Sample 3300034141

Basic Information
IMG/M Taxon OID	3300034141 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0136120 \| Gp0356274 \| Ga0334958
Sample Name	Biocrust microbial communities from Mojave Desert, California, United States - 54SNC
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300034141 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0136120 | Gp0356274 | Ga0334958

Sample Name

Biocrust microbial communities from Mojave Desert, California, United States - 54SNC

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	321930701
Sequencing Scaffolds	30
Novel Protein Genes	33
Associated Families	21

Dataset Contents

Total Genome Size

321930701

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Oscillatoria → Oscillatoria nigro-viridis	1
Not Available	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Tychonema → unclassified Tychonema → Tychonema sp. LEGE 07203	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera chwakensis	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Tychonema	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Oscillatoria → Oscillatoria nigro-viridis

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Tychonema → unclassified Tychonema → Tychonema sp. LEGE 07203

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera chwakensis

All Organisms → cellular organisms → Bacteria → Acidobacteria

Ecosystem Assignment (GOLD)
Name	Soil And Biocrust Microbial Communities From Mojave Desert, California, United States
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Ecosystem Assignment (GOLD)

Name

Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	desert biome → desert → soil biocrust
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

desert biome → desert → soil biocrust

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: California
Coordinates	Lat. (^o)	34.3778	Long. (^o)	-117.6098	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

USA: California

Coordinates

Lat. (^o)

34.3778

Long. (^o)

-117.6098

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001042	Metagenome / Metatranscriptome	794	Y
F005545	Metagenome / Metatranscriptome	397	Y
F005599	Metagenome / Metatranscriptome	395	Y
F005661	Metagenome / Metatranscriptome	393	Y
F007252	Metagenome / Metatranscriptome	354	Y
F007533	Metagenome / Metatranscriptome	349	Y
F011201	Metagenome / Metatranscriptome	293	Y
F011588	Metagenome / Metatranscriptome	289	Y
F012744	Metagenome / Metatranscriptome	277	Y
F017778	Metagenome / Metatranscriptome	238	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0334958_000737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	10495	Open in IMG/M
Ga0334958_000927	All Organisms → cellular organisms → Bacteria	9164	Open in IMG/M
Ga0334958_002827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Oscillatoria → Oscillatoria nigro-viridis	4680	Open in IMG/M
Ga0334958_003807	Not Available	3922	Open in IMG/M
Ga0334958_005411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.	3191	Open in IMG/M
Ga0334958_013273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis	1872	Open in IMG/M
Ga0334958_019969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	1479	Open in IMG/M
Ga0334958_022627	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.	1377	Open in IMG/M
Ga0334958_022968	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.	1365	Open in IMG/M
Ga0334958_025687	Not Available	1280	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0334958_000737	Ga0334958_000737_29_694	F005661	MQFRVAKTSGAEHVAREFGYHSGPITPEMVNEAARTAKILDLQKQLRTAYNRHDARIRANKVELERLTLEAIEGGLTDKAQIDKYVGKAIVAGAKHDQHIVDLNQQLQHELNLVKVQGASTQTLANTGFRQRLLLIKANHTAKGQIQLHSFAQSLKAIQASPQQAIDMQQKRANFNAYINAKDFDPIPAVSGVSARGNSSDTGNNSKGFLHGLFDFFSGRK
Ga0334958_000927	Ga0334958_000927_8758_9135	F001042	MTFTGDCPEGRSQDLTCAGADGKIVIDKMLVNKLTELLITSIYSVHTSRCSEIFLTSLDLHLAQYSISNKNDTAHREFSEKSALLLESYQEDVPKSLGKAESCLGEAIDLINLIVSASEAGVNNE
Ga0334958_002827	Ga0334958_002827_4075_4311	F058553	MAQTRAVLPARFVPLADELLATTGASDYSTLIGILLSRYGKHLLNTWEIANCPQTAVVQQPIASVSIEQPETFTPMEF
Ga0334958_003807	Ga0334958_003807_298_684	F001042	MTTSHLIGGNEASDVPKDFEADADDTIVINKLLVNKLTELLINSIYSVHVSRRSEFFLTSLDMHLADFSISNKNDIVCREFTEKSSLLLESYQKDVPKSLGKAESCLGEAIDLINLIVSASEAEVNNG
Ga0334958_005411	Ga0334958_005411_91_429	F007252	MKKSKQKSKDGRGGARPGAGGGVRWKHGRTKLVRLPVALLDEILEVARYMDQNEGRLPLFASPVITSAHPSESLSGEELEEFFAKKKAQKLAQQVMAGDEWVLVSDETFQAF
Ga0334958_013273	Ga0334958_013273_1411_1872	F044000	SSSGGSLDQIRSAAKRLKTWGLTETPEELATRALAIIDSAVHPRASAIVLDTAMGPEMIAARSAASAEDPRLVERVVLADEETSVGTLLVGRRSDGHRYNRQELAAIQEIVPSLAAALRVSRGRYSRESHMQQRLDEMAARLAQLEGGAAKPA
Ga0334958_019969	Ga0334958_019969_1174_1404	F042710	MAENSGENCERSQIFTASSARDCRYVDVLKARAEELGLDSDCVGDKRKRETWEAVLETHGEEKPAKPQFVVKPNQP
Ga0334958_019969	Ga0334958_019969_42_383	F011201	MKKSKAKSKNGHGGARAGAGRRWRWKHQPVKMVRLPVAFLEKILELADYMDQHDGQLPFAEASVITSGHSSKTLSGEELKEILGKEKAGKLAQKVMVGDEEVLVSDETFRQQH
Ga0334958_019969	Ga0334958_019969_594_1142	F083444	MLNNMSEVFSCEEVALENTHLLPEYGKKVIYFVTAMQGESKTFLYIGFTINLRRKFKNHHRKIEFEFLNRIGYQIKISWIVLPNGIREKEGHVVQRCYIQAFEPKLNEDQNSIATVQAEELKKQFENWEQRRYEYLKKEIENWEQSGDDKDTIIKKIWEVCKQPFDDKHLILSPSKSQKTAV
Ga0334958_022627	Ga0334958_022627_2_325	F001042	MTTSHPIEGNFASHFLKDSEAEADDKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAENSISNKNNKASHEFTEKSSLLLESYQKAVPKLLVKAENCLE
Ga0334958_022968	Ga0334958_022968_797_1213	F001042	MLNQAVIIKLMTTSHLIEENFTSDFPEDSKAEANEKIVIDKLLVNKLTELLINSIYSVHISRRSEIFLTSLDMHLAENSISNKNNKASHEFTEKSSLLLESYQKAVPKLLVKAENCLEEAIDLINLIVSASEAEGDNG
Ga0334958_025687	Ga0334958_025687_1_366	F001042	EGNFSSHFLKDSEAEADDKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAQDSISNKNDAARRDFTEKSSLLLESYREDVPKLLGKAESCLGEAIDLINLIVSASEAEVNN
Ga0334958_025687	Ga0334958_025687_786_1088	F038520	MKYPKIKHGGSRAGAGRPHKYQAGETKLVRIPVAYVDKILRVVSYMDANDGQLPPDIAFATEGEDFSCPGYDASRELPYPDFDGYNKRHRNSTFGKNFHK
Ga0334958_025835	Ga0334958_025835_508_1266	F093150	LFTIKGNLVFMNKLYQKVAFASVCTALSFALVANKEAKAAVFTLTPTLSFSVGDRDAQDGLGDYISGDVPLPVGIINGGGYRQEYRALYEFNLANLSLAPNTVISSAILGVKANNISYGRFAELKMYGYIGNGQADVSDFESGEYLERKYLYTELLNDTIPGIKPSKFFNFNVLPFISQSIKNNDASAGFSLRIDDGYFTANKDASLTIITADVTESVPEPTTILTAAVALGWGGWLKRKNSSQQHKTKSQD
Ga0334958_031822	Ga0334958_031822_2_367	F001042	GGNFASDVPKDFEADTDNNIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLASLDMHLADFSISNKNDAACREFTEKSSLLLESYQKDVLKSLGKAESCLGEAIDLINLIVSASEAEVNN
Ga0334958_032476	Ga0334958_032476_481_1125	F012744	MSHRNDCPAGRSQFLTRGSLFKNHAAKVYVLDRITHGTAPEILSRASAACRFESPHTEVSEQKWREYFGLPVMSLSAAAEYYGLSVSELEHHARKKNTYAGGLFESGMLVLRGAALESAREMEHTAGIQQGLVLLPPRAVLHLCLYLRPVPAVAATVNAFWDYVLAEKLHESTAADWYYTSTQHVEIECERIEEQRLLECLTEAKERKLYPYIQH
Ga0334958_034562	Ga0334958_034562_105_455	F011201	MKKSKAKSKMGHGGARSGAGRLPLWKHRPLKMVRLPVAFVEEILKVAHYMDQNEGRLPFSEASEDLGIISGHPSKSLSGEEIKELAPREKARKLAERVMVGDEWVLVSDETFRNQH
Ga0334958_037956	Ga0334958_037956_618_857	F035160	VYLTEEYIMSVVQQDLTASEQSMSKAIAQAWLSGVPEGTMIGDMPLPAKPDDLTEEQISDWLEGRAEGFPGGTIPASCS
Ga0334958_041748	Ga0334958_041748_2_661	F012744	MSQTNDCPAGRSQHLTHGVFFKNHVAKVYVFDRIRHGTALDILSRASAACRFESPDTAVSEHQWREYFGLPVMSLSAAANYYGLNVSELEHHIRRKITYAGGLFESGMLVLRGAALESAREMGHTAGIQQGFVLLPPRAVLNLCLYLRPVPAVAATVNAFWDYVVAQKLHESTSADWYYTSSQHVEIECDRIEEQRLLECLAEAKERKLYPYIQHFGRQT
Ga0334958_051612	Ga0334958_051612_746_874	F005599	MMRMPTRLHNGEGRVDGEAIDICTHSIRRGSGHGTLEGWFGQS
Ga0334958_070344	Ga0334958_070344_48_626	F005661	MAHEAARTAKILDLQKQLRTAYNRHDAKIRSNKVELERLTLEAIEGGLTDKAQIDKYVGKAIVGGAKHDQHIVDLSQQLQHELSLVKVQGASTQTLANTGFRQRLLLIKASHTAKGQIQQNGFQQSLKAIQASPQQAIAMQQKRSAFNNYINAKDFDPIPNVSGGSAGGNSSVSNDSKGFLGSLFDYFSGRK
Ga0334958_076087	Ga0334958_076087_1_495	F085294	EASEAGEVCRLDAGSAGVFTEGDVADVMAPIFNAPVASDRLAERLGAESDLAGVEGDFLGFMPEAGLRVLVPGQAGDAGGLDDQAVPLGVELALDVEGLDLAGFIAAVAPGIDAFEAVGRRLGGGDALERGQQGRLIGLDLGEQGVAAVAGRLKGFFDNGGRLR
Ga0334958_077118	Ga0334958_077118_2_181	F007533	MTPEYRLERITETIRAIKIGVPISKTLVMLLLEPWPDLYRDAMTREGMGWINLLQAAAAR
Ga0334958_077336	Ga0334958_077336_525_704	F018295	MFNQAMTIKLMTTSHFIEENFTSDFPEDSKTEADKKIVIDKLLVNKLTELLINSIYSVHV
Ga0334958_080674	Ga0334958_080674_157_459	F044877	MVTLDHKTLEEIFSLIGDCVDTIINLRHSGVFITSAKRCLLDTGNLELASSTEVSEAALLLDTWLDVVPKSHKEMDAWLQQANAITYLALAPIKLGKSNG
Ga0334958_081741	Ga0334958_081741_61_477	F078146	MQGESKKIIYVGFTPNLRKKFKDHKRKMEFEFLDRMGYQINISWIVLPDRMREKEGQVIQMCYIRAFEPKLNTYQNTFAAVQVEESKKRIENLEQCKYEYLKKQIENWEQSGDDKDTIIKKIWEAGKERPMVSIGFVH
Ga0334958_085552	Ga0334958_085552_50_499	F001042	MSPTLQRFFGFILTQVVIIKLMTTSHSIEGNLESDFYKDSETEANDKIVIDKLLVNKLTELLINSIYSVNISRRSEIFLTSLDMHLAENSVSNKNNKASREFTEKSSLLLESYQKAVPKLLGKVESCLEEAIDLINLVVSASVAGGENG
Ga0334958_109311	Ga0334958_109311_297_554	F011588	MDQQKIYPFSKAFVMKTTFRHMRRSIDISINKTFERLRDFDQNSEAGLEIMETLSTLHICRKMLDDFQKHNPNQFSDKLSNNKEV
Ga0334958_114503	Ga0334958_114503_2_460	F017778	AKGKTKGKRGGIRPGAGNPYKWKHGETKPVRLPIVLIPKILEIAQLIDGQEYINRVEHEFDDEEGSPKYYNGYYAGQLMYLRIGNDELASEVRNLRKENEVLKAQLMELNNGVLPEPLPDFSNLLFVSEPKPLAKQDRRKKRKGTFFVEKQV
Ga0334958_122782	Ga0334958_122782_75_557	F007252	EKKVKNNSRKLMNNKVHPFFEDVTLWDFNMKKSKGKSKCGRGGARPGAGGGCRWKHGRTKLVRLPVALLHEILEVARYMDQNEGRLPPSAPPVITSGHLSESLSGEELKEFLAKKKARKLAEKVMCGDERWWSAIKPLQLLIFLMFPQPKKLGQAADEIF
Ga0334958_137798	Ga0334958_137798_3_284	F038520	KRSKHGGKRIGSGRPHKWQGGPTKLVRIPISYVEQILRVVDYMDANEGRLPTGIAFHTEGENFTMPDYDPSSELAYPDFDGYNKQYRNSTWNR
Ga0334958_141259	Ga0334958_141259_2_385	F007252	MNNKVHPFFEDVTLWDFNMKKSKGKSKSGRGGARPGAGGVCRWKHGRTKLVRLPVALLDKILEVARYMDQNEGRLPPCTPPVITSGHLSESLSGEELKEFLAKKKARKLAEKVMCGDERVVVSDKTFA
Ga0334958_144257	Ga0334958_144257_23_265	F005545	MEERNEQAVDDRGTTETGGREILKRLRDQGFDADDEKLAVALGRPVEEVQGWMTGSPEEPVDDDIVMKARGIAKERGIEL

Showing 1 to 33 of 33 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300034141: Biocrust microbial communities from Mojave Desert, California, United States - 54SNC

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences