Sample 7000000187

7000000187: Human stool microbial communities from the National Institute of Health, USA - subject 158499257, visit 2

Overview

Basic Information
IMG/M Taxon OID	7000000187 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052692 \| Ga0030548
Sample Name	Human stool microbial communities from the National Institute of Health, USA - subject 158499257, visit 2
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	214070692
Sequencing Scaffolds	19
Novel Protein Genes	20
Associated Families	20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	15
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041208	Metagenome	160	N
F042910	Metagenome	157	N
F051935	Metagenome	143	N
F056623	Metagenome	137	N
F058154	Metagenome	135	N
F059982	Metagenome	133	N
F068856	Metagenome	124	N
F070133	Metagenome	123	N
F072366	Metagenome	121	N
F074898	Metagenome	119	N

Showing 1 to 10 of 20 entries

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
C3250080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	781	Open in IMG/M
C3259122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	828	Open in IMG/M
C3269932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	893	Open in IMG/M
C3308648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1276	Open in IMG/M
C3325112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1579	Open in IMG/M
C3348123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2520	Open in IMG/M
SRS022609_Baylor_scaffold_37556	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	4220	Open in IMG/M
SRS022609_Baylor_scaffold_45113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	3707	Open in IMG/M
SRS022609_Baylor_scaffold_65012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11168	Open in IMG/M
SRS022609_Baylor_scaffold_67467	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	6965	Open in IMG/M

Showing 1 to 10 of 19 entries

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Sequences

Showing 1 to 20 of 20 entries

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000187: Human stool microbial communities from the National Institute of Health, USA - subject 158499257, visit 2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3250080	C3250080__gene_282991	F076189	LKKRINHFKTMQCPAGCVICRALFFYFLSPFIKPLLYVEKLQIGTVLPVVPDLYREFSEISTCFDLRAIQSAQKLLHMLCNFHENT
C3259122	C3259122__gene_286124	F056623	DPARRQLLHLLYAREAAALQSMTLVRAEIPATQKRDWKPLIFPFAAAVLNLGALALWLTLPNCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADEPELRRRLVEVEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYAPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
C3269932	C3269932__gene_289858	F095494	VSDPKEKEVQAILQAIDYGHLPPRETQRRLLNIIQAEAARTDAPTDETKIHTCMDLLERLQGEQKPIAPARVDALRQHIAAAHQKNERKRQKRKKIIAAAACSAAAIAVAFAVSHPLLWYENWTTADEQQHFVTSHEIAIEMLETAVADPTLPSGDTVEVQSIAALDALIGRKTGIPEMVNGQWELQHRYVNFTRSGIGISLMYVNAADAQQTIVGVINLISNPQYMMLSFEQSYEGTIQQFDGLNFYITENINKPVALWQGDDKLLL
C3308648	C3308648__gene_303453	F077319	MLIRNATLQMSATERTCMDVRVMNGCVWEMGVALVKGLYESEIDLHGDVLMPGRMLETPVPAADEKTLRLLCRRLYREGVRYFVADCPADALLRVQNRPERRGALPVTALPNPEPLRSGTGMPLTRWTAAGEFVGMMDEHSGD
C3325112	C3325112__gene_309208	F074898	PPNCAVVPLTKRTKCCILYAAKAFVLYRKECFFMRKILSLLLILALFLPCALAETPQGIDLALTSTYGDGLSLRLTAGLGETPFCSLTLPSGQIDLAFSPDKGLCVQSGGQWAQLLVEGHPVDAALLTTPLKLLDGRSPSEALGLLAEDVNKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRMAASVLGKIYSMEYLDGLNFSDIYHHLLASVVQSSEVARAYRSAMRGYLLSNFRLSGQIGIDKGELLFSQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQAGSNFSLRLDNENANVFALNANVFTLESTPDYIRVKIYYNCYTLTITPATDGLDIVAQARTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFHLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVISDTIGTIELTQLLDGLF
C3348123	C3348123__gene_317714	F058154	MKNRTFQRLFPLLRMGSILLAAVLFCAALIGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGAGAFVRIQAPAQSRLRYQPYLLPPEDAPRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMEERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVAMLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIES
SRS022609_Baylor_scaffold_37556	SRS022609_Baylor_scaffold_37556__gene_57254	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPELFRPDTLPCRLGGGVCFGMDGLDAAILRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP
SRS022609_Baylor_scaffold_45113	SRS022609_Baylor_scaffold_45113__gene_70036	F101193	MARKCTEYHYFKHTYWDAMARYNWTRCPHCGKLCKPSRFKAATVLVPIEFVIFVVCIFFRNSMNDAIGWFTAWLLFMLLLFLPHYIYVRFFMPYETLSEDETRKFRDLQEH
SRS022609_Baylor_scaffold_65012	SRS022609_Baylor_scaffold_65012__gene_105931	F072366	MLDILAIKADVYQLERQGKRLPVYRYLREVWQKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQEFLLDVISWGLQKYRTKKRFLWQICYYVNAWATFYYIFGREITQEDVEQWKKTLFEEAKERYPDSLLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNNMDQAVQSYFDDAMTWYRDNGRKLLEAKKQDE
SRS022609_Baylor_scaffold_67467	SRS022609_Baylor_scaffold_67467__gene_110711	F076064	LKKTIPGQSLENLFYLQYDLPSEASFHATTEEAKRPDELYMQKLLPELNRLGLQPRHIVANDEAYYAMMKGVTLFTSEAEKLMLTEDYFSARRQIRLCAPDLKRRNEAKRPPKPVLKFY
SRS022609_Baylor_scaffold_70654	SRS022609_Baylor_scaffold_70654__gene_117227	F070133	MKEEKRMKRLLGLLMAVMVMMGGMAGAEASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEIWMELFDSVGTSLLSAKLGEFDPNGEQIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTIKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSISAGE
SRS022609_Baylor_scaffold_74437	SRS022609_Baylor_scaffold_74437__gene_125380	F068856	VKDSGASAEGNVLAAAHAVLGKGRKGMKRLTSILLALLMLVGMALAEETPDAALGDWYALPSDETVLRLTLREDGTFFFGTEGISGIEGKWRKTTDGEYNLAYTNRSSSLLDVIMSMVDSQAPVPDMTMTARLTESGLDVFYGSTAEGAVVHMARDAEELRTERTPRTDTPLEAFAGTWTMETMFLGTMQLTYTPEMGERQVFCTIDGLTMFPGAGLESFPEGTSFPLTFEDGVLRTTIPLTVQMAASSALVKEIVVDYDLTFFQTADGSLYATLRLNDVPDNPETMFLLVPME
SRS022609_Baylor_scaffold_76397	SRS022609_Baylor_scaffold_76397__gene_129522	F102166	MEETWRISPEMRAFLMKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQADIGAV
SRS022609_Baylor_scaffold_79127	SRS022609_Baylor_scaffold_79127__gene_135622	F078003	VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNHRFLESFHKQMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDALGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREAYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPYTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQEKLSGQ
SRS022609_Baylor_scaffold_81954	SRS022609_Baylor_scaffold_81954__gene_142464	F101191	LLISHHPASAECLQLGEGMLLCGFDLDKALSSRDPLDCMAEAVADDTKRIGTTCGGGVFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEMTERVTTLTPKQTRKPLARLCWIGTTSRGLLVIELCNPLCISGASLTSVPDGAGRLPFTFLAQNDRPGDVNLPARLYWWKEDTHDAA
SRS022609_Baylor_scaffold_81954	SRS022609_Baylor_scaffold_81954__gene_142467	F042910	LLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQFPAMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITALTVSAAGKISFQGLTLAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPESADDLLLRPGVLNEIRVEASAAAFVSGRCKGRYC
SRS022609_Baylor_scaffold_85537	SRS022609_Baylor_scaffold_85537__gene_151824	F059982	MTMRRMTRLLCLMLLFSLITFSCPLAEETDAPTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMTEGRITLVRGDSRVVAMVISRVPDEDPAAALPILMQDFDPKTSETMDFDAQPGFCILGGVVNDAFDDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENVSMDGAAVYVAEDAAATASPEV
SRS022609_Baylor_scaffold_89228	SRS022609_Baylor_scaffold_89228__gene_164558	F051935	MKRLLGLLLAAMVMMGGISCAVAENTNPIVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAENLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWMLQNFSAIGYGNSDSADVYFYFSDENQQSWELVMELGDANVSYFSLIYNAEGYGITEIIMSYDCGMKFQVDAPDYLQLSYEVDPVEEYSCRVEDFDLATCPLSMQELLVPAVVSCGEAGAELYIALQQNIQPIFVLADGEAIEAIPQRWQRDWVIVCYRGNYLFMKTENCKMEE
SRS022609_Baylor_scaffold_89476	SRS022609_Baylor_scaffold_89476__gene_165512	F041208	MRKILAMLLSVMLLLTAAVAETPAPYAPETVLPLVANNRPYRDFARGAISSSEDAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMRAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEAISSYIRRFADLNGFVEVADYAREEVTTFGDYAVAVTVRVTLDGTPYRFTMRLDMMAFTSVENANLHPTAAQTQRDILLLMRDNLAEKGVDITQTFFAVQADDADGETKLTGIASFPADAASDAIREQYGELERYTLHYSGRASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARADGTFAESWVSSDTLTENDAAPAAPKREPIPTLESYQITLNGTAYTAFAINKVEKGYDAFADIAGTRMTVVDVLTSAAQGVIAEYGVDASDLLCRTVVEYGYRADKGCWQVDFTIPQRDMADDAYEVEVDDKDGKVTGMWGPQDGNG
SRS022609_Baylor_scaffold_90780	SRS022609_Baylor_scaffold_90780__gene_172476	F082714	MVVGIRFAADAPVRTVLQAVLLIFSTADVDFLVREYWVCTFGNGLPERRFTAQEMQRALDALTPDEHAELFTIYALPHNAPGTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSEEQVEAVIETLQKAVEIRSVEAVECETLARWHF