7000000182: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765640925

Overview

Basic Information

• IMG/M Taxon OID: 7000000182
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052687 | Ga0031065
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765640925
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 49067769
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Morganellaceae → Providencia → Providencia rettgeri	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043235	Metagenome	156	N
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051214	Metagenome	144	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F081456	Metagenome	114	N
F084342	Metagenome	112	N
F098763	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2056322	Not Available	599
C2057448	Not Available	609
C2062548	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	661
C2065054	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	691
C2088408	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1436
C2094736	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2783
C2096010	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	5493
SRS054653_LANL_scaffold_15150	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2130
SRS054653_LANL_scaffold_19406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12304
SRS054653_LANL_scaffold_26136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Morganellaceae → Providencia → Providencia rettgeri	554
SRS054653_LANL_scaffold_33755	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	922
SRS054653_LANL_scaffold_34158	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1496
SRS054653_LANL_scaffold_35325	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4923
SRS054653_LANL_scaffold_5291	All Organisms → Viruses → Predicted Viral	2177

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2056322	C2056322__gene_76157	F022002	MSRRLALTLGLLLALLLSLPAYAQDGQSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIEETQAGSNDVDYTVTGLNYARRSTKTVYMFFYKGHLRRIVFIFNDLDVLKQIESELEDKYGTMAEGVGTSKKKSKVVFDAFTRLWVVRGFKYEGHFGFKDAYITYSDEELDRARSAEKE
C2057448	C2057448__gene_76610	F053092	ERPPITAPRHDEAITLVKEWRPFTDQLMQSDQGLILCLTHALLVLGALILESAEMEDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEEVLIGLQDALITTELVAELADTTVIASSDLTDPIVKDTLSEARLLDVFVSIVSYKLRFFRHK
C2062548	C2062548__gene_78518	F084342	TQCGAKLFLLGGYLAVPIRRPFFAQSLKKTLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE
C2065054	C2065054__gene_79470	F018385	MMTDLINSWLPYQELSLDKDRDPVTDDEIIYGNNVKHFTLTVYSPEGRVNKYWNARILKDQAGYCRVACPRENKILCFNWVNWTTYMFTHDGLNELVFMPDARRRTVSQLSFDHVPMKEV
C2088408	C2088408__gene_88878	F043235	TRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
C2094736	C2094736__gene_92114	F098763	MDRRASLRILSPALYLATKLFEAVVRTTISYDPSDEVEGKGRMNAVPTAVDE
C2096010	C2096010__gene_93143	F055792	VEIAGEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVIAEAMVTGALERDLAIDCALEEVRPVFVDKGDDGTEASTTWGRYTLETLQKEGYILFEGSMLPCEARRVDPRCSVKSLDLEPRIIGEAIEPVALPDVTRLDESITLQGIGGLRDLLMTPDVSETDHLQTSREEGTDLLQLMGIIARKYQLFHTFVS
SRS054653_LANL_scaffold_15150	SRS054653_LANL_scaffold_15150__gene_11246	F081456	MFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLIMTAIGFLLCAITVILYTISAD
SRS054653_LANL_scaffold_19406	SRS054653_LANL_scaffold_19406__gene_15301	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTIWYFRLVDGGVMTFSAREWEQKDDVNHLTTIWMKPSLYDIERKAS
SRS054653_LANL_scaffold_26136	SRS054653_LANL_scaffold_26136__gene_22122	F051211	MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHILSLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYTEIDKWLADTRAHQSS
SRS054653_LANL_scaffold_33755	SRS054653_LANL_scaffold_33755__gene_30476	F018385	MMDEYENQCGPYKEHSIEKAQDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGYSRKTISRLYYEEVK
SRS054653_LANL_scaffold_34158	SRS054653_LANL_scaffold_34158__gene_31075	F081456	MFEEPPIYYILISLIFLIVFGAVAFATWLIWLTPISFMAKLVMTAIGFLLCAITVILYTISAE
SRS054653_LANL_scaffold_35325	SRS054653_LANL_scaffold_35325__gene_32803	F051214	MPGKIIANHTHLRIDTEFIELSDCFEAFRRGVEYKEKNDVDDILVICNTTDLIEYQLKNGDSVIVTHDPIHRIMVMRLFLHDENIALKPVYIYNNREYQIACEFLRQILHDKIDLKKEWL
SRS054653_LANL_scaffold_5291	SRS054653_LANL_scaffold_5291__gene_3000	F027205	VSSRLIVSADDILKAVKESEEFEKKALTEARKRDRAEGKEPREALYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK
SRS054653_LANL_scaffold_5291	SRS054653_LANL_scaffold_5291__gene_3001	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNGKEYYDYWSAREGRPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDLKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF