NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300031342

3300031342: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_0mM_1 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300031342 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128781 | Gp0267058 | Ga0228537
Sample NameMetatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_0mM_1 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size17241331
Sequencing Scaffolds18
Novel Protein Genes23
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii9
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameChrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
TypeEngineered
TaxonomyEngineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Washington
CoordinatesLat. (o)47.6519Long. (o)-122.3113Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006495Metagenome / Metatranscriptome371Y
F007922Metagenome / Metatranscriptome342Y
F008934Metagenome / Metatranscriptome325Y
F022338Metagenome / Metatranscriptome214Y
F030329Metagenome / Metatranscriptome185Y
F035605Metagenome / Metatranscriptome171Y
F039966Metagenome / Metatranscriptome162N
F043744Metagenome / Metatranscriptome155Y
F047450Metagenome / Metatranscriptome149Y
F048727Metagenome / Metatranscriptome147Y
F053832Metagenome / Metatranscriptome140Y
F054473Metagenome / Metatranscriptome139Y
F055416Metagenome / Metatranscriptome138N
F056270Metagenome / Metatranscriptome137Y
F063743Metagenome / Metatranscriptome129Y
F068493Metagenome / Metatranscriptome124N
F074330Metagenome / Metatranscriptome119N
F080775Metagenome / Metatranscriptome114N
F087102Metagenome / Metatranscriptome110N
F090311Metagenome / Metatranscriptome108N
F104431Metagenome / Metatranscriptome100N
F104622Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0228537_101284Not Available1554Open in IMG/M
Ga0228537_101300All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1549Open in IMG/M
Ga0228537_102500All Organisms → Viruses → Predicted Viral1177Open in IMG/M
Ga0228537_103378All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1017Open in IMG/M
Ga0228537_104147All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii917Open in IMG/M
Ga0228537_104591All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales873Open in IMG/M
Ga0228537_105487All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii801Open in IMG/M
Ga0228537_107011All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila702Open in IMG/M
Ga0228537_107273All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales689Open in IMG/M
Ga0228537_108330All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales638Open in IMG/M
Ga0228537_108480All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii632Open in IMG/M
Ga0228537_110025All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii574Open in IMG/M
Ga0228537_110211Not Available568Open in IMG/M
Ga0228537_110616All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii556Open in IMG/M
Ga0228537_110736All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii552Open in IMG/M
Ga0228537_110902All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii547Open in IMG/M
Ga0228537_111391All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae532Open in IMG/M
Ga0228537_111728All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae522Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0228537_100535Ga0228537_1005351F054473VFGHDQDGSGEGPNQDMEDLEASPLFFGSAGVHTTDASLKEAAMWYGGPKGRRTTPLQHSSSSTDQSFQEMQDGPGCPQARFKGSHAFAGAAGNVGTPSALPANSDGTIAWASRKVNRPTDVMQDDFAAKDLDFRTERGAGANALPVLSQEHGAGSIKAVVFSGPDPKGNRQALGVGDLPPNATLLQKREQSRRAAVAHGCRSMAYVNESEFNSAAGLSSDEIFFANTADLVRRVKPVTRKSGYSGVTDVDMVVFGHDLEGGDKDGASMMKDKEFAGSAGASSAQIHTFHSNSRSAPKDVPQMRDQMDNIVFGHEMQDSAGQKRAEELFFALQKGSAGEATVEIGSRSFPSRLEKSSAVGGPAYAWGTLGNRHNEPRGDLKGAIPTDHAGPQYPPNYKGALGAPRDMLARKDCDANYTVGASNQVVKPRHRNDMDSSDARAILEENYRPDKTTSYGTLKSSHLLAPDEKVLGAAGKASRMINDYNAGPFTWVDVDTEEERRLSEFNAGSQKVADILNGDGYLERDTDPKAKMIPDEYNAIKGRKVDKATAAIYAKQRELVCGDSIAKLNILQPDLNYAMIDKDGDGVIEADEIAAAGGMQGYVFEDAKSEFEVMMQQKSFGQPKPFGSDPIDSWYGKPDYTTTRKDVERTVQSKLAAAQQKHLSYKPPTATPEGMRRHNFQPAPTIAEAIGTVRQEKVAYGTVHRNA
Ga0228537_101284Ga0228537_1012841F030329IFLAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMSTQFIKANATNTAQVRAQRQDEKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFKELASIFRSYCKSLGETATSDSSRTMDMEEFHDFVIDCGLETKLAIMKGAEPAVYTFNQMKECFAKADKSGKGLAGPAANSELVLYEFLNVITRVSFGRINPEYGELTMEHQDTIYPVPFCLEKTLREAILPKAH
Ga0228537_101300Ga0228537_1013001F056270AVMITSFCKNLLGEENTEECMNTATLIKAERYNWKRYSQTLPGQSLKEHKKWLEVWQRLEISDMYYFPLWEKGVHDILQKHFAELTLIFLAYCRSLLGSGSAEDAMEMEMAEFHDFIDECGLETKQVNFDLMTNNFIKANATNSGAVRDQHAESRRTSATKQDGRTTEVVAKVKGTNDGQEAKKDQELVLYEFIGLLVRIAFQRANPTFGNYGNKKAVVHLCNYPGSGMHDNGCLQTMIEDEILPRARKDTSAVFRETVMTELSVLKVLDEYRPKLKTWYNEATSDDSKQTDITDKLSMEQWMRVCDEKDLVGIWQCYRESDITGDPACKTEYKWRLSMPQVKMAFMDSQPSDQIGAAQSSGTDALAVLDFEEFLECCARLGIDKYRAVREVSPALAVQGFLQNLLGEKTPDEVVIEATYIHAKRYDAKETKPLKGESQADLDKWLDCWSRMEIMDVHLWPIWEKEVHDIMHPLFKELQLIFLAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLE
Ga0228537_101625Ga0228537_1016251F047450TLDFDEFIECLARCARDKYGEIKLMSLADGVRGIFMNILGEKSDEGVIRDATYIHAERYNWKLSKPLPGQTLAAHRKWLDCWQNIEIGDLHYFPLWEKGVFDCLQECFQDLTNIFAHYAKSIGGSTTAEDAVEMTMTEFKELVKDVGLETKDLKFDVMSNMFKKANATNSGDVRKQRMVEKGNADAQGEFAMNTGTQMALKKNIQQASPKRNAKLNKIRDDELDQELVLYEFVEVMIRIGFWRANPFHGINKLAAKLVPLPDCLHQMLHEVVLPNAKRDDSALFKERLAGDKSMLTALSRYEKRLKEWFDVHTQSMFLRGEGRKLQYQQWQDLLKKGWGIDQRAQGYTPGNGVGNWEIYQDSEITGDERCRNKFKISLSLPQAKFAFINSQSLDQLSVGQAKDTDAMTTLEFDEFKECIARCALDKYKPIRQMSPAVMITSFCKNLLGEENTEECMNTATLIKAERYNWKRYS
Ga0228537_102500Ga0228537_1025001F008934SSLAHLDKDGDGDIDSSEWAAGYAQLGASAPGVPNPAVWYGTLPDGPAFRITQIGMDKLYSAPSQLIDHPEYKDETGKGVIVGYAGHVPRARDKVGGSPLGHLPGTPVSPNGKVGIDMEAMMSGKFKRELPAGREKTFAQHECKPDYTPEARDKGVAGTQKPALYGEGIIPGYGGHKQGAKFNYGSTIYTNGRPKGGSAHDNYGGRNLASTGHGADSLASGDYNYKDGRIADAWIDDHGMGGKTEVWRRDAQGFKDGEKYIEFGEMAHVQVGKNRNH
Ga0228537_103378Ga0228537_1033781F043744RSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMCNQFIKANATNSAQVRAQRQDEKRDAQSRGNDEPQWKKKPAAKLKGTSSGEEAKKDQELVLYEFLNMLVRIAFWRANPTFGNFVDKDKDGKKDKEEPTPVAYALSNMLNEIILPRAKRENSAAFRQKEMQDSKLIAVLDSYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEKSEEDCMREATYIRAVRYDI
Ga0228537_104147Ga0228537_1041471F090311MSYAEEHAEASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLRSLRAAMNTWTALSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACISSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMV
Ga0228537_104591Ga0228537_1045911F006495TKASQQRPNMARVAYGATSAADDDDDIRFGSMGYTTELSEDYVTTAQYMARDLDDPYAYEKKPIHYIPGYTGHLPLNRERFGVNYREASAATIAMQKSKGVHHPVTDLSAPAPNYFGKTAIKKLNRSQKFIAADQVAQEEATTNQQKYGHPHAQAPFGVFPVGTAPGAMDYTATSSKVCPNNQADDPSSLASRIAHRRVARIKRNLNGGLFRPDPYDDSVVDDIASLDPRLKILQTRTEYRSDAAACMQTSAEELFDMRDDGAVYSGANALS
Ga0228537_104869Ga0228537_1048691F068493KRESMRKSLSHMLNRGLSRGFGAWLEMAIERAVFLQKLRKGLSRIVNRKLSLGFDRWNAAFAPRDDPMSKALLYFLNREIARGWTAWYTAWEELKAKRESMRRSLSHMLNRGLSRGLGAWSEFAVERKAFLQQLHRGLSRMVNRKLANGFASWVEQVEGSESMSKGLRHMMNRGLSKGWRAWQSMIEALKAKRESMRKSLSQMLNRGLSRGFSAWLEMAIERAVFLQKLRKGLSRIVNRKLALGFDRWIAAFAPRDDPMSKALLYFLNRELSRGWVAWYETW
Ga0228537_105487Ga0228537_1054871F039966AKMADPGAQRVRLRAREGEDVEWTHRVAQRASTLKNMMDDAPTEDGVYPLPTIAAAELEMLMEMCEADSMPARLELCSIPELFRLVEGASFLDAPGALNHAQRTLASRLEGKRADELREVLGATDDFGSVEDRLAALAEPAFSPEGQLSLATTGSAGPPALEPQPSLSGVEVTDDAKEAALGMVDVGTLAELKGVSRSWLVLARRVLCSRLGRCEGQPAPTELAEITDLNIKIIVDAGRSWEAAAAGRMLPSLARLRWEGFTVNVAA
Ga0228537_105714Ga0228537_1057141F053832GNSTPSPIFRTNRSGNGVGSSPGINPITPYTTASLDYRASWISGQTVADTKAAMTNPNIQGKLFGEAINNESKAFANSMARPAKPTVLPPPVKVQHYNETSGLERSLPTNVPDHPTAIQVNGLRQERTEHVMCPGHVFGVNSYDARVLCGNWAEERSDKSYNPSDLKASTGNDWWMETTYGEMTKNRSHLVRPPKGSNSDTMYTQKGSAFATGVKEESKSSNAEPCVPEVDDYLKGDHRSASRRPGNYVSYQAGRQHLIAA
Ga0228537_107011Ga0228537_1070111F022338VFHLIMLLNDIDAAPALPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAGQLRLPPDGVDKSAMEVLFDTLLLTQESESVLFYSVAGLYNLSNDASFAQMAATKKGVLAKLHSLAESANPDTVKYASGTVDNWRKHHSGAWPPQ
Ga0228537_107273Ga0228537_1072731F048727FRALVPVASGHMSFAMAVRFNTTVSAADARLANMSYAQKISEQRLQRSQERSKWYQLSEEERSEILFPAPKKIQTEYYDATPEQTRQVESHFRGEGLHWRPTAESQQVSVKEVIKNDVDNPCNKAPFQPRRPWHAGGGGYDSRLG
Ga0228537_108330Ga0228537_1083302F080775AMSTGEHLLHVLNTISSRKLVLEAELKEIDEDIASNESMSRKYGAEFFTEGAARLAQSRAEKQQKLAEIKQQLAETSTSVRQGKQLLGALAENYGNMAPPTYINPEGGQLYTQQFVTTRGDSPARVLTTSPILADRRG
Ga0228537_108480Ga0228537_1084801F074330RNSLESTSQFLESAMLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISSIMVLLQAFPYIVFDTTQMPSGPPRPLWRINP
Ga0228537_110025Ga0228537_1100251F087102GKLFVLSRVHTSMEPEVSFAKVQEIIDALSRECSMASHTAAPLVAGLKRFVEQRILPNGALDRITEQGFRLPADEVGALLDRYRWPHDAKRTQVMCILRKILEAVAEIRTTSDAAVRGSESIQEARLILNHSHERLIRTVESVLDEHAKRADPTLVLGHTLFVAVSRVAQAQEQENVRRLQSRSWPPLHSR
Ga0228537_110211Ga0228537_1102111F104431LCTAKSIAHMVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKETKAIKALHSVRDASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAAKPGCQLPRKHKVGNLHDQHSQLHMAEEAFK
Ga0228537_110616Ga0228537_1106161F063743AGQTLKEHKKWLEVWQRLEISDIYYFPLWEKGVHDLLQKHFNELTLIFLAYCRSLLGSDTAEDAMEMEMSEFHDFVVECGLETKHVSFDLMTNMFIKANATNSAAVRDQHSEGRRSAETKMDHLVGKGDTLATGRTTKVVGKVKGTNDGKEAKKDAELVLYEFMNLLVRIAFQRANPTFGNFGDQ
Ga0228537_110736Ga0228537_1107361F104622AGLVADSDLEGSLMLAVRAADIMVYCAFVPMILMGWDNLVCPPLKMFLKGEGGTLETLYLMFIALLLIPVSIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVGPFEEVQPLEGDAALLA
Ga0228537_110902Ga0228537_1109021F035605TVHAGLRRWLQVWKHVKVSTLAGFPLWEKDVFDMLFAQQDALGSIFRAYSASSLSGSNDGMEMVEFHDFVIETDLITDQYGFDTMKGQFHKANAGSDDNFLELHEFCTMLVRISFFRANPQYGMRKGKDQKNAHKFDEVPLPGCLNALLVENVLKLARRDTDGKRFANEVFNTTGVQAALQE
Ga0228537_111391Ga0228537_1113911F035605FKAYASSSLQGSATDMDMEEFHDFVIEAGLITDLYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRKGKDQKNADKFDEVPLPGCLSDMLTKLVLPNARRETHAQEFLEKIWPMSEVSSALDAQKEAIATFYEMVSAGRPFLELSQWFDALAGKLLFSDVTID
Ga0228537_111728Ga0228537_1117281F055416AARLATTMLRGRHTPHRPPARRLCALQESAAIRCNYPETYAYLKAKRDRHPIEDALEDYTQWTVMGEPLHPKITPIPKPGQPKPVEASSAIKKEETEEEYIRRRCEEFMHKSLSSRRGPGGKMFTIGGGGDAGVAYQVI
Ga0228537_112282Ga0228537_1122821F007922GDSVPLKDESPEEHAAFLAEFKQLDLSGLYGFPLWEAEVHDLLHANFRELASIFRGYCKSLGEGSSDESAKTMDLEEFHDFVIDVGLETKLHTNKAAAPALYVFEQMKEQFTRADKSGKGLAGPAANSELVLYEFLNVITRVSFYRLNPEYGELTMEHQDTLLPVPQCL

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