Basic Information | |
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IMG/M Taxon OID | 3300033529 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0135940 | Gp0344172 | Ga0316587 |
Sample Name | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 194375212 |
Sequencing Scaffolds | 52 |
Novel Protein Genes | 53 |
Associated Families | 38 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 39 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 3 |
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales | 2 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 2 |
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 2 |
Ecosystem Assignment (GOLD) | |
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Name | Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States |
Type | Host-Associated |
Taxonomy | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Unclassified |
Location Information | ||||||||
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Location | USA: Alabama | |||||||
Coordinates | Lat. (o) | 30.2619 | Long. (o) | -88.2383 | Alt. (m) | N/A | Depth (m) | .05 to .07 |
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