3300034076: Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A5A4.2

Overview

Basic Information

• IMG/M Taxon OID: 3300034076
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0142001 | Gp0401912 | Ga0373898
• Sample Name: Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A5A4.2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 242215106
• Sequencing Scaffolds: 34
• Novel Protein Genes: 39
• Associated Families: 36

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	1
Not Available	11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Oak Ridge, Tennessee
• Coordinates
  • Lat. (^o): 36.0103
  • Long. (^o): -84.2696
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001196	Metagenome / Metatranscriptome	749	Y
F004285	Metagenome / Metatranscriptome	445	Y
F008255	Metagenome / Metatranscriptome	336	Y
F015111	Metagenome / Metatranscriptome	257	Y
F018530	Metagenome / Metatranscriptome	234	Y
F020377	Metagenome	224	Y
F021332	Metagenome	219	Y
F021565	Metagenome / Metatranscriptome	218	Y
F022216	Metagenome / Metatranscriptome	215	Y
F022445	Metagenome	214	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0373898_000287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	4157
Ga0373898_000403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3799
Ga0373898_002413	All Organisms → cellular organisms → Bacteria → Proteobacteria	2081
Ga0373898_005837	All Organisms → cellular organisms → Bacteria → Proteobacteria	1508
Ga0373898_005896	All Organisms → cellular organisms → Bacteria	1502
Ga0373898_008904	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	1290
Ga0373898_009736	Not Available	1247
Ga0373898_019091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	960
Ga0373898_019524	All Organisms → cellular organisms → Bacteria	951
Ga0373898_022586	Not Available	897

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0373898_000287	Ga0373898_000287_1967_2464	F018530	VLEGIPGVTETTRRFVQMVRNYIRDYGELNRLISGEETSDRMIAWAVLDAVSTFNGTPHFTHLSLEELLEKEQHFLMLRLTVIAIIESVGVLQTRNHLNYSTGGINVGVNDKTPLLMNWLQYFRGVTDPKLSQVKVAMNIEGILGPSNIGIHSEYWATNQTYLSY
Ga0373898_000403	Ga0373898_000403_3628_3798	F021565	LVEQPQPRGLEEFRGVVELDGQPRPGRENREAVRIIARNFGRPAQDVKLLQWARLH
Ga0373898_002413	Ga0373898_002413_2_151	F036770	GWDAYNNWLDRVRQPAQPSRQAVISKSLYSVSSYKNWADKARGAFDKAK
Ga0373898_004249	Ga0373898_004249_1_168	F082883	VASRSHFAAPLLLAAVVALILYVSLYPFRFHADAPAVLETLRQMTWARAGRSDMFN
Ga0373898_005837	Ga0373898_005837_2_448	F061020	SAIQAKFPGGQWDSDDKGHDRYCVPSTQTLMKLPPPHQSKELCFLIGQDGTLAAATAVLNPTLPSLLAVVNRCRTNFGDFDAMLREEGAIQSSFNAQLWTKDSPYIVVVRSENDSDGAPLRVTFTVADEANLYTQGSKKVDNRPVETK
Ga0373898_005896	Ga0373898_005896_229_1062	F072482	MLKPLLRLSLVFVLFALLGGTALAQQAQPDVYVSVTYIKVLPGQEEAYRNYLTTTGKKLFQEMMAANPSFLYWSSAKTMFQGTEHGADYDYIGASIYAGPPPEPGATPDSIFQKAVGMSQAELGKKLAAMRTVVGTEVLRRQAGTTTVPSTLKEGDFRVVARIRIKPGMGNEYYETAQTMTQPVMQARTANGELKSWSVWSRVFPAGAGTSYDALTVSYFKDLASAIKGLDSTKGVETFLKVHAGKNFATYISNLRDYSELQQRFVMQIIAMTERAK
Ga0373898_008904	Ga0373898_008904_2_439	F021332	MAKTPAAKKSRTRATSRTPTLRVQVQHDIDKALAQAGIPSAIDSDGWRWMQDPSGKGLIGVVAVTGQREDLSLRVVAPITPLPKGQAALLRALRRIAEMNYEIPGHSRLAIDSHTIWAVVAHSVGDIGADDVPNCIFDCVWLSQAA
Ga0373898_009736	Ga0373898_009736_513_959	F020377	MSLSRWWREWQFERSYKQSIRADLARIGKEYEARFELLATGNDFDAAMAAYLRACRLPDLRIETLRSRRIRRAADACGVELPREWWEHDDEHDLWFLTPDGRRQARRRISQERMWAVKQWLQILTPAAALIVGLAGVVIGLLSMWRWP
Ga0373898_019091	Ga0373898_019091_568_825	F036304	MSQTISPEQVLALLFPEPAKAGGPGTSVTAFVQDPQGGLMLASVVPNRALLETARVAGRFNSGTPILDPGTREIIGYELAPLAVA
Ga0373898_019524	Ga0373898_019524_479_766	F077749	MNADDAMERLLRDAMGAEIPQLSPAFDDRVMRRVRPRRLTTTGRVVMAVYSVVAAAAAVWLVHDLPMNLTLAAVTIGVPVAAGANAYVRRFAAGG
Ga0373898_022586	Ga0373898_022586_367_897	F008255	HEFVADQTAAFQGQVEKIAKESVETVRETAVGGAETLKSLKSPVRTIARSTIKVTTVSQTAVASLIDLQSDMLTSAISDAALRLERASRADNIVELVREQFEMLPATRARIVEDAQRAALIFKHAGRDLRGVATHLYERVIETAEENVPEVKVVKRKTKRAVRKTTARARKTVAAA
Ga0373898_024239	Ga0373898_024239_200_676	F042957	MGRIVDLCGEVAAAADEGSEGLILPPEAWDRLRQEWPEEDIEDALGFVKDSVLQSELVEASDSLSTRLVEVLGDFGDAKAWAAAVEGHASISIDVIRQLAHRLERLEEILEVYRDQSGPDRRGFDELQRRLLDRGIEDQMRPDWEKQGVDEPEGEDGA
Ga0373898_026488	Ga0373898_026488_174_839	F061016	VSRQEKLDRMLPVVSGLACLVSAYTTQQGLATATSDLLVSVGVAVAGGAFLFVFSLFLMWRFPYADRPRQIGYGAITVVVLLLAFGFSTQWSVIAMGGKDALSIHMQRVLDQADDVALRQLRQASVEANLAPQLASLAQQYEDLAGRESRGAFSGLRGEGSVVATLRNMSQMFGNLSRTVRGVDAEKRALYDRYKELTAEARKVAAETEAADVSESDKIRRN
Ga0373898_032039	Ga0373898_032039_2_463	F031140	AALGAVLVVRLFFVDSRLLAERWLEANVPRGAAVDLITNHEGYAPRVPEGREGRLVRTLSREMAPPERFEEAARRYPLEAAPWLVLTGAFYERFLDHPDQRPERARFFRDVLEGRGGFEVAARFRQEGWRWPGADEFLDPTIVVLRRSPATSR
Ga0373898_032660	Ga0373898_032660_652_771	F031141	MSDPPVEREEEGAWARLRRRKVVQWGVAYAATAWGLLQGL
Ga0373898_036882	Ga0373898_036882_542_733	F026170	MARERSEAEQKAVETILRALAHNLQRLQEEAEMQALRGEVDSGVQKGLAMALREVNDMLPRRKR
Ga0373898_038531	Ga0373898_038531_14_631	F032705	VKGVDAEKRALYDRYKELTAEARKVAAETEAADVSESDKIRRNNLAFSRILGEINEVVTRMEEATTASYVRVVNQNIGSLTTTARAGDTAEQKDAIERLGGLKDAAVKVVAQISGGRTVEEDRAFQTFTMIPAARAIWVYKWDVFYAWAGGIAIDLIPTIFVILLTLGRAREEEEAWDREAAAAAQPVPGPRGVARAGTWPGGQV
Ga0373898_045268	Ga0373898_045268_140_343	F076227	VLQELAAQTGASGWVIGSMIFFVAAWAVIAWRVYRARPEDLDARARLALEGEADDRQGGPPATRTDR
Ga0373898_046345	Ga0373898_046345_38_196	F054646	MLLAVSCDDATSGKMPGAYALLRPETRLSSQDVETICTAARQAEPHAARVSR
Ga0373898_046503	Ga0373898_046503_3_389	F097612	MAAAVAAAQGQSAYEPNLEIRISRIPHAGNGVFTKVAIPKGAYLGAYTGEFITEAEYWRRAKDNRWQYMMGLLDCAIPNTGGIATIDGIRGNVFTRMNYAPAEFQNVKFEKICDAPFVRIMALRDIAAG
Ga0373898_047800	Ga0373898_047800_55_237	F064436	LVGVAVKVTEVPAQIVVAVALMLTLTGRFGFTVMVTAFDIAGLPVAQVALLVRRQVTTSL
Ga0373898_048332	Ga0373898_048332_223_417	F064436	LTGVGVKVTDVPAQTGFAEAAMVTEAARLVLTVMVTVFEVAGLPVAQVAVEVITTYTASPLTGT
Ga0373898_048510	Ga0373898_048510_185_325	F022216	VSEPRTSADAGDAQRRRIRRTAILLGLVALGIYVAFIASGVMQARG
Ga0373898_053787	Ga0373898_053787_1_204	F055834	MNTERMPWTCRWSEFRPTSPAPMWMDEWMAQWVCLAERQRTGAGDLDRCVDCQKYDVRDERAGQPPRD
Ga0373898_055761	Ga0373898_055761_443_619	F051241	KTPPPPPLVFDLEREINDEDKTQRLREQVAWADRNNLLHRVQMFFEAMPASGWARSED
Ga0373898_058973	Ga0373898_058973_202_450	F061953	MSGPVWKLLRTPGACDSCGESANELLSVGSVVDYAFRPDFRFCRTCYDRYEGRRDELHPKAVAEQQLPPLVSRPDSTEDVPG
Ga0373898_062700	Ga0373898_062700_8_247	F022445	MDMENGEYYTVAETEEDFNIPRLILGYILHGKRVEIYKSKESYIVVNTQTEKYLTCIGYEHAHYVFKECVRVLAPEGRA
Ga0373898_065146	Ga0373898_065146_2_532	F080209	VTAAAARPAGSEPAWTLDQIGRTYTYTLTLSSTLTQATLLDVLFDPRHVAAFSKSAGRLVVLKEDGPVNEVRFDTRRLIFKCATTFRRTLVRESGAIDIEMTDFKAGWGKLAPHAQSSRARYTVTDRGTHREIVYRQEVETDKPVSGYSLRVLRKSMGEFARDLEQYLRRPDLVRDT
Ga0373898_066602	Ga0373898_066602_1_537	F061016	MATATSDLLVSVGVAVAGGFFLFVFSLFLMWRFPYADLNRQLGYGAVTLVVLALAFGFSTQWSVIAMGGKDALAIHMQRVLDQADDLALRQLRQAATEANLAPQLDSLAQQYENLASRETRGAFSGLRGEGSVVATLRNMSQMFGNLSRTVKGVDTEKRALYDRYKTLTAEARKVAAET
Ga0373898_066844	Ga0373898_066844_213_575	F052685	VKRTQTARVRKALEYVKRRLKLDLEFVVQPGEVHDQFGLLDIERSGRGTEDRKVWIVSYDAELVSQESLAALRRHAFHEVLHALTWPLFDEAEAAIRRVPDSTLRKELMDRSIDARENVV
Ga0373898_070616	Ga0373898_070616_201_386	F036770	VRRIKFGAASEGWEAYSSWLDRVRQQPGQASRQAVIAKALYSVSSYKNWADKARGAFDDK
Ga0373898_075757	Ga0373898_075757_357_545	F077451	GGLGSLLGGRSSPGRWAGLAASFTELGVDLTTAKKFGPIVIDYVAHHGGEDLVDKIKAALKL
Ga0373898_075905	Ga0373898_075905_152_406	F023631	MRLAYFRAVMKLLHHRATRHFIALLIECRCGKKFLHRLDRPVLACLRCGRVDDLGRIIEKLREAREAERRRAPKAARRARVRAA
Ga0373898_076709	Ga0373898_076709_306_542	F015111	VLRRVAFVVALLLLFAAAVLFTALNQQRFQIDVGLTRFDVSSGLALVITFAAGLLAGALWRSSWIARLLAERGRLRNAL
Ga0373898_078270	Ga0373898_078270_296_538	F085860	QLAELQAAAPGQAPEALARHLASCERCQARALFGGERPSGAKKPVPEFPSVRRAVFLAVLVLFAMAAFFWSLAKLVGRLE
Ga0373898_084837	Ga0373898_084837_294_521	F052022	ATRDRIVEDAQRAVQIFKHAGRDVRGVVKHVYERVVEPVEDKIPEVKVKVQKRKPAAAKRASAKTRARKTAAAAA
Ga0373898_090092	Ga0373898_090092_36_386	F024002	MTAMVALIFMTAQDRGSAYFDGAHDPQMIAGQPMGFSIGRAVLTEDLRNLKATGGSHPFPGLWVGCSVEGTDDLGQVQPADVQIDGGRCGRSVSKKQLDMMEARSRFNQVGREAVP
Ga0373898_090859	Ga0373898_090859_184_375	F004285	MSLSWVSNRSLKVSPRARLVDDGEAEALLRKLEQIEWRPENGFLKDQVIEKTPLAGSRVSRAA
Ga0373898_092114	Ga0373898_092114_2_505	F001196	ATAGAVADQFRTGAFGLPWSAGKGAIEAKYPGGKWDTDDKGRARYCAPSKQVLLKLPAQHVTKELCFLIGSDGTLAAAMAQMNASLPALLAVVNRSRTMFGDFDAVVRDDAAIQSRSTSMLWTKDRPYLVRVSSTNDADGAPQEVSFAVADEAALYTEGADAVSNKPT