3300034025: Biocrust microbial communities from Mojave Desert, California, United States - 36SMC

Overview

Basic Information

• IMG/M Taxon OID: 3300034025
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0136120 | Gp0356256 | Ga0334940
• Sample Name: Biocrust microbial communities from Mojave Desert, California, United States - 36SMC
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 424447662
• Sequencing Scaffolds: 53
• Novel Protein Genes: 58
• Associated Families: 56

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria	6
All Organisms → cellular organisms → Bacteria	11
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	3
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Biocrust Microbial Communities From Mojave Desert, California, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): desert biome → desert → soil biocrust
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000265	Metagenome / Metatranscriptome	1420	Y
F001750	Metagenome / Metatranscriptome	642	Y
F001931	Metagenome / Metatranscriptome	615	Y
F002818	Metagenome	528	Y
F004033	Metagenome / Metatranscriptome	456	Y
F005599	Metagenome / Metatranscriptome	395	Y
F008145	Metagenome / Metatranscriptome	338	Y
F013963	Metagenome / Metatranscriptome	267	Y
F014784	Metagenome / Metatranscriptome	260	Y
F015256	Metagenome	256	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0334940_000165	All Organisms → cellular organisms → Bacteria → Acidobacteria	26919
Ga0334940_000261	All Organisms → cellular organisms → Bacteria	17267
Ga0334940_000598	All Organisms → cellular organisms → Bacteria → Acidobacteria	10338
Ga0334940_000900	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	8524
Ga0334940_001032	All Organisms → cellular organisms → Bacteria	8019
Ga0334940_001148	All Organisms → cellular organisms → Bacteria	7641
Ga0334940_001278	All Organisms → cellular organisms → Bacteria → Acidobacteria	7278
Ga0334940_001359	Not Available	7125
Ga0334940_001914	All Organisms → cellular organisms → Bacteria	6152
Ga0334940_002139	All Organisms → cellular organisms → Bacteria	5842

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0334940_000165	Ga0334940_000165_16245_16478	F000265	MPELRGKQATEDVKEEWKRAYEHYQAAPGVPHNKKLDRTERINYVADKMNLTRKQAKRRVKNFEAWQRNIKKGLITP
Ga0334940_000261	Ga0334940_000261_2519_2770	F060323	VEFYAALVLALTLAAIAGALYFYAMFLEARTRQQKTYIAGLERSNSELQRELRRTRALLDRELEHSRAFWPEILDETGDLSRN
Ga0334940_000598	Ga0334940_000598_5447_5704	F033948	MRRKKMPDSNQTKSSLGERNEDPELKPDATPNPIEDVNPANDERAINVGESGQFAPGGRYNELGATKPRRIDLDEQVDSALSKEE
Ga0334940_000900	Ga0334940_000900_7548_8306	F014784	MADWDGGRAGRLREFFGLDAGAELLAAEARDFELSPEVAGGLSHFGIEWHVIPSADALPLDDAYAARLYPKASRDFTRAREHGGSYREQLFRGHARHQGRVVGVEATRKPRYLPGNKQFYGTPYGHDASADPFAAYLGRAGMVNGTRYAHNYLTLREFVRVLNDDWRARSLLPRGYRATICPPAVFNLVGTLFHPEWSETETLELGFYRDEQGNATCYAVGSNEPGDFSFIRLIEGEEEWALAGFRVAVVPE
Ga0334940_001032	Ga0334940_001032_1_147	F040541	MADETENDDQLIGHDSTTAPGGNKERPTGDPGRTPGKAEGDEDTADEAL
Ga0334940_001148	Ga0334940_001148_4332_4547	F103859	MNERRQSHIDYFFERIKYWRGLRRDEATARMLAARYADHAHPLRSEEEGSKVFDYLRQLEREKSAEESRPR
Ga0334940_001278	Ga0334940_001278_3339_3560	F079676	MGSEAAHRGAGIKAGDCVRALDGAYKGKVGTALRVVKSSDEGRTWESVLVTFPAGGADYLNADALEKTEKPKG
Ga0334940_001278	Ga0334940_001278_3760_3921	F081092	VNGYDDFVERLESALVDDVAREDFLEYLEGLTSEGRAEILAGADRLESEAEVA
Ga0334940_001278	Ga0334940_001278_4134_4364	F020517	LSEQKPVSRDARHYLVKRPNEILHKKRSWNEVQAELEVKGTGADEAMLFRGVVTEDGTEYRDMYADSRTQVTEHTK
Ga0334940_001278	Ga0334940_001278_4403_4645	F091480	MRDLHVYVAPAASEARDARTAFYTRRGDGPYYHWLYAEGPGRWLYSRVSLDRLALRVLCVARWEAVPAALRDRLGEHYLE
Ga0334940_001359	Ga0334940_001359_5679_6011	F039537	MATSRKAQAKAGVPQRRRGQQMGDERSQPGKIDEAQQETPALRGRRKAANKFFADDSSQHTGTRGETPRDNTPSVPAAIPTKMKIGESGGESEFKARQKAARKTPSKGRG
Ga0334940_001914	Ga0334940_001914_3781_3900	F015256	MRRTLTALFGLVLLFGGAGTSRAEVKRVQMHIGGYLCGN
Ga0334940_002139	Ga0334940_002139_4903_5169	F092671	LQDAPLQVDLGSVETLLGNLQFTFVVSPEGDAHVQLYVTDPSAAGKAGVMVMLDAQGYERLKAIISGADSVIDRMIREGRIKRMVLPY
Ga0334940_002144	Ga0334940_002144_2469_2759	F058823	MADTNDSRYKTGNPICDAVRFLCDASFAVLPSDAARQLGELEKNFWGGIRWFAEKNIDWVDDSLAAAERLRQEWRRRNSPPAPEPIIPNTPPEGVL
Ga0334940_002499	Ga0334940_002499_4107_4307	F103859	MNERQQAHIDYFLERIEYWRGLKRDETTARMLAARDADHAHPLRTEEEGSEVFDYLRRLEQEQRRL
Ga0334940_002779	Ga0334940_002779_4273_4581	F050191	MADAKKESEHNETDVVNSQITDAVEQTGDNPVDDRGTDAAGGLELLRRLRDNGFESDDEKFAVVLGRPVKEVSAWMEGSEPPDDDIIMKARGIARERGIEIE
Ga0334940_003151	Ga0334940_003151_3390_3545	F055604	LYVRLLAAALFAAWLVGKFVLGGEGFVHILLLCAVAVAVVRFVHERHAARQ
Ga0334940_003522	Ga0334940_003522_975_1178	F038605	MNDRTCWNCGHSQGQHTIAGGCSFAPEGGERCDCPRYEDGEYSGEQRKRDTYTLSDRRRLNIRRGKR
Ga0334940_004323	Ga0334940_004323_3510_3695	F040840	LISKTENLIPVQLSQVNEVENVRAAEPAACKKTFVEPEVSFPIDVLEATTFFQLTDSGAT
Ga0334940_004545	Ga0334940_004545_1925_2287	F048131	MRRRSLASVFAVLLALAAYAPALAASDGGQQDTDVRMVDAKVVEVDKRHISVVARTGVEHVIATDAADTHVTLKGKRVEMKKLSVGDVVTVHLDVANPLKFARRIVIGERSGETLASARD
Ga0334940_005012	Ga0334940_005012_3665_3889	F062146	MPFITATREDGATLLLNVDRIQYAAYQDAEGQEVLSVVFDTNPPAQGRPGTNEVVVHGEEARRVWAALAAILGL
Ga0334940_006295	Ga0334940_006295_600_812	F103859	MNERQQAHIDYFFERIEYWRGLKRDETTSRMLAARDANHAHPLRSEEEGSEVFDYLRRLEREQSAGMRPD
Ga0334940_009235	Ga0334940_009235_2333_2548	F040007	MPLESNSAASVSPALVFELENGSNFTFNFQMDGRVAVIGFQDGRAVTGTLNEEQAAELRDAISEYIHKRKG
Ga0334940_010139	Ga0334940_010139_307_768	F067704	MQVKTIHVDQIWQSSDRQRTIWEVTLKAVGDKDSKEYRLKTYSARIATMGFEGEVRSYVNPRGERFVRQIPTATKPSFQRDDNAIRAQWAIGQAINLASVKMDKEAITLPVIEKYAKELFATVSRVKGEPMTPDMENKAESYIKGFTQAPSLF
Ga0334940_010819	Ga0334940_010819_691_912	F061714	MELVAIIAAALVGFWLFFFVLKRVLRMALRLAVVGALLLALLLGSLAWWWYDPLGGDSAGSRNASPGRTRNAR
Ga0334940_015980	Ga0334940_015980_1119_1430	F047898	MNLVGTWNLEVATPFGKHPATLIFEGTGGALTAHISSRLGDAPLESLTVTHDGFDARVQMEFQGKSYDAGIAGQVENNDSISGTIKVKLAIAPTIRYTGTRAA
Ga0334940_018849	Ga0334940_018849_1610_1933	F001931	MATDQSLHEQRMQILSGVVNTLLTEIRNGTGDKDRRRQVEEWMRVLAEKYPEFKIETGLRDYYLAEAQRLQADFEKTQELAEKLALGRSIESFLDRAAEYDRRIADKS
Ga0334940_023028	Ga0334940_023028_1_138	F047736	TGRQTREVAQDPDTGLIYVTDGNGGGLTVLRYTGALPPSPMPAAR
Ga0334940_028538	Ga0334940_028538_650_883	F097999	MGRCDYCGTVFPKTRKTRKYCTKKPRLRAADVEALQDVLSTEFASVEAMRERLRTILAPELPPIPLVDGRAVVPRMD
Ga0334940_030912	Ga0334940_030912_81_485	F057405	MTEPPPWYDRETPRDVLRRVKRTALAAAAVFAVICSISGGFQGFLGLTCSAAVTMISFLWLEEIVDVLLQPAAHLHARRLTLRTLARFLLLGVALTVTIIVARFNAVSVLLGFSIIVVGICGEALYSLYRSFAG
Ga0334940_032531	Ga0334940_032531_2_562	F008145	MAVKGEEIAGVIDAQVRESIEKMVTEIRSSIEDVRAAVDSQLKAALQSMQADVNSVSFLPQIRKSVDELEASYAAEKPAATGAGAGRVKAAVQEIERGKSQVDVLNSLLEQCLEFGSRAALLILRGETFSGWKGTGFSTHGGNDEMIKRFNAAPGLIPELDRVLRREEVVEWDGQNLASRLGVGNSE
Ga0334940_032531	Ga0334940_032531_602_1210	F092677	MRFATVPATLLLLFTAACADRGAQPDHQAEWRDVLRHKKAAVAADARPEQKQAYADSVRAFVQKHPDHGRAREVWQRLQLEFADDLAALGRHQDAIRFYRGVLAHDATNMAARRGMATAAERLEVSREKLLALEKGMSHRQVASLLGKPIPGWSVKNKRAEATFEAWYYRTRDGGVAGVYFRDGKVFAAEETSHAKLGRLSS
Ga0334940_032903	Ga0334940_032903_7_201	F049915	VVELVEAGFSEGTIVRRIEQSPVEFDLSPAKLAELRKRRVGEPVINAMRAAMGEDAREPARPGK
Ga0334940_035572	Ga0334940_035572_922_1158	F013963	VNYDLAIMALEGMARAPLTVRTSGDEVVIEGSAATFKELARLCLLLGGTQTAEDAFELAPGTHVSAESPRVHLRLETT
Ga0334940_037877	Ga0334940_037877_46_189	F060315	MTGEHEKPEIESPNTKIHGEVPEGSPMPGVEREEPAEVKGEINPNTE
Ga0334940_039221	Ga0334940_039221_448_750	F093899	MAHIIEVLRDTEAEARSFLDALFYSDSVSAIGHRSDGERIRAVAVNWDADEESELDERISQMVTDAIEADDDLDEIAAYCRTFPETVLYQPELTGIEQIN
Ga0334940_041958	Ga0334940_041958_73_258	F064704	MPLRPSYKIYPGDRIEVEIVQPDGGRALVAGVLEAVPETTHGQALRIRVCDAQVRALPPA
Ga0334940_043281	Ga0334940_043281_125_379	F069314	LSATSGARIEFLARAIVNRLEDRGLVEFRDAEAGILVVAKALQENFVALDLIELEARQRLGDRASDSQVEAEMRRIAAERDVIL
Ga0334940_044567	Ga0334940_044567_1_348	F058426	MGEIRLFQICYEGDLTAEVSHVMRRLGADANFDQSWQVFLPEGRHSAALVRYLRSQLGSDARMLVACTQFTTTRDFLLVRHSLTPGADYSELHDALARLGTVVELPFESTFVIQSD
Ga0334940_053878	Ga0334940_053878_816_1094	F053532	MRTVLTKTLVLIAGGALVVPFVAAAVLVGARAVAGANGGKQFLFAVGLALVWTLFGGVKGFAQNGADGRDGHVLLVAPRRGEARRHAFLNARG
Ga0334940_057643	Ga0334940_057643_727_1056	F037364	TAIGNFHLDQAISFDTMFEATPEAILAAPHFQSLAEIDLPLEKLRIDWAQQGKMMQGQGVIMVPRVPVQKGDLLALGNPHDQLVAIGEVVNVLREGGPVEVKPKVVLAG
Ga0334940_072415	Ga0334940_072415_237_635	F079153	VTEQHDDTSCPAVVSSPRETPAGGACARPGCTNPVVRNPRGRPRLYCTPVCRTQSYRDTHPDARQPVHVEVDHGSTSSRGRPSGQIWLIRLRRGHQHVIIATGLGRPSADHLATQINNLINPPPLASPAPVR
Ga0334940_081416	Ga0334940_081416_2_160	F043603	MNNVAQTRTTRLESVLSAQYVLPSMLALNTVALFALDRLGGIPAWVKTAAVLF
Ga0334940_082715	Ga0334940_082715_687_854	F059302	MLGRIVRRVLFDEEHFDEPTAITYDKFRRWANEVDRNRQEVEGFFEKMKRVFSND
Ga0334940_096905	Ga0334940_096905_438_590	F005599	VKSEQASKVMMRMPTRLHNGEGRVDGEAIDIGTHSIRRGSGHGTLEGWFG
Ga0334940_104940	Ga0334940_104940_250_648	F002818	MPTEVEVLRELARAYWSNKPLRCPKHPSSALTGSFVQTTFADHIALVCAQGKESITIPQRPKQTEFQEQQVEGMVENIQRGDSILCYRCQARMEIAAIENRESGITDYTFTCTRCLSWGRWIGKPELAKIGS
Ga0334940_108254	Ga0334940_108254_91_270	F092687	MPKDHSNTGGPSYNPKDAPVPDPDKHRHAKSRDELKERSVSGDRPGRGRRNGSDKAPRG
Ga0334940_108422	Ga0334940_108422_8_247	F067094	MSYTDWLRRQVSRLEAEIRACSLFDTDSPATPTELKALRSKVVIHTYLRQQLLRREVLAAAPAMVEEYDTQEFVVVRRA
Ga0334940_108774	Ga0334940_108774_3_347	F044750	SGLEPLLVDGEEIVLNIQDKDLEKVRKRIQEIHSFLPTLRGDDLDAFRRVKYKLRRTVMRLTYDLHHLFKRLEKYRKNIFMNSGAPPHLDRERVSLEAVAEIPEPEPMADEHDE
Ga0334940_118411	Ga0334940_118411_284_718	F101835	HDDEWSESLRRHLLECDDCVATAAVAPWMSRFAKISDRDHPLPDPQIVWLKAKVLQGTVDAARVARPMTIIQLFAYLIVAGGWAVLLTWKWDAVTTWLRGFTPTGLVRNVALGGDSLSLWFFAFVFILASTTVMLAMHTIMAEE
Ga0334940_122176	Ga0334940_122176_342_677	F068101	MATTQRTGDHERSAAGQDFDDDPIRANAASIGQKMVQDGPDALFQELENLLPEAWQDQIKSFPIAAVALGVGVGVWLGMKKSDEIITAGTALVSSAAMANVSQVMDKINKG
Ga0334940_160779	Ga0334940_160779_1_207	F060104	MIRLVAPLTVAFGVLTLLTALATMMVAVPLAMVTMITGFCWYAERPRTPRLNGLCGGCRAGCVECRERI
Ga0334940_162034	Ga0334940_162034_1_264	F048553	MRFTIEERHLTDTAGRPITASSPDAVSFHNVDAENVDDAVRFYIRDDHAEIIGTVLKFPGFQAVATIRKATGVYTLQFTPASQQFKIE
Ga0334940_174697	Ga0334940_174697_67_522	F004033	MKKIVLGLVLLLTTAAFGQNRATTPELTPPDNGEEWLRLSSTEKLFWAIGYSQGYREALDKIDVTSGPTSPCASLAVRTERQTSTSGKLSGFELVSSLERFYADPANTVIPIGSAIRISLLQASGKDQTTIQELIDTARVLGQQAAARPRP
Ga0334940_185270	Ga0334940_185270_458_565	F087937	MGEGRGLNVAFRRRPEWVSDRVTVPLRPGDAGGGKD
Ga0334940_203199	Ga0334940_203199_152_535	F001750	RIIRDGWFPDEETVVREALLQFVDAKSFLGDSPRMLHRFAADALNDSKPEVALKFVHRALSLLGNQNTTDFTLYQALTELRVQILLILGRDDDAMVALEEAREKLPNNPNIAKWIAKLEKNRPRGEA
Ga0334940_203252	Ga0334940_203252_160_537	F016792	SNPTCEAPGTTATIWEHQSGGGLAEDGRLNASERPLSRSVITNRPKVPIGRSQKGMRVGSPSAVIGDGGTVTRRTTGRSLPIRLSPLDNRVSPTRPVAARRRYPDRKEGDGGGGRGTAEQAKAVL
Ga0334940_228108	Ga0334940_228108_250_489	F028577	MTEATLAKFKLAIVKQGNEALWRNYWVNSGSEGSAAAAPSGLGLTEVLEAQSLEEAIEEVQRQHPDCTVMLAGGEHRIG