3300033164: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_12_05 R3

Overview

Basic Information

• IMG/M Taxon OID: 3300033164
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0136119 | Gp0356210 | Ga0334894
• Sample Name: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_12_05 R3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 296536633
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Netherlands: Wageningen, Gelderland
• Coordinates
  • Lat. (^o): 51.9691
  • Long. (^o): 5.6654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031354	Metagenome / Metatranscriptome	182	Y
F055749	Metagenome / Metatranscriptome	138	N
F061390	Metagenome / Metatranscriptome	132	Y
F072892	Metagenome	121	N
F089495	Metagenome / Metatranscriptome	109	N
F103496	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0334894_1009751	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium	3718
Ga0334894_1012396	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	3020
Ga0334894_1028536	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1490
Ga0334894_1032355	Not Available	1343
Ga0334894_1047626	Not Available	973
Ga0334894_1105429	Not Available	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0334894_1009751	Ga0334894_10097516	F072892	LAQFKSIVSDLETNNTLDNREWAGELLNNLATELYYEANCLTDVLYPPRKEEKDETMFKIDGIIDAERNPMSEDEFFELFIKWAEENKLQFGGGIGAYREEEEDVLAGK
Ga0334894_1012396	Ga0334894_10123961	F055749	MAKRAENPMNLIMIIAVGILTLTAIITVGPVVGGSIELAMPEVAADSPWNPSTNDNLPEGAATWTQLIPLVVLAV
Ga0334894_1028536	Ga0334894_10285364	F061390	AQFGQRTVMEALEAKMMGNWSVIYFPDVDSWEVSDYGDRNFVIKDGGKCNCGKGFGKNGSCIHQVLVELKKWDLEDELGVE
Ga0334894_1032355	Ga0334894_10323551	F089495	MGRPYLRKKHVTISLYDGTSTTPYTESITGYADVPELPEPVVDAPAEGYSPQGVFNSIEEGDDTITLPEFSITLDINDADVASGKYALDQWFNNHKESSGATALVSTNDGSAYLKKAIDGTTVSANLATDWFTIGMKVIFDTGGTGKAFGKNYKYVRPISASFSTSNKAQVTLRAQIVGAPTDIT
Ga0334894_1047626	Ga0334894_10476262	F031354	MKTTFDISDILYPIINVTSVTSTIDGRVYRDKKPLNSELQDIVIIPLTNYNGDEIIQFPVYMVNCFCKNFDNGLPNITKLKTITDAVIKVIEDYSATSNYYVFEITNQTLMQDTDQISMSYVNLRINCYIEK
Ga0334894_1105429	Ga0334894_11054292	F103496	MSINDSVRQMPLTKLIALCFTVFVCVLIVLDVTTLCPLTERSADLVKWLGSTIIVSYFGKSAYEHNVNVRKGEKS