3300033987: Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-6

Overview

Basic Information

• IMG/M Taxon OID: 3300033987
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118431 | Gp0324340 | Ga0310150
• Sample Name: Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-6
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 136885341
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → fracking liquid
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.812
  • Long. (^o): -98.262
  • Alt. (m): N/A
  • Depth (m): 2943

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022008	Metagenome / Metatranscriptome	216	Y
F063614	Metagenome / Metatranscriptome	129	Y
F077200	Metagenome / Metatranscriptome	117	N
F082560	Metagenome	113	N
F087072	Metagenome / Metatranscriptome	110	Y
F088079	Metagenome / Metatranscriptome	109	N
F103496	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0310150_000396	Not Available	26096
Ga0310150_003095	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	5133
Ga0310150_005438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	3199
Ga0310150_006065	Not Available	2910
Ga0310150_013570	All Organisms → cellular organisms → Bacteria	1567
Ga0310150_036131	Not Available	727
Ga0310150_041493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	652

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0310150_000396	Ga0310150_000396_228_461	F103496	MSLNDRIRKLPLTKLIALCFTIFTCVLIVLDVTTLCPLTERSADLLKWLGSTIIVGYFGKSAYEHKIDTTTEKKVNS
Ga0310150_000396	Ga0310150_000396_464_817	F022008	MTLSDIEILQSTLRDLSKQVQKLSEENRVSFNHIHDRLTRIETQMSERERQFNRYEKTLENHEVRIRNVEGELGTLRDVPERLWRVSMSNSKLTGMVAAAGGVGGLVATIIVKMLGD
Ga0310150_003095	Ga0310150_003095_4398_4658	F088079	MLIEKAIWLENVPFRSIDEAIGGQNCSVYFVESMFVGQSCTFCTSRLGNLAPNPYRMLTRLDVFIHICEIYKVDITFFKSNVVSTK
Ga0310150_005438	Ga0310150_005438_2674_2892	F063614	MTYRKLYITIDTLVKTGLEKVNVLGVDEAQNDLWQIYEICQELMAFWDSELTEERIDELEEIMAELPLLKRV
Ga0310150_006065	Ga0310150_006065_1999_2763	F077200	MNKFTVIVVETQPNLKRIEEYAQRYGMTLEEALQRKRIGEDYFPIRDQQVVSAGVLNFINKEDKISIMAAVFVGEEKKVLDALAERLEKIVKATGKPFFVTGDGRKYALEILAGRAIAYMIEAKKENQEITPELQNMIKIITSPKSGYLKPFDTRDSIDMQAAFGLGHDVIPLPEKLQYTNEDLPRLAEDIKRLLLDMTKNYACYIEAQGEKIKPIVYKLDEKIFKTTEIFKFEDHDEADIEKTLDKEELEIER
Ga0310150_013570	Ga0310150_013570_247_639	F082560	MTEKAIVKKIQEWFKAKGGVCHKVHGGPLSAGFPDLIGCIEADAWVVEVKVPNAKPRVPKELRERSPKEMQEWMEKGATMLQAKTLYDWQCAGAIAMVATSVEDVERRYQEEYFGFSIGGKHYDRFRRTQ
Ga0310150_036131	Ga0310150_036131_41_433	F082560	MTEKAIVKKIQEWFKAKGGVCHKVHGGPLSAGFPDLIGCIEADAWVVEVKVPNAKPRVPKELREGVPKEMREWMEKGATMLQAKTLYDWQRAGAIAMVATSVEDVERRYQEEYFGSNIGGKHYGGFKRTQ
Ga0310150_041493	Ga0310150_041493_6_236	F087072	MRWSMKSRVFTKRMFSLELSEEELSIIAGALYCANNEDIICFVDKYKYPCSGYSFDEVEELQEKLSEEINKLIEGK