3300034349: Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_18

Overview

Basic Information

• IMG/M Taxon OID: 3300034349
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0135941 | Gp0396357 | Ga0370504
• Sample Name: Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_18
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 549182281
• Sequencing Scaffolds: 47
• Novel Protein Genes: 49
• Associated Families: 46

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
Not Available	14
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → environmental samples → uncultured Gemmatimonadota bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Geofilum → Geofilum rhodophaeum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Peat Soil Microbial Communities From Wetland Fen In Alaska, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → fen → peat soil
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Alaska
• Coordinates
  • Lat. (^o): 64.9141
  • Long. (^o): -147.8344
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000676	Metagenome / Metatranscriptome	941	Y
F002541	Metagenome / Metatranscriptome	550	N
F004436	Metagenome / Metatranscriptome	438	Y
F005497	Metagenome / Metatranscriptome	399	Y
F006412	Metagenome / Metatranscriptome	374	Y
F006433	Metagenome / Metatranscriptome	373	Y
F008316	Metagenome / Metatranscriptome	335	Y
F010627	Metagenome / Metatranscriptome	301	Y
F015810	Metagenome	252	Y
F016977	Metagenome / Metatranscriptome	243	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0370504_0000039	All Organisms → cellular organisms → Bacteria	27300
Ga0370504_0003733	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3431
Ga0370504_0005083	All Organisms → cellular organisms → Bacteria	2996
Ga0370504_0005808	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2833
Ga0370504_0006701	Not Available	2655
Ga0370504_0008432	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2411
Ga0370504_0018932	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1675
Ga0370504_0019924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1637
Ga0370504_0023389	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1525
Ga0370504_0030452	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1355

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0370504_0000039	Ga0370504_0000039_14697_14984	F030615	MGKKKFRIICYNKTEVSFYETKVKTWIGWISFTVFYKTDIVHILSVPSVQKSLAYERIYHYCEVKGYKLKDVDITEINLNKSKRWIFFQRVYSDR
Ga0370504_0000547	Ga0370504_0000547_5689_6210	F028047	MESDMKEVIFRNDWHQLGEKQIVDLFNEHFTGVTIQPGESIIKRLKMQEVCTLEILEDRSSSTVYRIRQTDEVFQIYQPDGKLFSYTTEDYYLQKPIDELVKEYSKKDPIFKIEKVSDFKEIVHHLKSPKFRALFVEGTYDKMEWIEDPPEDITQIEKLLRKMGAFYSSYVKK
Ga0370504_0003733	Ga0370504_0003733_448_609	F022562	MKTADKKTERNFDLLISKLSENEVLNVQAMSHIRGGSADGEGDGHEVIISMPR
Ga0370504_0005083	Ga0370504_0005083_1314_1478	F091042	MVLWALRGAILGKGPWLLIRSEKNLNRLRNSPRKRALVSHELALKVTASPAVLI
Ga0370504_0005808	Ga0370504_0005808_849_1442	F075999	MMPNTRNTLLGTATLALAIVSLSPPASADPVKPKYYFRVSSIECRDSKVIPLAKELLEAEVATRPEFTMDLGKLSEDAQIAELRKQGMQGLQVSLRITTLKKEIKPPAPGKRDQQMSIEVKLGVLGHTIPGNKLLFTGDGDASLMGEFTERLKDKEEERFMRTALSSALKQAVTTAVAKLTNTTLEDRKSAKKAKKP
Ga0370504_0006701	Ga0370504_0006701_675_1040	F091904	MPDEAPTPETSAASARAARRQEDAARFIDRFAVLTGIRMQSTSIEGLPREFLARAVTAPDILVREYGYEFEPRTRNALCRYEPGRQPERWTFGRLLEIRGFGVFSLLDVLEVLAKHGIKS
Ga0370504_0008432	Ga0370504_0008432_592_1074	F086545	VPPPTVFDGAYQGLLVGGTAGLATGYLFARRDGWDSSNDWKPLVYGAGIGALAGSVVGLTLGIVDMSQSRPGRNGYVMRDGLYGAGLGAVLGGIAGGLAAISSKKSEHVLLGGSIGVLSGACFGMGIGFVEGYHKYSPTVAPVQHADGSVTFVPAVTGRF
Ga0370504_0018932	Ga0370504_0018932_315_548	F074504	MKAQKQPELSLKALEAEVLEEGREWTRQRLQQRLQAQAEQAGAVFPPPGPAATAADVAHGRGQNNAGRHLRAGSAKR
Ga0370504_0019924	Ga0370504_0019924_1263_1466	F006433	MADTDYRIVHREDDSFAVEIKRPGALPQTAAGFTSEADAQGWIAQDQRLRVAADPFATPAGRRHRGF
Ga0370504_0023389	Ga0370504_0023389_181_537	F028258	MAKLPAKVDTQGRLRVTKAQRRDILAAFERSGESLPRFARRLGLKYSTVARWVQLRRSKSSGRKAPLRLLEAIVESSPAMGTDASLVLQLPGGVRVEVADEKEAALAAIMVRALAKPC
Ga0370504_0030452	Ga0370504_0030452_527_733	F087946	MLSKQRIPDLIVIVVLGLLLVLLNYTGHIGIMSDYPFIFLLVMYFVGRSVTWYIINQHMDDEDGGGDS
Ga0370504_0031390	Ga0370504_0031390_1_297	F070832	MGLPALAPVVMVFARHPDSFIVTLNFSLICQIRDSGSGQILQLRQFNLSPVPIAIGIAKIAQWWLARRDYFLPKVLGLVSADGATNVYSLNRRAVIFKP
Ga0370504_0031632	Ga0370504_0031632_3_218	F055973	MATATPPVSKHAVYPRDEIAKLLAPPETEHPGTKLRRILHEARDKGSFVHTAGAYDAYTAALMTRLGFKALY
Ga0370504_0031956	Ga0370504_0031956_1092_1262	F066903	MKRRFRQKQEIAPKDDPEKEKGLSEDSAEENIDIDEIIREIDTHVNPPVDERPQGE
Ga0370504_0033852	Ga0370504_0033852_3_425	F088758	MLNKPDASLGCSCSRRPDWATIEDDSVMRWQAVDIAEWEELRQCPECAAMWLAVWPEESESPPILCRPRPAGVRKLRDIDHPTTMRPYCMARLEEQLGEIKERKATCLKVNCNRHRLAGTTYCLEHLIAERFGRYLARLTI
Ga0370504_0036207	Ga0370504_0036207_1117_1251	F079368	LTEAGLHKARPELIDVGALVRYDRPLPDLADYDTLLMGPCAGTA
Ga0370504_0037304	Ga0370504_0037304_1_399	F005497	MNMSLKRSHASTRSGSTGSESGAKLERQEFFDELKKHGQTGQMFSPVDISMAIGAGEAAVSRALLGLAAEGYLEKVDVGKYSAAPFLEVPQAEFLKALARASKTDSTRQRDLSEISRLKQNNDVMRAKLLGAI
Ga0370504_0041606	Ga0370504_0041606_847_1023	F100518	MNSTVIMRAAFAALSLTAAIVPVANAANRGRPETTHRQGPYDNTGNGPQQSGLEGGGG
Ga0370504_0050804	Ga0370504_0050804_695_1075	F022279	MFGFLTAQAKDHPDPLQTPKSASAWLRQLPTLDVIGRQQQVMRAFDGMRQSRKPADMSRVAAIEFLDAALGADRRQLIKQYVENIAGSPRLAERIWQAVHEMSQGFIYGYQAALEQALNQSSNPRWK
Ga0370504_0053447	Ga0370504_0053447_3_521	F069625	VNRLAQFLQYTGKVFGLKGLFGRVRDGRVEPRVPVLPLVVCLVLGVVMRIGSYSDLAQQTKSRRRWRHLCGLKDPVAHEIFAYATERMNPEDWRQNQAQVVKELKRNKALESSKINGLLFLSIDANEHFASFSRTCPRCCQRQVEVLDPQGQKVKVTQYYHRYVFAHLSGPKV
Ga0370504_0067659	Ga0370504_0067659_2_652	F004436	MQLRTVAGVVELKVVYGQDPGDGHWGCPVRELWGLTSHQQLSLALEDKLAFTLTATASYEEAAALAQKWGVPVTDSALHSLTQRLGSRAQAQSQELLKTPPVEREPQRAPTKLAVLMLDGWQVRQRGPGWGKKKTQQNRVEWHEWKTGVYYRHEQSAHTAGGRGVIDDKIVIGWQGEPVEFASRLHWEAQRAGLGRARAKLVVGDGAPWIWNAAQDR
Ga0370504_0068246	Ga0370504_0068246_188_745	F077208	MKTITLLFVVSLLLMSCQQPEKNIISAEFTINKSLLSDSLFASETGFSINPPKNWEKTGSFNSLLQEKILYHSDNKLLAIYKSDTTNCALIISELPESSFEIMKRLLGKTNQSPKQDSIWTNVQSSIFKYKTFEIIQTVFQNAELVIFKLVTRRLSESYELDYIIPRSEIDINIQSVESSIATLN
Ga0370504_0074059	Ga0370504_0074059_40_216	F050029	MAKMVIHWKDKDIPNMEIKDAAYKGGDGSIIKISSADKEYWFNWQECWFLESIPSQSK
Ga0370504_0077522	Ga0370504_0077522_436_633	F031313	MSRRNSLGAEQKTYLPVGRQGASASARQPKDAVPVDKTVRVPQYLINETEVTLIDFGAGYKAFTT
Ga0370504_0089569	Ga0370504_0089569_1_555	F042358	MNDERFSSYMALDGVHLDGLIGSAGVLRFDWPERRTYIQHFDGISAAHNVSVAHNGQLALLGNFSQQIVVLDISNPDKMQMVGRQATMYFEECAYRLRANTHHLWEADNQHFLGAIGDHIYRFDVDDLKGPVNLGPHRLENAHELRWDASRRYIFIGDLGPERFDVRQICVFDLHEPDPAKRARI
Ga0370504_0094286	Ga0370504_0094286_252_446	F029425	VSRRNSLGASKKRGTSASADSANDAVPVDETVRVPQDFINVTEIKGIDVGNDYKSVLALAKALN
Ga0370504_0103372	Ga0370504_0103372_542_784	F082719	MAARETAFVEAAQAANRAIWNGINQLVALQREWNALDYGATLDPVDGIPAAAVGAVVFDTANALVAVLGAGHATNMAKLL
Ga0370504_0107275	Ga0370504_0107275_491_703	F040199	MFLVTEADASEIRAIFERDGELSAAIELRRRFPGIADNAKARQCARSIAGWRPPVEPPATVTRLRPDKRS
Ga0370504_0109539	Ga0370504_0109539_408_764	F021886	MSWETIRNLIHDEWVILLLLLVWSVAGVAVICERLYALWRVRAKSELFKTRVIEAVEKGDLAKAAALCETSNDPLGEVFGRGLRVFAKMPHKTTEAVNSQRLVAIAGFKRYLWALGTVG
Ga0370504_0117401	Ga0370504_0117401_50_607	F077208	MKSISILSLFILLSISCQRPGKKVISAEFKVDNSLLSDSSFASKSGFRINPPKNWLKTESYNSVLQKKVLSHLDNKLLAIYKSDSTNCALIISELPESNYDIIKGLLSKTSSSPKQDSIWTNVESSLFIYKSYEIIQVVSQNSELVIFKLLTHRLSELYELDYIIPRSEININMQSVESSIGSLN
Ga0370504_0123961	Ga0370504_0123961_1_171	F029425	ASKKQGTSASVDSANDAVLGDETVRVPQHFINGTEFKSIDVGVDYKSVLALAKAIN
Ga0370504_0140951	Ga0370504_0140951_2_181	F084125	MSHDKAEAKKKGLIALSAWAGAGLLFVSHWPVIGIATVGGAVFLTYRWFMFRAKRGMRF
Ga0370504_0141364	Ga0370504_0141364_288_680	F054133	VLAAGCATPPAPPRVDEGQLLALGFKVLVAQTTVQQQWVQSLAPGQIRAVQRNGKKYFIYPDAARNQIYVGGPREFDAYQALEPATRVGTQDAANQAAAYRGKQDAVMREATARDLSDPFLGATWYDLGW
Ga0370504_0149887	Ga0370504_0149887_530_664	F044511	MRLPITSAPTKRAPDAGESGAIPSLFLRLSIFPIGRRSAARPSAG
Ga0370504_0159754	Ga0370504_0159754_3_263	F057474	MNELAQFLTYIVKVFSMNRVARGVRSARPEARIPTRSLFLSLLMGVVLRFGSYNDIAKQTKRRRWQHLIHWSARISEDVFYYVSERF
Ga0370504_0160011	Ga0370504_0160011_463_627	F008316	MILLSVLLAFGFIRDFSGVLSGVVPAMRVVHSGIHLLAGVSVAVFFYVFHRSGS
Ga0370504_0161043	Ga0370504_0161043_90_599	F015810	MNKVLVTAACVLALCAGAVQAQEVSGTLMANGKSAALTYAVAQEIDSATEKGYLDVVVVLSDRRLGLADARDPDRLEAMSRKDGLVALVLRLDPDAKLLSAAPLHPAFTTFIRSGAFVRWQPSAYDEKNVAGRVHTDGVQAEFRQQWSYDLKFTAPISLDPAAKTVPRK
Ga0370504_0165053	Ga0370504_0165053_3_635	F000676	CRDLAAKDINDTEREGGAEQIEVYAVAGGPRVRARPVNEQDSLAASISSFSDPMWQVKDRSVAGLRIAASGGIGQSLALGALVAVRQSDVTEWVLGVVRRLNKVSNDEVEAGVSIIAEHLVPVQLHTRRDPREELAGIIVDGIDMSTMGARFDGLYLPPPSRPDKPLTVKTLIVPTSEYAEGRNVLLTTGRSVYTVALRHLVEQRAEWSWA
Ga0370504_0189333	Ga0370504_0189333_2_319	F077984	YRAVRAERLQADFDRRAGIQTQGLDPPPRAAEAGCLQRAWSALTARVGPLKEAFGQLVSSTVSDVASLWISLRQAMNSVSKMLCFLSQHHQISLLGDYRCLRPPT
Ga0370504_0194392	Ga0370504_0194392_182_376	F064436	LVGVAVKVTEVPAQTGFADGDIETLTGNIGFTVMVTVFEVAGLPVGQVALEVRTQVTRSLFAGV
Ga0370504_0198778	Ga0370504_0198778_3_191	F096293	MVLISTPFITYQDIKVKEIDLLEDAWGINSEFCDVIALLRQVNPVPERCLTTNLIKNIRKKV
Ga0370504_0211473	Ga0370504_0211473_374_568	F064436	VGVVPPLVGVAVKVTPVPEQIVVADAEILTLAGRFGLTVIVTVFEVAGLPVAQVAFDVKTHDIVF
Ga0370504_0221051	Ga0370504_0221051_1_534	F020393	MNIIYADLARRGRFGVSCKPAFDAKRGGSDGWALALAGRAEAAWGMQEAMAWADAGSEVFVISQLGYTRGIIAAMRDLLGPQALAEEDKMLLGAQVELGLNVAQGAKTSFMSGGLHGLVNFGTQQAVSNATTAVVYNIDQSFRVRARPTVAVTFQGAPGTRYVAHGTTYKPRDRDASI
Ga0370504_0242353	Ga0370504_0242353_2_532	F006412	TFVIGVAGLVATSIWQYRQSQTAMRQAESEQKIAATKADNEWRIARAEILAKNMSVLSTQGANTADQRFGVLLSLTRGAILDPELAVSYALELGKDNAGYMHDVLAATERKNYKQLEQAFKLTCLQRYGVRRDADICKDDKLSDRSEAIADLIRDELEALDASGDGKAAAQGALSLL
Ga0370504_0250603	Ga0370504_0250603_27_389	F002541	MIARYRELAAACGAADVPGNTSLSISRGSLAKRCVAWLKLLLTTPADTSQAPAMREFVDALALFPSLFDLDPTARSRRARLTWLLTHDRRLDASTREAATALIEACEHLGLLLWPDAETA
Ga0370504_0258505	Ga0370504_0258505_5_343	F010627	MVSKITPVSGEPKKDESEKYKDVPTVTVAADKQKALLTEGKAVLTAPLWEPEAKSIKCKVVINPEGKIGELETGAQLCEAIQWDKFLYKPTLQGGKPVNVKTEVEVTFEPRK
Ga0370504_0261785	Ga0370504_0261785_270_476	F032937	MKLVAIKALAGFNYVRPDAVIAVGATDPSKSTIYMTGGVAIPAAEPAKDVIAKLEAASDPAPSPEETK
Ga0370504_0263999	Ga0370504_0263999_1_513	F016977	LIHYYGTDAKLRVFRYERWIPAKWMDLHKLYMRAQELGVDRVPVALGSAVPNATQWTTEQEYLFVLLIHQLNTGNLSPAEVDWASAQLRAWSRKLQVDAVPRSPEGFFVDIAGKVGLVRRTGNDSGSMLRYVDTTPVAEQLERAIQSLRQSEATDQGPAGPINQQRVAILE
Ga0370504_0278104	Ga0370504_0278104_87_446	F032393	MLAKTAHTPDDNDRTAIVRIKTLRLPDDVSDEITRRARMKGVPDADYYRLLIERGLLLETVELAMEKPLPPAYWGLCEAVLETRNILRSLAAAREHSTIPKAQVQARDELQRMKQDGDQ