NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300031587

3300031587: Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP3



Overview

Basic Information
IMG/M Taxon OID3300031587 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0131992 | Gp0331165 | Ga0315308
Sample NameFreshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyRestricted

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Dataset Contents
Total Genome Size636117364
Sequencing Scaffolds1007
Novel Protein Genes1085
Associated Families174

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea241
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon265
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota56
All Organisms → cellular organisms → Bacteria51
Not Available257
All Organisms → cellular organisms → Archaea → TACK group30
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria4
All Organisms → cellular organisms → Archaea → Euryarchaeota15
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium12
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes4
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → unclassified Thermoprotei → Thermoprotei archaeon4
All Organisms → cellular organisms → Archaea → Euryarchaeota → Theionarchaea → unclassified Theionarchaea → Theionarchaea archaeon1
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon SW_10_69_261
All Organisms → cellular organisms → Archaea → Euryarchaeota → Thermococci → Thermococcales → Thermococcaceae → Thermococcus → unclassified Thermococcus → Thermococcus sp.1
All Organisms → Viruses → Predicted Viral4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota3
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium8
All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix → Caldithrix sp. RBG_13_44_91
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium1
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon13
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_46_141
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon SMTZ1-451
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → Moorella group → Calderihabitans → Calderihabitans maritimus1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon ex4484_2311
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon BA21
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon BA11
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Sulfolobales → Sulfolobaceae → Acidianus → Acidianus hospitalis → Acidianus hospitalis W11
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon RBG_13_38_91
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division TA06 → candidate division TA06 bacterium DG_781
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biomefreshwater lakelake sediment
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationIndonesia: South Sulawesi
CoordinatesLat. (o)-2.7726Long. (o)121.4938Alt. (m)N/ADepth (m)1
Location on Map
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Associated Families

Associated Scaffolds

Sequences

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


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