3300033759: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SR_B

Overview

Basic Information

• IMG/M Taxon OID: 3300033759
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128997 | Gp0330726 | Ga0314869
• Sample Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SR_B
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 169462917
• Sequencing Scaffolds: 28
• Novel Protein Genes: 30
• Associated Families: 28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2
Not Available	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Tropical Peatland Microbial Communities From Different Locations
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): tropical biome → peatland → peat soil
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.5438
  • Long. (^o): -74.6258
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002531	Metagenome / Metatranscriptome	551	Y
F003042	Metagenome / Metatranscriptome	511	Y
F005549	Metagenome / Metatranscriptome	397	Y
F008449	Metagenome	333	N
F009996	Metagenome / Metatranscriptome	310	Y
F012904	Metagenome / Metatranscriptome	276	Y
F013119	Metagenome / Metatranscriptome	274	Y
F014210	Metagenome / Metatranscriptome	265	Y
F014308	Metagenome / Metatranscriptome	264	Y
F020248	Metagenome / Metatranscriptome	225	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0314869_000086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1611
Ga0314869_001140	Not Available	965
Ga0314869_001838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	875
Ga0314869_001880	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	872
Ga0314869_002910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	791
Ga0314869_003113	Not Available	779
Ga0314869_003531	All Organisms → cellular organisms → Bacteria → Proteobacteria	758
Ga0314869_004734	All Organisms → cellular organisms → Bacteria → Acidobacteria	708
Ga0314869_004800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	706
Ga0314869_004985	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	700

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0314869_000086	Ga0314869_000086_1_156	F014308	SIGIQIIMPKTGTSPKSTPAQQANEREAATPPVTRQAPPPPGMGKFVDKTA
Ga0314869_001140	Ga0314869_001140_570_887	F002531	MASSAIASEGTLRIHRSIAGTSAPFRVTYQAYQDGDEPSPAAERAFYHLQDVREFLNVLGIGAQYVREALRELTAGRSAFLTNIALTEKAIKNAGFNSLLAAARG
Ga0314869_001838	Ga0314869_001838_1_522	F009996	QIGRVNKNKVPANAITLQTVIATALAILVFFILGAGGSDPYKVFYALYAGVTIVWCISTALLFLDIFFAKRADPERFERERRAPLGWLYACGAAGFIVNILAVLFIFVGSWYPTGFPKLWVWNMWMTGITVVSVAAAIVIYLISQRTRHGETDVEFIAEGAVAQEIAEDSPPA
Ga0314869_001880	Ga0314869_001880_695_862	F020332	VGSGVHATVAEAVDAFVRFQPEEHQPDPERREAYDDAYRRYREVYFALKPVFAAG
Ga0314869_002601	Ga0314869_002601_414_809	F084287	FNLAAPAFEKDPTFAQSLGAAAEKVSELTPAVKLYNEGEYETAIPILWRIFQADRENQDARSYLLRCYYNQGIAQLQNGLYGKAADSFKEVIAIDPADADATRNQKFAQHYAKGDLDLMGRIYVRHVQQRP
Ga0314869_002910	Ga0314869_002910_585_791	F084640	IGWLWRDVQHLSLAHDVSDGGLAHALAEASTFSGQRFEAPGDAPRGSVVLSAAETPSWPDLRELGTIA
Ga0314869_003113	Ga0314869_003113_188_592	F048543	MANEKQSKSDHAQNYPASILRNFALLALPWVSFQSDMLKILKKGIKDTSHVKPLQKLTLLELHGLMMILDPSRTWRSRVDGDFEKKIEETYNEIFPKILDSSTHFIEAQDTVLEHMHNALMTWKNGNKAKGHSK
Ga0314869_003531	Ga0314869_003531_468_737	F020248	LFVALCAATAAHAFTIENQGGPGGGQGFKDSDSTSTVPDRHVPVSPFNSNNGQTTVKQGNTTLQFGGQRSFSDRYNTDNIFNPYTREGR
Ga0314869_004734	Ga0314869_004734_176_706	F003042	MAAPANSKHSGPDRPTQLARRLSESLLRERLVPRFVDSYVVEHGRYGLQVHAALYRDLLSLIQREALLAISACALDFVTRPSLARGERNFQVLKRKEISAFRQRFLSALARQQQWNAGAALEFQSDLQMYEGILAKSAQERRRRKPFEVANHPFVDRCAFLLDSSFLENARLAASRA
Ga0314869_004800	Ga0314869_004800_531_704	F057709	MSEFALKVALAIFVAKLFDPFAALPALVAGYFCRSWWQVVISAAAVGIIVEMILAALQ
Ga0314869_004985	Ga0314869_004985_285_698	F033098	MAINTKSIRTKMLGLLAFIALVVGGVSVLYDLRAGGGLIRDEIVKRGRYVASNLAFNAKYGVLTEDKPLLTQFLEGAAAPGGVGERSDVVGALIRDGKGAVLAQTGKAIRDLPGALPAALEEREGATTDGESVILFRA
Ga0314869_005008	Ga0314869_005008_542_697	F031960	PPQTLIADPDAPEADSYKNKDYEFYSLKTFITLTRKSHGTVVKFYDTCRVE
Ga0314869_005923	Ga0314869_005923_402_674	F026299	MARMFIVAWQGTPPPDKADWIRILREVLANETGSYRIVFDRAKRGWRFTLDWREGERARDEGLVANSPESVAYNIYASLAGGGKPVDAAWK
Ga0314869_006121	Ga0314869_006121_3_668	F101786	GRLLHSAGDAPAAIAELESLATTLPPGLLRARALYHHMYVLRLSGALERAIDYGEQAAVEASADPLLQAEVYQLLSRLSDNDVGRKLATARKALEAVAGLAFPDPDVLFYVRAAMVEAEFYAGLGIHLHRLDGVEPDSRLPFPPTRGASRGDDLVGRLLTFAGRIDEGLAVLRGFYERAAVASRSTLPATLGWMAEAQLLAGRFAAAAELTREAIDRAEEIG
Ga0314869_007720	Ga0314869_007720_16_270	F065625	MLVAAGSPPKAPASIDIWRAKHPDLHPHGVVLEGLRERYDERVLEWVPYFHRWLRGPSSEALETSLIAAGAFRAIGWRWVGVRR
Ga0314869_007872	Ga0314869_007872_46_279	F063546	MSDWTLGDIKARNMEIVALCEQESCHHLFVFNLDQLIEGVSAGYKLADFPPMACPACGAEPLAIRLSFADTPPDEDG
Ga0314869_008769	Ga0314869_008769_1_615	F014210	LFVRQTGLVCNQCHVTWTPTPDMTFTGVKFRLNGYRTPWVAEKIEAGEEGAMNGRRLLLGVTGYLSYHMRSNLFQQSKAASDPTLPEPDAGPVSSNPFSSLAWDYAGPIAENVGIWTEWYSTNFNPVTTGDASIGNQFGAVRNDEFDVRMAWNPGEGGNIITVFYNNQAQNAPFFGAFGSGAPAGGQGQFIHFGVGGWLRDRVAI
Ga0314869_012448	Ga0314869_012448_2_157	F057478	MQYLRSLVYTILFFATTLLFGFAVLVAAMLPLSLEQRYVIPRNWGRFLTWLA
Ga0314869_012561	Ga0314869_012561_290_565	F034688	IVSSFFVVVVAASLFLGAVMMIGTFHDQDSELRASGRTTRIARALHDGTLCHYVVIDNRTAQALEDRIGRCDENKPKPKPITVPTFRWGGG
Ga0314869_014006	Ga0314869_014006_249_413	F025454	MLEEAGLDRERARKLRRQILEGIILLCQWQLERMEASPAPPPSGGRRARKVTVD
Ga0314869_014218	Ga0314869_014218_197_343	F063980	VFALVLAYVLIMALKLQRLERDVDELAARAPADDVDEEEARRETASVG
Ga0314869_014599	Ga0314869_014599_216_548	F013119	MDIEQGAERRLSRQDLLKWAALAGGAGLVAGRTGVADAMRAFDVAESGRLQVMDWAGYGNDGGQAMFAQYVKQHPNNKPQFTYMTNESDALAKLHAGLKADLFRPYVGWTK
Ga0314869_015013	Ga0314869_015013_3_347	F008449	AYASKFQKFFALLKERGYKVPANITKCWAPQGTHVAGSNHYIGAACDIQTGWNRGPAFVYHMSDIVEQAGLYNGCSFHDCGHVEAVRGTHNKAPNLYAAMEKFKSEQSTANYQP
Ga0314869_016194	Ga0314869_016194_1_534	F023020	VDKDGTNNLPSVARSESATPLQEQLINLRVRHLEIKDGWFLYNDVKKLVAVEGGDFRLEINLSGTAERPFYVGALKWEEIELARRRDVPIPANVSAKFSLSRDGFSVEQAIVNAGRSHIDLRAQAKDLESPLWTYRYRAWLDLLDIRETFRTPEVPLGRIDLRGEGTIDPEGIKGKGV
Ga0314869_018228	Ga0314869_018228_28_519	F008449	ATNTEVAIHTEAGPTAAKAAPFASVRDANGNSTMVTVQTAYGFNITVNPAYASKFQKFFALLKERGYKVPANITKCWAPRGTHVAGSNHYIGAACDIQTGWNRGPEFVYHMSDIVEQAGLYNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTASYQP
Ga0314869_018534	Ga0314869_018534_226_333	F012904	VTREQQRDNLRTAAVLGSIALVFFLGIMLKYFLLK
Ga0314869_018689	Ga0314869_018689_1_204	F059078	VRCRIAGWKVAEVVVQHFPREAGQSIHRPFRMLGTIWKVLRYLFALRAEMHQAERLRRLVEGRRTAS
Ga0314869_020296	Ga0314869_020296_365_505	F005549	MKYLRKYTAIPAVKYSLIAIASLLWFVGFADQLPDVTQTAKYVGISL
Ga0314869_020523	Ga0314869_020523_160_327	F014308	MSDCSIGIQVIMPKTGTSPKSTPAQQANEREAATPPVTRQAPPPPGMGKFVDKTA
Ga0314869_021051	Ga0314869_021051_230_502	F075965	FLAQYCAGKNISAALCRDVKWWALGLAALLAVVVVWWILGKIAMAFDNRRSRRLHAKIADPETMKEHVWAGHDAHLPSSDQRARRDQRPR