7000000071: Human stool microbial communities from NIH, USA - visit 2, subject 764062976

Overview

Basic Information

• IMG/M Taxon OID: 7000000071
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052543 | Ga0030599
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 764062976
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 171838322
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F055775	Metagenome	138	N
F056682	Metagenome	137	Y
F067844	Metagenome	125	N
F074964	Metagenome	119	N
F090484	Metagenome	108	N
F097493	Metagenome	104	Y
F099269	Metagenome	103	N
F099406	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3249383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	529
SRS065504_LANL_scaffold_41948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	668
SRS065504_LANL_scaffold_42600	Not Available	5125
SRS065504_LANL_scaffold_46795	Not Available	22020
SRS065504_LANL_scaffold_48364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4440
SRS065504_LANL_scaffold_49529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	2541
SRS065504_LANL_scaffold_52291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	946
SRS065504_LANL_scaffold_5756	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	19179

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3249383	C3249383__gene_196955	F099269	RGDAEASFFVHGVLVSVQVGELLLLDDLGDRAGGASVLASATGDAGILVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV
SRS065504_LANL_scaffold_18902	SRS065504_LANL_scaffold_18902__gene_33251	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLT
SRS065504_LANL_scaffold_41948	SRS065504_LANL_scaffold_41948__gene_78014	F056682	MKMQSRVGKVVNQSVGQSEMYPASFWAFPSKNRSTFPIQELRKNREDQEVL
SRS065504_LANL_scaffold_42600	SRS065504_LANL_scaffold_42600__gene_79372	F090484	MIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVNLPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIKDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVGKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDSKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKTYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNINTTVDNDKELDGESVFKDIPFEELSFYNDTYLYPISQYSSL
SRS065504_LANL_scaffold_46795	SRS065504_LANL_scaffold_46795__gene_88780	F099406	MAEVGYNSKFEGLEVDSRLENVVQAAPGTSSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSGYLDLSIFSGNSGSLDENSFAKVLDAYNNNITLGKLDGDYYHLNYFLEGNDFENNFKLKIVFASFANADSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEHVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA
SRS065504_LANL_scaffold_48364	SRS065504_LANL_scaffold_48364__gene_92375	F029444	MGVSAQLTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKGSQIFGCRFVGFDRPKKRRPFSISKRALAAASE
SRS065504_LANL_scaffold_49529	SRS065504_LANL_scaffold_49529__gene_95131	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKVVCKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFIKFSLYSKVYKDSKVDKEKGIEAKTADWCADNVVYGEEYKPFGFATAETLETKKSAKWLVKETDEYKATYVAVKIKSYSIRTIAKCVNEYLTHESNQQ
SRS065504_LANL_scaffold_52291	SRS065504_LANL_scaffold_52291__gene_102198	F097493	MYKFYSKNGTAQFYERGVKIDGTVYGIQKDSDILRIKRGIVNDKFAETDDNFDMDTEIAKIQHTSITFKQPTSEQLSQIQAKTFDSMSDMKQYVQSIMNGELTQDEINAMLMLQIAELKAGVDGE
SRS065504_LANL_scaffold_5756	SRS065504_LANL_scaffold_5756__gene_9179	F055775	MAQIAQQDNLVIEVATTATALDDDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGESPKYTIDIIKADSGAVEAIELN