMTRNTADGVATWLVTIKSAEDTAATLTFAGDLENFTANLTAYAGEDSVEINVSGKGVGTDSSVVDVEIKETVDGVEQGFGVVVTTATTMDGEQGVRKVDVLVRFMGLDVVTITAETRTCDAKDALDVSKAQDLGAMTDSEFQTWFVKVMNNLQNLPMTLLMSLPESMLTLLMGGSN
SRS043701_LANL_scaffold_8747	SRS043701_LANL_scaffold_8747__gene_16652	F077320	MKRKGMHRRCKWVLLAVLLIMVGIAVWRIWQTPRPVVLHRQDAWLSSAEPEMVDTLPDNAFTAELPEEIDGRLLYIRDYSASGHYQIVWEDVSAEAAEVYLNALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTRAEEPTPTPLP