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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300033546 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128948 | Gp0333685 | Ga0316213 |
| Sample Name | Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE2 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 58054920 |
| Sequencing Scaffolds | 37 |
| Novel Protein Genes | 42 |
| Associated Families | 30 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis | 1 |
| Not Available | 26 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Russulales → Russulaceae → Russula → Russula griseocarnosa | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Euphorbiaceae → Crotonoideae → Micrandreae → Hevea → Hevea brasiliensis | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. MH-G8 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Norway: Oslo | |||||||
| Coordinates | Lat. (o) | 59.9982 | Long. (o) | 10.7894 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002989 | Metagenome / Metatranscriptome | 515 | Y |
| F007381 | Metagenome / Metatranscriptome | 352 | Y |
| F009084 | Metagenome / Metatranscriptome | 323 | Y |
| F011735 | Metagenome / Metatranscriptome | 287 | Y |
| F013972 | Metagenome / Metatranscriptome | 266 | Y |
| F015225 | Metagenome / Metatranscriptome | 256 | Y |
| F017501 | Metagenome / Metatranscriptome | 240 | Y |
| F023843 | Metagenome / Metatranscriptome | 208 | Y |
| F033047 | Metagenome / Metatranscriptome | 178 | Y |
| F035000 | Metagenome / Metatranscriptome | 173 | Y |
| F037304 | Metagenome / Metatranscriptome | 168 | Y |
| F040273 | Metagenome / Metatranscriptome | 162 | Y |
| F046363 | Metagenome / Metatranscriptome | 151 | Y |
| F047603 | Metagenome | 149 | Y |
| F057544 | Metagenome / Metatranscriptome | 136 | Y |
| F061340 | Metagenome / Metatranscriptome | 132 | Y |
| F063865 | Metagenome / Metatranscriptome | 129 | Y |
| F065308 | Metagenome | 127 | Y |
| F065416 | Metagenome / Metatranscriptome | 127 | Y |
| F066361 | Metagenome / Metatranscriptome | 126 | Y |
| F078089 | Metagenome | 116 | Y |
| F083146 | Metagenome / Metatranscriptome | 113 | Y |
| F084586 | Metagenome / Metatranscriptome | 112 | Y |
| F089693 | Metagenome | 108 | Y |
| F101794 | Metagenome / Metatranscriptome | 102 | Y |
| F102190 | Metagenome / Metatranscriptome | 101 | Y |
| F102319 | Metagenome / Metatranscriptome | 101 | Y |
| F104140 | Metagenome / Metatranscriptome | 100 | Y |
| F105671 | Metagenome / Metatranscriptome | 100 | Y |
| F105764 | Metagenome / Metatranscriptome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0316213_1000352 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | 5511 | Open in IMG/M |
| Ga0316213_1000499 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis | 4118 | Open in IMG/M |
| Ga0316213_1001771 | Not Available | 1500 | Open in IMG/M |
| Ga0316213_1002542 | Not Available | 1226 | Open in IMG/M |
| Ga0316213_1005073 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Russulales → Russulaceae → Russula → Russula griseocarnosa | 873 | Open in IMG/M |
| Ga0316213_1005383 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Euphorbiaceae → Crotonoideae → Micrandreae → Hevea → Hevea brasiliensis | 851 | Open in IMG/M |
| Ga0316213_1005949 | Not Available | 814 | Open in IMG/M |
| Ga0316213_1006234 | Not Available | 798 | Open in IMG/M |
| Ga0316213_1007175 | Not Available | 746 | Open in IMG/M |
| Ga0316213_1008241 | Not Available | 706 | Open in IMG/M |
| Ga0316213_1009524 | Not Available | 663 | Open in IMG/M |
| Ga0316213_1009602 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium | 660 | Open in IMG/M |
| Ga0316213_1009922 | Not Available | 651 | Open in IMG/M |
| Ga0316213_1010238 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 643 | Open in IMG/M |
| Ga0316213_1010991 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 625 | Open in IMG/M |
| Ga0316213_1011455 | Not Available | 615 | Open in IMG/M |
| Ga0316213_1011522 | Not Available | 613 | Open in IMG/M |
| Ga0316213_1011568 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae | 612 | Open in IMG/M |
| Ga0316213_1012070 | Not Available | 602 | Open in IMG/M |
| Ga0316213_1012388 | All Organisms → cellular organisms → Bacteria | 595 | Open in IMG/M |
| Ga0316213_1012707 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 589 | Open in IMG/M |
| Ga0316213_1012976 | Not Available | 584 | Open in IMG/M |
| Ga0316213_1013167 | Not Available | 580 | Open in IMG/M |
| Ga0316213_1013567 | Not Available | 574 | Open in IMG/M |
| Ga0316213_1013964 | Not Available | 568 | Open in IMG/M |
| Ga0316213_1013974 | Not Available | 568 | Open in IMG/M |
| Ga0316213_1014011 | Not Available | 567 | Open in IMG/M |
| Ga0316213_1014041 | Not Available | 566 | Open in IMG/M |
| Ga0316213_1015085 | Not Available | 550 | Open in IMG/M |
| Ga0316213_1015131 | Not Available | 549 | Open in IMG/M |
| Ga0316213_1015305 | Not Available | 547 | Open in IMG/M |
| Ga0316213_1015905 | Not Available | 538 | Open in IMG/M |
| Ga0316213_1016042 | Not Available | 537 | Open in IMG/M |
| Ga0316213_1017016 | Not Available | 524 | Open in IMG/M |
| Ga0316213_1017544 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. MH-G8 | 518 | Open in IMG/M |
| Ga0316213_1018655 | Not Available | 506 | Open in IMG/M |
| Ga0316213_1019183 | Not Available | 501 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0316213_1000352 | Ga0316213_10003526 | F033047 | MKNYIQTTKKTINTILVNFTLAKFTGALVTIIMVALIKYLITGNLHIEYCEFXNNVAIGLFGWTINTATISLLSEYFGIKGINFNLKQFLYGYDTMGAGNDYTSKDFKAKLYNAMESDDGSDPSKQLDKGKGIDKGYNEGNDESGAKPLDKGKGIDRRVHRIELGPGHCTEPPFVTXSRVFPGLDPASVFFPKTINPGPGFNVPGGEVPIQDEICKHIDYNSHILNQFKKMDLKTAIEQRDNYLKYLQVINQKTTYAQETLSKVPETPTNDY |
| Ga0316213_1000499 | Ga0316213_10004991 | F102190 | VTECVVKALRDVKVTGSKPAGTKHPAVLKVGVAQAGCDPQVILTT |
| Ga0316213_1001771 | Ga0316213_10017713 | F013972 | MTVPNGRQPNVVPGLQDQTSIALNLFNTILQTATNRTELEQSWVVIERDITIQEQREERQ |
| Ga0316213_1002542 | Ga0316213_10025421 | F009084 | PTALRKAQQEVTEFHRFQKLSQDLVTVNEKICRLRPVEQQRGGWTEQEKKTLLRSIRK |
| Ga0316213_1005073 | Ga0316213_10050731 | F061340 | PSDIKVDMTSGXRHHYFDGSISELSTFIKSIEDDKIYLLIPLFASSKSLKNATLNLSEPFLVDNKSNPALIIKFILYQXHSSGFVVREGIKISFSFKFKRVXISHK |
| Ga0316213_1005383 | Ga0316213_10053831 | F046363 | MVLDAMVFWSMVLDASACINMYCNIERNIMKNQAGSPGFGIQGKISVHMCFMGYALALFIFFV |
| Ga0316213_1005949 | Ga0316213_10059491 | F065308 | LEKETTLSSLGVFCPPKSPLGGSFFSNSSLLILPNLLSSNTPIPFP |
| Ga0316213_1006234 | Ga0316213_10062342 | F013972 | MTVPVSRQPNIEPGLSDQTNIALDLFNTILQTTNNRVELERSWATIERDISIQENWEFQQRQLRNRQ |
| Ga0316213_1007175 | Ga0316213_10071751 | F011735 | PMWRGPYIVSKVLAKGAYELIDYDGIPLSEPRNGLYLKKYYA |
| Ga0316213_1007346 | Ga0316213_10073462 | F105764 | ENGQSQRFVLERALEHYLHNVVPSQRMVRPEVMAAYRRSNEKYRELYKKLAK |
| Ga0316213_1008241 | Ga0316213_10082412 | F089693 | MTVPAVTQPNIQPGLSNQIHIALNLFDTILKTANTREELEHSWAAIEQDITTQEQLEARQQERRNPH |
| Ga0316213_1009524 | Ga0316213_10095241 | F013972 | MTVPVVRQPNIEPGLTDQTHITLNLFDTILKMANTRVELERSWATIERDINIQEQLEARQRQPRNQP |
| Ga0316213_1009602 | Ga0316213_10096022 | F007381 | RWVRSNPGVRITWLENWITQRVHAALGTGTSHQTAEPVRLPAALLKPKIRALFELLDAARDVRRLASTGMNQQLALEALLVGGRVALGK |
| Ga0316213_1009922 | Ga0316213_10099221 | F017501 | GLAAFAFVCLVTAWSIAGKYSSLQGKLEDTKRVISQGPLVQPATEKAIYIAPDHAPGIDRAVIKLNRAAPLLMDVHIDLGYTQKLLQFRLFVDKKDQGRALVLNNLLKDSNGELRVTLNSTGLSAGTYSVRIEALPPRGIPIPIGWLIIEVT |
| Ga0316213_1010238 | Ga0316213_10102382 | F063865 | MKFIFNGIEKLGPAGLVLQAILISLLGIFLLVGFIVLRRWYRARYFRRRNDRTVALRSQWDEIVSGKISAETWRFDALDCDIVESILLDSIEMSSADNLPPLLECLRISGLLDLRIYEARTTRGWKQRT |
| Ga0316213_1010991 | Ga0316213_10109912 | F002989 | MVRFEGQAPEGRLVQELEFLVRTAIFKPANALVGHLLQGAADRIDAAYAPKPGEQRKGRQRLQVQGLFGCFDLERDYYYHEGK |
| Ga0316213_1011455 | Ga0316213_10114551 | F013972 | MTVPSSRQPNVEPGLQDQTSIALSLFNTILQTTTNRVELERSWASIERDISIQEQQEARQRQLRN |
| Ga0316213_1011522 | Ga0316213_10115221 | F084586 | VGAMFISVKRHEREKQELLNASNRLTDAILKTSSIGLFLMDSKGKIQPQVSASLGALFRRQDFANLTVEKLIGPLVSAKTLSVVRTYMTRLLDPARGETDAGNPLQDVEVKLTNADGSFAAAHYSFEFSSVDTPLEGRAWMVRVTDITARVAELRELEDLRVHVLTQGEILRSVLQAGGTRFGSFLQKTDAAMKSINGVLKKP |
| Ga0316213_1011568 | Ga0316213_10115682 | F035000 | LLEEYGPGRRMDELLKKAEELGLNYAEKAELSSLLKSKGRSRAPS |
| Ga0316213_1012070 | Ga0316213_10120701 | F013972 | MTVPSSRQPNIEPGLQDQTSIALNLFNTILQTTTNRVELECSWPAIERDISIQEQQEARQRQLRN |
| Ga0316213_1012388 | Ga0316213_10123881 | F037304 | RLLGVVLTDLSPASQLGLFEDTPPHTTRLDAALDEARARFGSGALRRGNTIK |
| Ga0316213_1012707 | Ga0316213_10127071 | F057544 | TAKLIGWLSEFGAVMIPTVGFFIRSQAFFHALMAARDAPALCGNARTLVGLGLTEREAQKYEDRLDQLGVLVYISCANGAKTDWAREVLRHTGAKEAATLEERLEESMSVAASA |
| Ga0316213_1012976 | Ga0316213_10129762 | F023843 | MERSLKIEIRKFNGQIFELWKLNMEDILVDRYRWF |
| Ga0316213_1013167 | Ga0316213_10131671 | F061340 | LTTKQITFLRDVPSGIKVDKTSGWRHHYFDGFNIYEISSYIKLIENDKIYLVIPFFSSSKSLSNARLRLSDPFLINNKSNPALIAKFIYDQXNSSGFNNSTILSFSFEFKRVXFTEF |
| Ga0316213_1013567 | Ga0316213_10135672 | F066361 | MHRMVTHHEVGGGSHNRDEDFDERRAVETPPDLVETVRSLIVELQSCKDDNERLIKEKEKQTKINAVLLQS |
| Ga0316213_1013750 | Ga0316213_10137501 | F065416 | SFSIPLCMSPTRSGYKALGLDLVDPLREQPRKPQRLPMGEEKKDEGAGDPIKMLKEGMLVKKLLYV |
| Ga0316213_1013964 | Ga0316213_10139641 | F011735 | IIKKVLKKGAYCPADFEGNALAELRNGLYLKKYYS |
| Ga0316213_1013974 | Ga0316213_10139741 | F011735 | MLGAEKFEAMWRVPYIIRRVLEKGAYELVDYDGIPLSEPRNGLYLKKYYA |
| Ga0316213_1014011 | Ga0316213_10140111 | F013972 | MTVPNGRQPNVEPGLQDQTSIALNLFNTILQTTTNRAELERSWAAIERDISIQEQQEARQRQLRN |
| Ga0316213_1014041 | Ga0316213_10140411 | F101794 | MRARNRRDRRARRGRYFLRDLAGFADIERLFATDIIGERLSPDVADDGASTDVIAP |
| Ga0316213_1014796 | Ga0316213_10147961 | F104140 | MKSENKLEGASNFRAWKTRIDLILAKNKVLDIVKGKIVKPEFKE |
| Ga0316213_1015085 | Ga0316213_10150852 | F013972 | MTVPNNRQPNIEPGLQDQTSIALNLFNNILQTTTNRVELERSWAAIDRDISIQEQREARQRQLRNQL |
| Ga0316213_1015131 | Ga0316213_10151311 | F083146 | AGDYLNTALVFSGIIAIAIVALILDACLRGLLLLADPGRRG |
| Ga0316213_1015305 | Ga0316213_10153051 | F040273 | MPYTRPIRRFYLTPPAVPTFVISVLLAVVALLAVYGHIPELHSIGGFTILLIAYVILLL |
| Ga0316213_1015905 | Ga0316213_10159051 | F102319 | MIPGPITSWSKNLFRYKTKPMVMDVVAADKTNLMEEEKDGPSRAVLRSILLLVLHV |
| Ga0316213_1015926 | Ga0316213_10159261 | F105671 | YYDHDFDLQRDGSEAAVSYILDHAQSGDAILFHIAEARVPYEFFKSLREKDSPTVSAAGPEIIYPRHGGHLDYRDFSGKPSSPFVHSIPGRYSRVWVVLMSNEAYGHPDPTTLMLNRILGESFPRLEKAQFSQVEVQVYSKP |
| Ga0316213_1016042 | Ga0316213_10160421 | F047603 | NSKRPSKKLDYVKIGLFKILKEIIEVTFKLDLLLRIKIYLV |
| Ga0316213_1017016 | Ga0316213_10170161 | F078089 | MGLPEGQVIEQAYVILLKLDKNKEVLVSNDWGQIGR |
| Ga0316213_1017544 | Ga0316213_10175442 | F015225 | MKSSHGTFAAIVWIVAGALLYNTEPEARLISWQTPVYFVVGMFAAAALFGNLSYATVRGVTHALVTTKIITAPTRRAAIGLTVTGYVLFALEAALIYLIARWTVRVMFN |
| Ga0316213_1017836 | Ga0316213_10178361 | F104140 | MTYSIKSKNKLEGDSNFRSWKTRIDLILSKNKVLDIMKGKIVEPRFE |
| Ga0316213_1018655 | Ga0316213_10186551 | F102319 | MIPGPITSWSKSLLRYKTKPMVMDVVAADKTNLTKEEKDGPS |
| Ga0316213_1019183 | Ga0316213_10191832 | F089693 | MTVPAATQPNIQPGLSNQIHIALNLFDTILKTANTREELERSWAAIEQDITTQEQLEARQRERRNPH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |