Basic Information | |
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IMG/M Taxon OID | 3300034141 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0136120 | Gp0356274 | Ga0334958 |
Sample Name | Biocrust microbial communities from Mojave Desert, California, United States - 54SNC |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 321930701 |
Sequencing Scaffolds | 30 |
Novel Protein Genes | 33 |
Associated Families | 21 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 2 |
All Organisms → cellular organisms → Bacteria | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Oscillatoria → Oscillatoria nigro-viridis | 1 |
Not Available | 7 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp. | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae | 1 |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 6 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Tychonema → unclassified Tychonema → Tychonema sp. LEGE 07203 | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera chwakensis | 3 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Tychonema | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Soil And Biocrust Microbial Communities From Mojave Desert, California, United States |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | desert biome → desert → soil biocrust |
Earth Microbiome Project Ontology (EMPO) | Unclassified |
Location Information | ||||||||
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Location | USA: California | |||||||
Coordinates | Lat. (o) | 34.3778 | Long. (o) | -117.6098 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001042 | Metagenome / Metatranscriptome | 794 | Y |
F005545 | Metagenome / Metatranscriptome | 397 | Y |
F005599 | Metagenome / Metatranscriptome | 395 | Y |
F005661 | Metagenome / Metatranscriptome | 393 | Y |
F007252 | Metagenome / Metatranscriptome | 354 | Y |
F007533 | Metagenome / Metatranscriptome | 349 | Y |
F011201 | Metagenome / Metatranscriptome | 293 | Y |
F011588 | Metagenome / Metatranscriptome | 289 | Y |
F012744 | Metagenome / Metatranscriptome | 277 | Y |
F017778 | Metagenome / Metatranscriptome | 238 | Y |
F018295 | Metagenome / Metatranscriptome | 236 | Y |
F035160 | Metagenome / Metatranscriptome | 172 | Y |
F038520 | Metagenome / Metatranscriptome | 165 | Y |
F042710 | Metagenome | 157 | N |
F044000 | Metagenome | 155 | Y |
F044877 | Metagenome / Metatranscriptome | 153 | N |
F058553 | Metagenome / Metatranscriptome | 135 | Y |
F078146 | Metagenome / Metatranscriptome | 116 | N |
F083444 | Metagenome | 113 | Y |
F085294 | Metagenome | 111 | Y |
F093150 | Metagenome / Metatranscriptome | 106 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0334958_000737 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 10495 | Open in IMG/M |
Ga0334958_000927 | All Organisms → cellular organisms → Bacteria | 9164 | Open in IMG/M |
Ga0334958_002827 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Oscillatoria → Oscillatoria nigro-viridis | 4680 | Open in IMG/M |
Ga0334958_003807 | Not Available | 3922 | Open in IMG/M |
Ga0334958_005411 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp. | 3191 | Open in IMG/M |
Ga0334958_013273 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis | 1872 | Open in IMG/M |
Ga0334958_019969 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae | 1479 | Open in IMG/M |
Ga0334958_022627 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 1377 | Open in IMG/M |
Ga0334958_022968 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 1365 | Open in IMG/M |
Ga0334958_025687 | Not Available | 1280 | Open in IMG/M |
Ga0334958_025835 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Tychonema → unclassified Tychonema → Tychonema sp. LEGE 07203 | 1276 | Open in IMG/M |
Ga0334958_031822 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 1139 | Open in IMG/M |
Ga0334958_032476 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 1127 | Open in IMG/M |
Ga0334958_034562 | All Organisms → cellular organisms → Bacteria | 1087 | Open in IMG/M |
Ga0334958_037956 | Not Available | 1033 | Open in IMG/M |
Ga0334958_041748 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 981 | Open in IMG/M |
Ga0334958_051612 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 876 | Open in IMG/M |
Ga0334958_070344 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 743 | Open in IMG/M |
Ga0334958_076087 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 713 | Open in IMG/M |
Ga0334958_077118 | Not Available | 708 | Open in IMG/M |
Ga0334958_077336 | Not Available | 706 | Open in IMG/M |
Ga0334958_080674 | Not Available | 691 | Open in IMG/M |
Ga0334958_081741 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp. | 686 | Open in IMG/M |
Ga0334958_085552 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 670 | Open in IMG/M |
Ga0334958_109311 | Not Available | 592 | Open in IMG/M |
Ga0334958_114503 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera chwakensis | 578 | Open in IMG/M |
Ga0334958_122782 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera chwakensis | 558 | Open in IMG/M |
Ga0334958_137798 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Tychonema | 527 | Open in IMG/M |
Ga0334958_141259 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera chwakensis | 520 | Open in IMG/M |
Ga0334958_144257 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 515 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0334958_000737 | Ga0334958_000737_29_694 | F005661 | MQFRVAKTSGAEHVAREFGYHSGPITPEMVNEAARTAKILDLQKQLRTAYNRHDARIRANKVELERLTLEAIEGGLTDKAQIDKYVGKAIVAGAKHDQHIVDLNQQLQHELNLVKVQGASTQTLANTGFRQRLLLIKANHTAKGQIQLHSFAQSLKAIQASPQQAIDMQQKRANFNAYINAKDFDPIPAVSGVSARGNSSDTGNNSKGFLHGLFDFFSGRK |
Ga0334958_000927 | Ga0334958_000927_8758_9135 | F001042 | MTFTGDCPEGRSQDLTCAGADGKIVIDKMLVNKLTELLITSIYSVHTSRCSEIFLTSLDLHLAQYSISNKNDTAHREFSEKSALLLESYQEDVPKSLGKAESCLGEAIDLINLIVSASEAGVNNE |
Ga0334958_002827 | Ga0334958_002827_4075_4311 | F058553 | MAQTRAVLPARFVPLADELLATTGASDYSTLIGILLSRYGKHLLNTWEIANCPQTAVVQQPIASVSIEQPETFTPMEF |
Ga0334958_003807 | Ga0334958_003807_298_684 | F001042 | MTTSHLIGGNEASDVPKDFEADADDTIVINKLLVNKLTELLINSIYSVHVSRRSEFFLTSLDMHLADFSISNKNDIVCREFTEKSSLLLESYQKDVPKSLGKAESCLGEAIDLINLIVSASEAEVNNG |
Ga0334958_005411 | Ga0334958_005411_91_429 | F007252 | MKKSKQKSKDGRGGARPGAGGGVRWKHGRTKLVRLPVALLDEILEVARYMDQNEGRLPLFASPVITSAHPSESLSGEELEEFFAKKKAQKLAQQVMAGDEWVLVSDETFQAF |
Ga0334958_013273 | Ga0334958_013273_1411_1872 | F044000 | SSSGGSLDQIRSAAKRLKTWGLTETPEELATRALAIIDSAVHPRASAIVLDTAMGPEMIAARSAASAEDPRLVERVVLADEETSVGTLLVGRRSDGHRYNRQELAAIQEIVPSLAAALRVSRGRYSRESHMQQRLDEMAARLAQLEGGAAKPA |
Ga0334958_019969 | Ga0334958_019969_1174_1404 | F042710 | MAENSGENCERSQIFTASSARDCRYVDVLKARAEELGLDSDCVGDKRKRETWEAVLETHGEEKPAKPQFVVKPNQP |
Ga0334958_019969 | Ga0334958_019969_42_383 | F011201 | MKKSKAKSKNGHGGARAGAGRRWRWKHQPVKMVRLPVAFLEKILELADYMDQHDGQLPFAEASVITSGHSSKTLSGEELKEILGKEKAGKLAQKVMVGDEEVLVSDETFRQQH |
Ga0334958_019969 | Ga0334958_019969_594_1142 | F083444 | MLNNMSEVFSCEEVALENTHLLPEYGKKVIYFVTAMQGESKTFLYIGFTINLRRKFKNHHRKIEFEFLNRIGYQIKISWIVLPNGIREKEGHVVQRCYIQAFEPKLNEDQNSIATVQAEELKKQFENWEQRRYEYLKKEIENWEQSGDDKDTIIKKIWEVCKQPFDDKHLILSPSKSQKTAV |
Ga0334958_022627 | Ga0334958_022627_2_325 | F001042 | MTTSHPIEGNFASHFLKDSEAEADDKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAENSISNKNNKASHEFTEKSSLLLESYQKAVPKLLVKAENCLE |
Ga0334958_022968 | Ga0334958_022968_797_1213 | F001042 | MLNQAVIIKLMTTSHLIEENFTSDFPEDSKAEANEKIVIDKLLVNKLTELLINSIYSVHISRRSEIFLTSLDMHLAENSISNKNNKASHEFTEKSSLLLESYQKAVPKLLVKAENCLEEAIDLINLIVSASEAEGDNG |
Ga0334958_025687 | Ga0334958_025687_1_366 | F001042 | EGNFSSHFLKDSEAEADDKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAQDSISNKNDAARRDFTEKSSLLLESYREDVPKLLGKAESCLGEAIDLINLIVSASEAEVNN |
Ga0334958_025687 | Ga0334958_025687_786_1088 | F038520 | MKYPKIKHGGSRAGAGRPHKYQAGETKLVRIPVAYVDKILRVVSYMDANDGQLPPDIAFATEGEDFSCPGYDASRELPYPDFDGYNKRHRNSTFGKNFHK |
Ga0334958_025835 | Ga0334958_025835_508_1266 | F093150 | LFTIKGNLVFMNKLYQKVAFASVCTALSFALVANKEAKAAVFTLTPTLSFSVGDRDAQDGLGDYISGDVPLPVGIINGGGYRQEYRALYEFNLANLSLAPNTVISSAILGVKANNISYGRFAELKMYGYIGNGQADVSDFESGEYLERKYLYTELLNDTIPGIKPSKFFNFNVLPFISQSIKNNDASAGFSLRIDDGYFTANKDASLTIITADVTESVPEPTTILTAAVALGWGGWLKRKNSSQQHKTKSQD |
Ga0334958_031822 | Ga0334958_031822_2_367 | F001042 | GGNFASDVPKDFEADTDNNIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLASLDMHLADFSISNKNDAACREFTEKSSLLLESYQKDVLKSLGKAESCLGEAIDLINLIVSASEAEVNN |
Ga0334958_032476 | Ga0334958_032476_481_1125 | F012744 | MSHRNDCPAGRSQFLTRGSLFKNHAAKVYVLDRITHGTAPEILSRASAACRFESPHTEVSEQKWREYFGLPVMSLSAAAEYYGLSVSELEHHARKKNTYAGGLFESGMLVLRGAALESAREMEHTAGIQQGLVLLPPRAVLHLCLYLRPVPAVAATVNAFWDYVLAEKLHESTAADWYYTSTQHVEIECERIEEQRLLECLTEAKERKLYPYIQH |
Ga0334958_034562 | Ga0334958_034562_105_455 | F011201 | MKKSKAKSKMGHGGARSGAGRLPLWKHRPLKMVRLPVAFVEEILKVAHYMDQNEGRLPFSEASEDLGIISGHPSKSLSGEEIKELAPREKARKLAERVMVGDEWVLVSDETFRNQH |
Ga0334958_037956 | Ga0334958_037956_618_857 | F035160 | VYLTEEYIMSVVQQDLTASEQSMSKAIAQAWLSGVPEGTMIGDMPLPAKPDDLTEEQISDWLEGRAEGFPGGTIPASCS |
Ga0334958_041748 | Ga0334958_041748_2_661 | F012744 | MSQTNDCPAGRSQHLTHGVFFKNHVAKVYVFDRIRHGTALDILSRASAACRFESPDTAVSEHQWREYFGLPVMSLSAAANYYGLNVSELEHHIRRKITYAGGLFESGMLVLRGAALESAREMGHTAGIQQGFVLLPPRAVLNLCLYLRPVPAVAATVNAFWDYVVAQKLHESTSADWYYTSSQHVEIECDRIEEQRLLECLAEAKERKLYPYIQHFGRQT |
Ga0334958_051612 | Ga0334958_051612_746_874 | F005599 | MMRMPTRLHNGEGRVDGEAIDICTHSIRRGSGHGTLEGWFGQS |
Ga0334958_070344 | Ga0334958_070344_48_626 | F005661 | MAHEAARTAKILDLQKQLRTAYNRHDAKIRSNKVELERLTLEAIEGGLTDKAQIDKYVGKAIVGGAKHDQHIVDLSQQLQHELSLVKVQGASTQTLANTGFRQRLLLIKASHTAKGQIQQNGFQQSLKAIQASPQQAIAMQQKRSAFNNYINAKDFDPIPNVSGGSAGGNSSVSNDSKGFLGSLFDYFSGRK |
Ga0334958_076087 | Ga0334958_076087_1_495 | F085294 | EASEAGEVCRLDAGSAGVFTEGDVADVMAPIFNAPVASDRLAERLGAESDLAGVEGDFLGFMPEAGLRVLVPGQAGDAGGLDDQAVPLGVELALDVEGLDLAGFIAAVAPGIDAFEAVGRRLGGGDALERGQQGRLIGLDLGEQGVAAVAGRLKGFFDNGGRLR |
Ga0334958_077118 | Ga0334958_077118_2_181 | F007533 | MTPEYRLERITETIRAIKIGVPISKTLVMLLLEPWPDLYRDAMTREGMGWINLLQAAAAR |
Ga0334958_077336 | Ga0334958_077336_525_704 | F018295 | MFNQAMTIKLMTTSHFIEENFTSDFPEDSKTEADKKIVIDKLLVNKLTELLINSIYSVHV |
Ga0334958_080674 | Ga0334958_080674_157_459 | F044877 | MVTLDHKTLEEIFSLIGDCVDTIINLRHSGVFITSAKRCLLDTGNLELASSTEVSEAALLLDTWLDVVPKSHKEMDAWLQQANAITYLALAPIKLGKSNG |
Ga0334958_081741 | Ga0334958_081741_61_477 | F078146 | MQGESKKIIYVGFTPNLRKKFKDHKRKMEFEFLDRMGYQINISWIVLPDRMREKEGQVIQMCYIRAFEPKLNTYQNTFAAVQVEESKKRIENLEQCKYEYLKKQIENWEQSGDDKDTIIKKIWEAGKERPMVSIGFVH |
Ga0334958_085552 | Ga0334958_085552_50_499 | F001042 | MSPTLQRFFGFILTQVVIIKLMTTSHSIEGNLESDFYKDSETEANDKIVIDKLLVNKLTELLINSIYSVNISRRSEIFLTSLDMHLAENSVSNKNNKASREFTEKSSLLLESYQKAVPKLLGKVESCLEEAIDLINLVVSASVAGGENG |
Ga0334958_109311 | Ga0334958_109311_297_554 | F011588 | MDQQKIYPFSKAFVMKTTFRHMRRSIDISINKTFERLRDFDQNSEAGLEIMETLSTLHICRKMLDDFQKHNPNQFSDKLSNNKEV |
Ga0334958_114503 | Ga0334958_114503_2_460 | F017778 | AKGKTKGKRGGIRPGAGNPYKWKHGETKPVRLPIVLIPKILEIAQLIDGQEYINRVEHEFDDEEGSPKYYNGYYAGQLMYLRIGNDELASEVRNLRKENEVLKAQLMELNNGVLPEPLPDFSNLLFVSEPKPLAKQDRRKKRKGTFFVEKQV |
Ga0334958_122782 | Ga0334958_122782_75_557 | F007252 | EKKVKNNSRKLMNNKVHPFFEDVTLWDFNMKKSKGKSKCGRGGARPGAGGGCRWKHGRTKLVRLPVALLHEILEVARYMDQNEGRLPPSAPPVITSGHLSESLSGEELKEFLAKKKARKLAEKVMCGDERWWSAIKPLQLLIFLMFPQPKKLGQAADEIF |
Ga0334958_137798 | Ga0334958_137798_3_284 | F038520 | KRSKHGGKRIGSGRPHKWQGGPTKLVRIPISYVEQILRVVDYMDANEGRLPTGIAFHTEGENFTMPDYDPSSELAYPDFDGYNKQYRNSTWNR |
Ga0334958_141259 | Ga0334958_141259_2_385 | F007252 | MNNKVHPFFEDVTLWDFNMKKSKGKSKSGRGGARPGAGGVCRWKHGRTKLVRLPVALLDKILEVARYMDQNEGRLPPCTPPVITSGHLSESLSGEELKEFLAKKKARKLAEKVMCGDERVVVSDKTFA |
Ga0334958_144257 | Ga0334958_144257_23_265 | F005545 | MEERNEQAVDDRGTTETGGREILKRLRDQGFDADDEKLAVALGRPVEEVQGWMTGSPEEPVDDDIVMKARGIAKERGIEL |
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