NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300034481

3300034481: Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB21_Tmax_1102 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300034481 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0134626 | Gp0331156 | Ga0315299
Sample NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB21_Tmax_1102 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size41722784
Sequencing Scaffolds36
Novel Protein Genes39
Associated Families29

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available19
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium PRS22
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1
All Organisms → cellular organisms → Eukaryota → Sar2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Western Arctic Ocean, Canada
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationCanada: Western Arctic Ocean
CoordinatesLat. (o)74.0136Long. (o)-139.5971Alt. (m)N/ADepth (m)479
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000103Metatranscriptome2242Y
F000344Metagenome / Metatranscriptome1257Y
F002753Metagenome / Metatranscriptome532Y
F003320Metagenome / Metatranscriptome494Y
F003733Metagenome / Metatranscriptome471Y
F006550Metagenome / Metatranscriptome370N
F006551Metagenome / Metatranscriptome370Y
F007171Metagenome / Metatranscriptome356Y
F010768Metagenome / Metatranscriptome299Y
F011082Metatranscriptome295Y
F021393Metagenome / Metatranscriptome219N
F024444Metagenome / Metatranscriptome206Y
F025846Metagenome / Metatranscriptome200Y
F028427Metatranscriptome191Y
F030135Metagenome / Metatranscriptome186Y
F036429Metagenome / Metatranscriptome170N
F042932Metagenome / Metatranscriptome157N
F050311Metagenome / Metatranscriptome145Y
F052659Metagenome / Metatranscriptome142N
F059333Metagenome / Metatranscriptome134N
F062154Metagenome / Metatranscriptome131N
F062832Metagenome / Metatranscriptome130N
F063612Metatranscriptome129Y
F065861Metagenome / Metatranscriptome127Y
F067833Metagenome / Metatranscriptome125Y
F072260Metatranscriptome121Y
F074005Metagenome / Metatranscriptome120N
F076161Metagenome / Metatranscriptome118N
F098669Metagenome / Metatranscriptome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0315299_00721Not Available2179Open in IMG/M
Ga0315299_01524Not Available1746Open in IMG/M
Ga0315299_03115All Organisms → Viruses → Predicted Viral1307Open in IMG/M
Ga0315299_03583Not Available1237Open in IMG/M
Ga0315299_04889All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium1089Open in IMG/M
Ga0315299_05779Not Available1010Open in IMG/M
Ga0315299_06473All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1960Open in IMG/M
Ga0315299_06479All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium960Open in IMG/M
Ga0315299_06947Not Available931Open in IMG/M
Ga0315299_09137All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei821Open in IMG/M
Ga0315299_10599Not Available767Open in IMG/M
Ga0315299_10897Not Available757Open in IMG/M
Ga0315299_10973Not Available754Open in IMG/M
Ga0315299_11792Not Available728Open in IMG/M
Ga0315299_12444Not Available710Open in IMG/M
Ga0315299_12637All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium706Open in IMG/M
Ga0315299_12987Not Available697Open in IMG/M
Ga0315299_13201All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium692Open in IMG/M
Ga0315299_14500All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium PRS2662Open in IMG/M
Ga0315299_15697Not Available638Open in IMG/M
Ga0315299_17321All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium608Open in IMG/M
Ga0315299_17478Not Available606Open in IMG/M
Ga0315299_17498All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria605Open in IMG/M
Ga0315299_18047Not Available596Open in IMG/M
Ga0315299_18368Not Available591Open in IMG/M
Ga0315299_19452Not Available576Open in IMG/M
Ga0315299_20617All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia560Open in IMG/M
Ga0315299_21128Not Available554Open in IMG/M
Ga0315299_24914All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium PRS2514Open in IMG/M
Ga0315299_24927Not Available513Open in IMG/M
Ga0315299_24979All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium513Open in IMG/M
Ga0315299_25715All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium506Open in IMG/M
Ga0315299_25789All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae505Open in IMG/M
Ga0315299_25902All Organisms → cellular organisms → Eukaryota → Sar504Open in IMG/M
Ga0315299_26034Not Available503Open in IMG/M
Ga0315299_26114All Organisms → cellular organisms → Eukaryota → Sar502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0315299_00721Ga0315299_00721_1113_2177F006550MQARINKREIDYKGQQLWLNPVDKTVYATDGAPTYSFGEVNGTPIYNYNTHFDAVKTAKSDKLGTSYFHDAFVDPEFKSLAEDYVSDVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAGKNLAKEVAVPNLLISIDTVTKFTGLEKLDEGMRARVKELPYTRSTFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVLAITETNTAQAASAAWDTFVSSTDRSTGDPTVDIGIASLNIEGSGVGGKLNRVGMHQLTYAKFTGNTFLRGVASNGPRDYSYEPGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDK
Ga0315299_01524Ga0315299_01524_1_519F021393QETVKSGFDTLTEVVQSIAETQKATQETLGGLENRLKALETPTDLPLSPKGTAAAQDVGAKVIVPDTYQSNSKQVGLDSDRQGELKPASDKGGLKMQQKSDDTEFVEKTQHTFTTETPRPNAALETVDKSIKDESMILKDARAEGYEGLSQVARNILSGKYYTPSDDIVGAY
Ga0315299_03115Ga0315299_03115_260_682F062832VKALETPTDLPLAPAGTTGSDNDVGADVTTPAQPYPQGDQAGLDDDRVDDNKPANDAAPSMQEKPLNKGVPKLVAKSQHTFSTETPRPNAAIEKAGGSQPDFSPILKDARSEGFEGLSNVARNILKGKYYTPTDEEVRGF
Ga0315299_03583Ga0315299_03583_715_1236F042932IDTLADVVQSIAQSQQGVEKAVSEISERVKALETPSDLPLSPKGTQGGDDVGAKVTVPNDPYPVGDQVGLDSDRKNNNPPKKDPAGLKMQEKPVNKAEEDSEPEMIQKSEHEFSTETPRPGSAIETVDKSFTKDFSPILKDARAEGFEGLSKVAQNILSGKYYKPTPEEIGGF
Ga0315299_04889Ga0315299_04889_394_1089F003733MKKALRTKICTYAIALLASIGFATPTLAGSSEFSGLFIAGHAELNVVAIPGTHTAGGAGVDSENGTQNVETTEGTIGGFAPTAGYEIGFNLPLGDTFFVTVAFADGGGKSAAIAKVDDANGISDVSLHASNPSWWYIAPAISIFDNSAVYFKWGQAHADLTAIGDLTGSPGNIEGDMWGIGTTSIASNGLFLKTEAGAIQYSEFKITGLGGDANTTVEGKPLVGYGHISIGY
Ga0315299_05560Ga0315299_05560_15_548F036429MATVKSVEITNLDATPRTTLEAASAGGKLRVWMDTYAAGTGDLDDDDIIILGQVPSNAKIVSLMIYNDDLNSGSGTHNVGLYNGPQAYTISGTKTDAAAVIDEDCYVTNSTAFRAAVTEPVELLAETRNINAIANFVWEDGGLSEDPKVPLRIAVTMSATGTAIAGDITIVVKYTID
Ga0315299_05779Ga0315299_05779_2_607F042932EQVDQVEITKSDEEQASYENTVAKSIDTLADVVQSIAQSQQGVEKAITEIHDRVKALEKPTDLPLSPKGTQSGDDVGAKVTAPNDPYPVGDQVGLDSDRKNSNPPKKDPAGLKMQEKPVNKAEEAVESYEPEMVTKSQHEFSTETPRPGSAVETVDKSFTKDFSPILKDARAEGFEGLSKVAQNILSGKYYKPTPEEIGGF
Ga0315299_06473Ga0315299_06473_28_273F076161MKSINFLSRCPKTGFRAFAEKPVAKSLLLPQFGGQKMSPQGASIPNRLTAWTIPQIAVDPKERSNLLSSPTNPDAPTGKPV
Ga0315299_06479Ga0315299_06479_296_958F003733MKALRTKVCTYAIALLVSIGFASPSLAGSSDFSGIWIAGHAELNVVAIDGTHIENNTNSNGGKVTSGTIGGYAPTAGYEVGFNLPLGPVFFVTVGFADGGGKSADIVRANDAAENADVVVTAKNPEWLYIAPSISIFDNSAVYVKYGQADADLTATGDVTGAPNNISGDMWGIGTTSIANNGLFFKTEAGAIQYDQFTITGIAGSSTAIVEGDPLVGYGHV
Ga0315299_06883Ga0315299_06883_46_933F000103MKKVASVLIVLCTLSQAAKVTPVQKVIQLLEGMLENGKKEKHDEQVQFAAYKQFCDDTSTEKKRSIAEANEQIEVLKADIQKYTADASRLTKEIAGHDSDIACWEGDVKASTNVRNIEKSDYDATHKDYSESVDALQRAIVVLKKQASDKKQASLVQVKALTGLNLIPAEAKKALDIFLQGSDDDEGLAVSAPEANAYEFQSSGIVEMLEKLLDKFVDERTQLEKEEMNSKQAFDLLKQDLEAQIAQANSDRDRKAEEKAKTLQDKANAEGDLTDTTTTRDADQKYLDDLTAECEL
Ga0315299_06947Ga0315299_06947_684_929F003320MAYAIDNPVKKVSQMGASNSLWYYTDGDAIGTIVGDDYFILSYAELKAGDVIMVNSGGSNAVIDTIIVSVNDGGTNLNTVIE
Ga0315299_09137Ga0315299_09137_693_821F000344MRPKHPRAAESGVGKHTARESEGAKACAIGKERVANAHPHKLA
Ga0315299_10599Ga0315299_10599_625_765F030135GPENREELATLSSFTDIWHSTFAGCQFPDAILPDKEAFDLVAGPLN
Ga0315299_10897Ga0315299_10897_3_623F042932IVDQEVEITKSDEEQDSYENTVAKSIDTLADVVQSIAQSQQGVEKAVSEIVERVKALETPSDLPLSPKGTQGGDDVGAKVTAPNDPYPVGEQVGLDSDRRSKNPPKKDPAGLKMQEKPVNKAVEVEPEEEVEKSQPEMVTKSNHEFSTETPRPGSAIETLDKSFVKDFSPILKDARSEGYEGLSKVAQNILSGKYYKPTPEEIGGF
Ga0315299_10973Ga0315299_10973_630_752F063612PKSVAGGSPGDDAASVAEESGLKTPRRGAASEEDVYSPAL
Ga0315299_11792Ga0315299_11792_135_728F042932VDQEVEITKSDEEQDSYENTVAKSIDTLADVVQSIAESQQGVEKAVSEVIDRVKALETPSDLPLSPKGTQGGDDVGAKVTAPNDPYPVGDQVGLDSDRKNKNPPKKDPSGLKMQEKPVNKAEEDYEPEMIQKSEHSFSTETPRPNSAPETVDKSFTKDFSPILKDARENGYEGLSIVAQNILSGKYYKPTPEEIGGF
Ga0315299_12444Ga0315299_12444_157_588F024444MLLIGAGALLLLAKWGFGNIPNPLPTVGRAVAKTADELTGGLQKDRTESWTEYLFEFDVPFSDKRLPIAPGLVRDRGGAYSTGGPMDPGGQMADVPWVAMDVAEPDQPWGKYFFEIDLPGVPAYDVRDAPADLYRSTIGRVLR
Ga0315299_12637Ga0315299_12637_288_704F050311MKALRTKICTYAIALLTGIGFATSTLAGSSDFSGIWIAGHAELNVVAIDGTHTQTTATSEVGQGTVGGFAPTAGWEAGFNLPLGDTFFITVGFADGGGDSAAIAKFDDSKGVADVTLHASNPSWWYIAPSVSVFDNSAV
Ga0315299_12987Ga0315299_12987_574_696F030135ELATLSSFTDIWHSTFAGCQFPDAILPGREAIDLVAGPLN
Ga0315299_13201Ga0315299_13201_227_511F025846MAQMKLIVVVAAVPMVNLHVLMDLASLAAGHVTAMVTVLMAQTKQTVLLHHVKTKVYGIVAMASVFQHHMYVMAQVNSVTQDGVLTVPMAQMKA
Ga0315299_14500Ga0315299_14500_1_174F065861KISLIYSKNSFIFNLPFRVVLFMIRGEIIGRNNVSAAIPTLEEGLLHKNKLVLNCLT
Ga0315299_15697Ga0315299_15697_8_637F006551SQTGNYDPWAANATIDRDSGTAFDCTVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGESLVQIDVNGIQSFKGTGVGIHVDSIYGIPFIPSKDAPSNASDTTEVGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPGYPFVNNAFVEKGVFRTMGETVCRHFRSQGKIRDIKL
Ga0315299_17321Ga0315299_17321_3_608F003733GSSDFSGIWIAGHAELNVVAIDGTHTTGAQTSGGSEDADIAQGTIGGFAPTAGYEVGFNVPVGDTFFVTVGYADGGGESAAIAKSKSSDAAGTNTTVTLHASNPSWWYIAPSISVFDNSAVYVKIGRADASLKAIGNVTGAPGNIKGNMWGIGTTSIADSGLFFKTEAGAIQYDQFKITGIGGKSNVIVEGDPLVGYGHVSI
Ga0315299_17478Ga0315299_17478_409_606F074005MRYEVSKMVQIKTIDELEALYYGYNRNLLRKADAPATTSTAGVFNAIYGAYAWAQLNLEANAFGIM
Ga0315299_17478Ga0315299_17478_6_428F062832VKALETPTDLPLAPAGTTGSDNDVGADVTAPAQPYPQGDQAGLDDDRVDDNKPANDAAPSMQEKPLNKSEPKLVAKSQHTFSTETPRPNAAIEKAGGSQTDFSPILKDARAEGFEGLSNVARNILKGKYYTPTDDEVRGF
Ga0315299_17498Ga0315299_17498_2_256F052659GNPGTETRSAVFIDGRLISSLPELNYQSIDKLQQGGVPDKVSWMKPSLRGRLRLVKLQAQERNLTIEDLNQSIRSKWVILWTEV
Ga0315299_18047Ga0315299_18047_122_595F028427MFVGFRMRVLQLTKGQGNPQDWVQFSMQAVAYAILTNTLLVFFVAIFTGKNPEVDKKTGDVKELDEETANSFSVPMLATVFNVFRYLAFLGLYVGFGAVVTGVFMFEPPAGVWSGEIPPISPAVACTVTLSCTFFLIYFLLAVSRTYTQYSGSATTSF
Ga0315299_18368Ga0315299_18368_3_590F042932QVDDSENYAEEVTKSEEQISYENTVAKSIDTLADVIQSIAESQQGVEKAISYFDERIKALETPSDLPLSPKGTQGGDDVGAKVTTPNDPYPVGEQVGLDSDRKNKNPPKKDPSGLKMQEKPVNKAEEEVSEPEMVTKSEHEFVTETPRPGANLETIDKSLSKDYSPILKDARSNGFEGLSNVARNILNGKYYKPTA
Ga0315299_19452Ga0315299_19452_3_548F072260ENWKRFICKPVYGMEGIDAKFFEPSHKRKLGKYLERCMKKYPGIVIQKEIPFFGNSRKSPELRMYYVGNKYQYSACANENTVVRPRQEGGGFDVPLENLKRRTRSILKRLPPIVMKGKKLPRLLTRLDMGYIVDGNYNPFVNEVEFVPSWYSEDCAHHPDRLIDVSLGDQMVKITKMFVN
Ga0315299_20617Ga0315299_20617_371_538F067833MVQTKLIVNLHHVKTKVYGIVAMANVSQHHMYVMDQVNSATLAGVLTVPMAQMKA
Ga0315299_21128Ga0315299_21128_30_233F059333MLRTHPGWNALKDEFDKRCTDEMDRIVNGTLFDQESIAKHHISIGRVRAWKEVLEFPENVEKFGPPR
Ga0315299_24914Ga0315299_24914_335_502F067833MAQTKLTVLLPHVKTKVYGIVAMANVFQHHLYVMAQVNSVTQAGLQTVPMAQMKA
Ga0315299_24927Ga0315299_24927_1_513F002753SVNDTVSDRFTPAAFEIESVNNTVSDRFTLAAFEIESVNDTVSDRFTPVDFATESVNDTVSDRFTGAVFDIESVNDTVSDRFTLAAFDIESVNDTVSDRFTPVDFATESVNDTVSERFTPADFAIESVNDTVSERFTPAAFDIESVKLTDSDRFTLAAFDIESVNDTVSDR
Ga0315299_24979Ga0315299_24979_1_234F062154NSVANGVREPSVVNVRPEQPVNSVVNARPERLVNRVVNGVRAPSVVNVRPEQAVSVDRSPVAVVVREGQVVLCGCSL
Ga0315299_25715Ga0315299_25715_297_428F067833VKTKVYGIVAMANVFLHHMYVMAQVNSVTQAGLLTVPMVQMKA
Ga0315299_25789Ga0315299_25789_3_305F007171IAPFGKEDTAKELQDHAAKTQDTLVDAVENAEVAEIKRAVFRALTRLRAATIKEFDTIARLETQAIDAYNDAHHYRAENPLTHLHEDEAPVETDKLKSFH
Ga0315299_25902Ga0315299_25902_8_502F011082MTAQSSKLNTEIKNLNSEIAKNQEALAKATALRQKELAEFNAEEKDLLQSIGALKSAVVVLSKHHEALMQVPSEQLLNIAALVGHQFTKHASLLQSFVTPSQRKAVAAFVQAPADFFDAERTTLLQSSYAPQSGQIFGILKQMKETFETNLSNSQKEEMAAQEAY
Ga0315299_26034Ga0315299_26034_281_502F098669METATRSRKQKWRLKEAEGLGRKRRVEEAERRELHESDQGLDPGHGLNPGRKVRRIDQAMEGSPEIVPAKIRKK
Ga0315299_26114Ga0315299_26114_73_225F010768MKEVLNGGYNVHPVPPPNSEIKERITRRYERKRIKIEKLFTLGYTTSGDP

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