3300031494: Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_N_R4 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031494
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132857 | Gp0330669 | Ga0314807
• Sample Name: Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_N_R4 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10910031
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SE220	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → land → biofilm material
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 40.7997
  • Long. (^o): -77.8629
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022207	Metagenome / Metatranscriptome	215	Y
F057344	Metagenome / Metatranscriptome	136	N
F089547	Metagenome / Metatranscriptome	109	Y
F098404	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0314807_102367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1206
Ga0314807_103023	All Organisms → cellular organisms → Bacteria	964
Ga0314807_104930	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	612
Ga0314807_105784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SE220	534

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0314807_102367	Ga0314807_1023674	F089547	VEIALTALSVALTSSIHVSTYVCLDDTVFALSTSDQMAIVRFKDREYRLPRRQSSIAIKYATEEATLYLDGDFAAFVAEDRWPP
Ga0314807_103023	Ga0314807_1030231	F022207	VTTFEGRTALGGIALQPVRLVLLLLVGPREGENDFLEFPSVEEAVAYARELYGERRFQLEGIEDRSGRSVVSYDVLHDRCRAPDRIQERRFG
Ga0314807_104930	Ga0314807_1049301	F098404	MRSFLVCVVLALAISCAAAQQTRPKLSETFESKGFVQIKHNGTLFFGEGWYHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEVIHAGHDKTPICHTKSLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPDILAYFGRFSAGNEFSYYIEQWKTDKPHSTWFEIPRECHLGPK
Ga0314807_105784	Ga0314807_1057841	F057344	MTSKRAHFFTACGPLFLAIAACQPASENMEDSEAELLMSNAGKGGAPGFTPQGWGWKPGSSVEISLFNEPDSQGKPNPSWKKILDEKVDTSTMFGFSADAPFYPVRRTLCGNPAPRQFMLAMAKDTKTGRTRMRPLPVDLYFTFQPCPHSGAPIP