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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300033548 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128948 | Gp0333688 | Ga0316216 |
| Sample Name | Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE6 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 67579259 |
| Sequencing Scaffolds | 49 |
| Novel Protein Genes | 53 |
| Associated Families | 35 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 37 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 3 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | 4 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Norway: Oslo | |||||||
| Coordinates | Lat. (o) | 59.997 | Long. (o) | 10.7902 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001359 | Metagenome / Metatranscriptome | 715 | Y |
| F003275 | Metagenome / Metatranscriptome | 496 | Y |
| F003567 | Metagenome / Metatranscriptome | 479 | Y |
| F004414 | Metagenome / Metatranscriptome | 439 | Y |
| F008968 | Metagenome / Metatranscriptome | 325 | Y |
| F013972 | Metagenome / Metatranscriptome | 266 | Y |
| F018409 | Metagenome / Metatranscriptome | 235 | Y |
| F021718 | Metagenome | 217 | Y |
| F023843 | Metagenome / Metatranscriptome | 208 | Y |
| F024383 | Metagenome / Metatranscriptome | 206 | Y |
| F030497 | Metagenome / Metatranscriptome | 185 | Y |
| F031186 | Metagenome / Metatranscriptome | 183 | Y |
| F033047 | Metagenome / Metatranscriptome | 178 | Y |
| F033125 | Metagenome / Metatranscriptome | 178 | Y |
| F033127 | Metagenome / Metatranscriptome | 178 | Y |
| F035113 | Metagenome / Metatranscriptome | 173 | Y |
| F037884 | Metagenome / Metatranscriptome | 167 | Y |
| F038754 | Metagenome / Metatranscriptome | 165 | Y |
| F038985 | Metagenome / Metatranscriptome | 164 | Y |
| F040189 | Metagenome / Metatranscriptome | 162 | Y |
| F041108 | Metagenome / Metatranscriptome | 160 | N |
| F050616 | Metagenome | 145 | Y |
| F050832 | Metagenome / Metatranscriptome | 144 | Y |
| F053726 | Metagenome | 140 | N |
| F064038 | Metagenome / Metatranscriptome | 129 | N |
| F065766 | Metagenome / Metatranscriptome | 127 | Y |
| F066361 | Metagenome / Metatranscriptome | 126 | Y |
| F077566 | Metagenome / Metatranscriptome | 117 | Y |
| F079132 | Metagenome / Metatranscriptome | 116 | Y |
| F082940 | Metagenome / Metatranscriptome | 113 | Y |
| F088857 | Metagenome / Metatranscriptome | 109 | Y |
| F089310 | Metagenome / Metatranscriptome | 109 | N |
| F089693 | Metagenome | 108 | Y |
| F102319 | Metagenome / Metatranscriptome | 101 | Y |
| F104140 | Metagenome / Metatranscriptome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0316216_1000291 | Not Available | 6630 | Open in IMG/M |
| Ga0316216_1001465 | Not Available | 1720 | Open in IMG/M |
| Ga0316216_1003437 | Not Available | 1141 | Open in IMG/M |
| Ga0316216_1003983 | Not Available | 1065 | Open in IMG/M |
| Ga0316216_1005642 | Not Available | 919 | Open in IMG/M |
| Ga0316216_1005960 | Not Available | 899 | Open in IMG/M |
| Ga0316216_1006082 | Not Available | 890 | Open in IMG/M |
| Ga0316216_1006888 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 848 | Open in IMG/M |
| Ga0316216_1007465 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 821 | Open in IMG/M |
| Ga0316216_1007509 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales | 819 | Open in IMG/M |
| Ga0316216_1007655 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | 813 | Open in IMG/M |
| Ga0316216_1008633 | Not Available | 775 | Open in IMG/M |
| Ga0316216_1008646 | Not Available | 775 | Open in IMG/M |
| Ga0316216_1008866 | Not Available | 767 | Open in IMG/M |
| Ga0316216_1009632 | All Organisms → cellular organisms → Bacteria | 740 | Open in IMG/M |
| Ga0316216_1009670 | Not Available | 739 | Open in IMG/M |
| Ga0316216_1009925 | Not Available | 733 | Open in IMG/M |
| Ga0316216_1010041 | Not Available | 730 | Open in IMG/M |
| Ga0316216_1010267 | Not Available | 723 | Open in IMG/M |
| Ga0316216_1011090 | Not Available | 701 | Open in IMG/M |
| Ga0316216_1011328 | Not Available | 695 | Open in IMG/M |
| Ga0316216_1011767 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 684 | Open in IMG/M |
| Ga0316216_1011811 | Not Available | 683 | Open in IMG/M |
| Ga0316216_1011855 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 682 | Open in IMG/M |
| Ga0316216_1011913 | Not Available | 681 | Open in IMG/M |
| Ga0316216_1012940 | Not Available | 659 | Open in IMG/M |
| Ga0316216_1013179 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | 654 | Open in IMG/M |
| Ga0316216_1013390 | Not Available | 649 | Open in IMG/M |
| Ga0316216_1014019 | Not Available | 638 | Open in IMG/M |
| Ga0316216_1015262 | Not Available | 617 | Open in IMG/M |
| Ga0316216_1015547 | Not Available | 613 | Open in IMG/M |
| Ga0316216_1015826 | Not Available | 608 | Open in IMG/M |
| Ga0316216_1016102 | Not Available | 604 | Open in IMG/M |
| Ga0316216_1017873 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | 579 | Open in IMG/M |
| Ga0316216_1018099 | Not Available | 576 | Open in IMG/M |
| Ga0316216_1020041 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 553 | Open in IMG/M |
| Ga0316216_1020179 | Not Available | 552 | Open in IMG/M |
| Ga0316216_1020556 | Not Available | 548 | Open in IMG/M |
| Ga0316216_1020594 | Not Available | 548 | Open in IMG/M |
| Ga0316216_1020763 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca | 546 | Open in IMG/M |
| Ga0316216_1020858 | Not Available | 545 | Open in IMG/M |
| Ga0316216_1021006 | Not Available | 543 | Open in IMG/M |
| Ga0316216_1021242 | Not Available | 541 | Open in IMG/M |
| Ga0316216_1022841 | Not Available | 525 | Open in IMG/M |
| Ga0316216_1023292 | Not Available | 521 | Open in IMG/M |
| Ga0316216_1024917 | Not Available | 508 | Open in IMG/M |
| Ga0316216_1024962 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | 507 | Open in IMG/M |
| Ga0316216_1025354 | Not Available | 504 | Open in IMG/M |
| Ga0316216_1025889 | Not Available | 500 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0316216_1000291 | Ga0316216_10002916 | F038985 | MPKKRRLGPQNGSGSSEPEKLPKIVNCATIKETEKLKETMVGVQVE |
| Ga0316216_1001465 | Ga0316216_10014651 | F013972 | MTVPYARQLNIEPGLLDQTSITLNLFDTILKIFITRVELERSWAAIERDISIHERLEARQRQLRNQP |
| Ga0316216_1003437 | Ga0316216_10034372 | F021718 | MSIRVYLHTSNKRAETPALLDSGATENFINHRYATHMRLPVKKLPTPRKVFNVDGT |
| Ga0316216_1003983 | Ga0316216_10039831 | F053726 | ILNHIVLEHLSGVKGGFPLEEAYYLKLSLFQGVEYFF |
| Ga0316216_1005642 | Ga0316216_10056421 | F013972 | MTVPVARQPNIEPGLSDQTNIALNLFNTILKTTNNRVDLERSWATIERDISIQENWEFQQRQLRNRQ |
| Ga0316216_1005960 | Ga0316216_10059601 | F089693 | MTVPAATQPNFQPELSNQNHIALNLFDTILKTANTWEELELSWTTIERDITTQEQLEARRRERRNLL |
| Ga0316216_1006082 | Ga0316216_10060821 | F033127 | VDEDLLIDTAISQRKSHKRGTNLLATLSLAAVFAAVGWFLVFWLRPLIKSVPFLPLGTVTTGLLVTGVIAFAIAGLLTAGALFFTNPLSRWGDAVPGTCPRCGKRALRQEKVEYAGWEEGHPEAGVRKGPRGIVTLCETPGCPYAAATVITPKAS |
| Ga0316216_1006888 | Ga0316216_10068881 | F079132 | MSTGTWATDPELDDALARAIRQLIAEAIEVGGAAGADSASTAA |
| Ga0316216_1007465 | Ga0316216_10074651 | F003275 | MAVAAIGAVVLLAAAGLAWTARLVHVSNLDALELASKVSVPDPVSALDWPELRVRAIVPQPGDQDLVLLLVGWPAHPQRAATLLLAIDSGDNRSVPLLSLWCANQAPVSPTRRDGAGLELRRRQSLDRV |
| Ga0316216_1007509 | Ga0316216_10075091 | F033047 | IGLFGWTINTATISLLSEYFGIKGINFNLKQFLYGYDTMGAGNDYTSKDFKAKLYNAMESDDGSDPSKQLDKGKGIDKGYNEGNDESGAKPLDKGKGIDRRVHRIELGPGHCTEPPFVTXSRVFPGLDPASVFFPKTINPGPGFNVPGGEVPIQDEICKHIDYNSHILNQFKKMDLKTAIEQRDNYLKYLQVINQKTTYAQETLSKVPETPTNDYEHRLKNTILRDLHNLNMQKIRAEAKATLLNSRIEFIQINTKPNV |
| Ga0316216_1007655 | Ga0316216_10076551 | F001359 | THGTTPGAVCDSAEFAKDMAVGQQVASGFRLAGFPVAADLLGHFLQGDGTEVDYRAGSSISQQALASSVFRALNQRVQRLIGGQLKAGQTQVRLSAAQLPTVAFESTNSDLYWGFRGTQGLAVNGSGVREKGRYVGTLTYVIRDSYGFPADDTLDGFGPPMRYLQTVCGAPQHAGGARWFPDAITVTVPLSQPT |
| Ga0316216_1008633 | Ga0316216_10086333 | F050616 | MGVLESLRAGLPRPRVMPGPVAASPVLSWIGDERIAI |
| Ga0316216_1008646 | Ga0316216_10086461 | F023843 | SSSKIEIKKFNGQSFELWKLKMEDLLVEKDQWIVVDLGTAPTGTST |
| Ga0316216_1008866 | Ga0316216_10088661 | F050832 | MVMDAAAADRTSLAKKKKDGLSGAMLRSILFSILHV |
| Ga0316216_1009632 | Ga0316216_10096321 | F033125 | ADVAEDADPGSSYRIGSRPTEFLVGEADTGTEVPLADGLVWSALHQDAIIVQLPERTGPLAGEPVAALLRRGPAADR |
| Ga0316216_1009670 | Ga0316216_10096701 | F004414 | VTLIQGGFGNRPSSNTRRRARRRRTARVAAPLLIPLALALTLGVILAVSSGAPTSHVTQQSGNSSHP |
| Ga0316216_1009925 | Ga0316216_10099251 | F013972 | MTVPSGRQPNVEPGLHDQTNIALNLFNTILQTTTNRVELERLWAAIERDISIQEQQEARQRQLRN |
| Ga0316216_1010041 | Ga0316216_10100411 | F089693 | MTIPRVIQPNIQLGISDQTNIALNLFSTTLRTANTREELERSWTAIEQDIATQEQLEARQRERRNPH |
| Ga0316216_1010267 | Ga0316216_10102672 | F040189 | AWIGLGWSYVGATEAGVTQTFNPTVQNISIEEQPTPVGVAVNTADLTFTCNLSEETLQNINLAWGNGGSIATTAAGAGQPGKSVLTLSTTFATLSAVLIAKNAFGFATVLSIPTVVSAGQVQTAFRRAAQQRLYPLTLTAICPFNSITFTELTAPATS |
| Ga0316216_1011090 | Ga0316216_10110901 | F013972 | MTMPIARQPNVVPSLLDQTNIALNLFDTILKTAITRVELECSWATIERDISIQERLEARQRQLRNQP |
| Ga0316216_1011328 | Ga0316216_10113281 | F013972 | MTVPVTRQPNIETGLSNQTHISLNIFDTILKITTTQVELEHSWATIERDINIQEQLEAKQQPRNQP |
| Ga0316216_1011767 | Ga0316216_10117672 | F018409 | INNGVLTQEGPVLVTDTSAGGAITTYTGTESQAPASGVPAP |
| Ga0316216_1011811 | Ga0316216_10118111 | F013972 | MTVPNVRQPNVDPGLQDQTSIALNLFNTILQTARNRTELEQSWAAIERDITIQE |
| Ga0316216_1011855 | Ga0316216_10118552 | F003567 | VVAGRLFLWSAACDEWVSCPPDEITWLDRSILSDNEDLTLHRAPRCAGLRYVHHRWELFSRD |
| Ga0316216_1011913 | Ga0316216_10119131 | F031186 | RTPKGTGERCTLAHIDSKKRRYACNEIKLLVKEFGTDRTARNGHARAATCATPQPEQ |
| Ga0316216_1012940 | Ga0316216_10129402 | F077566 | VSKLSSIAWLYIGAVIAAAAIVLAKGPYTGLDWSQIGVLALLL |
| Ga0316216_1013179 | Ga0316216_10131792 | F038754 | VSTQVTNEDGTEADLIEHLSHIHQKGTKGFTAEYLATLHETLHQRKREPQPEHRHP |
| Ga0316216_1013390 | Ga0316216_10133902 | F088857 | MTINPAPLAKLAEVSPPPRPEVEVDDLDLALLRALAADARLS |
| Ga0316216_1014019 | Ga0316216_10140191 | F013972 | MTVPIPTQPNVEPRLLNQTHIALNLFNTILKTTTNRVELEQSWAAIERDINIQEQFEARQPQRRNLP |
| Ga0316216_1015262 | Ga0316216_10152621 | F008968 | VSSYPVPDAAVLVSAGMIVAVPADLLATPLKSGRDLGDADRSALVTGGTERIRTGGTVVFCKVVAVAEAVVARDGQVRAEGRPYDHATLGPLEDWLDAQAGPGVIGGIAERVVLDTRHVKGRYRRLL |
| Ga0316216_1015547 | Ga0316216_10155471 | F013972 | MTVPNVRQPNIEPGLQDQTSIALNLFNTILQTATNRTELEQSWAAIERDITIQEQREERQRQLRN |
| Ga0316216_1015826 | Ga0316216_10158262 | F035113 | MSDSDDFTLLDDSALLSRRAEMRAQLERLPPASPGYAALSALYDESTEEVDDRARKAWSN |
| Ga0316216_1016102 | Ga0316216_10161021 | F050832 | MVMDAAATDKIKLMEEEKDGPSTAMLRSILLLVLHV |
| Ga0316216_1017873 | Ga0316216_10178731 | F082940 | DIPGWYSRQVARGIQRPVIYASASTMNDEILAVLSGAGIDRAKTRLWTAHYGLGEHICGPGTCGALSINADGTQWTSSALGLVLDQSLLNDDFFTAATSGPTVTEAELQSGQLSNGHGVFTVIPVPAGTAHQISFGLDNHAQNVPMASLRVAIFDTAWHVHPDVVIDGNRGLQTVAFPNAAKTGVVSVRRNDA |
| Ga0316216_1018099 | Ga0316216_10180991 | F102319 | MIPGPITSWSKSLLRYKTKPMVMDAAAADKTSLTKEEKDGPSRAMLRSILLSVLHV |
| Ga0316216_1020041 | Ga0316216_10200412 | F041108 | LLEYRDIYAGGRLVCSASPDVITIVNPATEEVVGAVPSAI |
| Ga0316216_1020093 | Ga0316216_10200931 | F066361 | MQKMVTHQEMGEGSHNRDEESDERRAIGNPPDLAETVRSLMVELQSCKADNERM |
| Ga0316216_1020179 | Ga0316216_10201791 | F066361 | MYRMVTHHEVGEGSHNRDEDFDERRAVGTPPYLAKTVRSLMVELQSCKADNERMTKEQEKQT |
| Ga0316216_1020556 | Ga0316216_10205561 | F065766 | MGEEKKDEGAGDPIKMLLEEALEKQRNMMMDNFAQILQRI |
| Ga0316216_1020594 | Ga0316216_10205941 | F023843 | MASNSKMEIEKFNGKHFELWKLKMEDVLVEKDQWIVVDPGTVPIGTSTND |
| Ga0316216_1020743 | Ga0316216_10207431 | F104140 | MKLENKLDGASNFRVWKTRIDLILAKNEVLDIVKVKTMKPEFE |
| Ga0316216_1020763 | Ga0316216_10207631 | F053726 | GDIFILNRLVLEHLSGVKGGCPLKEAYYLKLSLFQGIEYFS |
| Ga0316216_1020858 | Ga0316216_10208581 | F066361 | MVTHQEVGEGSHNRDEESDERRAVGTPTELAETVRSLMIELQSCKANNERMMKEEEKQTEINAVLLQSLSDLQRQMQHEPKMQNH |
| Ga0316216_1021006 | Ga0316216_10210062 | F037884 | MTKGVRTSGGRLFGPLIYGLILGSAAAQFALVPVMPVYTRLLGLSGLQQGLVLGATGLASLGVSVPAGR |
| Ga0316216_1021242 | Ga0316216_10212421 | F013972 | MTVPTPTQPNVEPGLLNQMHIILNLFNTILKTTTNWAELEQSWAAIELDITIQE |
| Ga0316216_1022841 | Ga0316216_10228411 | F065766 | MGDEKKDEGAGDPIKIFVEGALEKQRNAMMDNFAQILQXL |
| Ga0316216_1023292 | Ga0316216_10232921 | F013972 | MTVPNGRQPNVEPGLQDQTSIALNLFNTILQTATNRIELERSWAAIERDITIQEQREERRRRLR |
| Ga0316216_1024520 | Ga0316216_10245201 | F066361 | MVTHQEMGEGSHNRDEDSDERRAIGNPPDLAETVRSLMVELQSCKADN |
| Ga0316216_1024917 | Ga0316216_10249171 | F089693 | MTVPAVTQPNIEPGLSNQMHISLNLFDLILKTANNRDELEHSWVAIEQDITTQEQLEARRQERRNLP |
| Ga0316216_1024962 | Ga0316216_10249621 | F089310 | ATLADCLTSKHVCVSSDARSLVSQGQQSQLEQEVGNDDIYLVVAPSGSSGYDPAMRQLISTLGAKHGQFAVGFLDSRLKHFGAYNRGVVADGVAASVATNVVSQHRADGDIFAALQEFVQEIQQSAATPGTRPGPEGAPASQPSASGPPVGLIVLGVLILLGAGGYFF |
| Ga0316216_1025105 | Ga0316216_10251052 | F030497 | VRSRCRGRPVTELASTLTPCEIASQAAHAISVLTELTHSGGELSNPNDVRAIVTS |
| Ga0316216_1025354 | Ga0316216_10253541 | F064038 | LDGKNLAAEAARRARFRVHHVGTKLNEAELHELEALAAKRKETQAELIRGLILHELARDAEGLRPSAEMTEITACRLLLTYLLRPVATGQPMTDKAFDEMVEEVKKHKVRVARDRLKDHEARR |
| Ga0316216_1025889 | Ga0316216_10258891 | F024383 | ARRRLREYITAHRPDLIPATSRRTPMTAVRIAHADPVWMTRPESVLVVLADDAGHRALPVRLRRHDAKLWYLLSRPDDHHDAFDDHAEEMTGRLLQAAGVTLAGVTVTDLGPGVTATRIDVAGPGGTRPVTASLADGLTLAVITGAPLAADGPVMDRLARPVTGPD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |