NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300031168

3300031168: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_D6_16mM_1 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300031168 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128781 | Gp0267112 | Ga0228591
Sample NameMetatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_D6_16mM_1 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size9768835
Sequencing Scaffolds11
Novel Protein Genes17
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii5
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila4

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameChrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
TypeEngineered
TaxonomyEngineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Washington
CoordinatesLat. (o)47.6519Long. (o)-122.3113Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007565Metagenome / Metatranscriptome348Y
F012945Metagenome / Metatranscriptome275Y
F022338Metagenome / Metatranscriptome214Y
F047450Metagenome / Metatranscriptome149Y
F061477Metagenome / Metatranscriptome131Y
F066385Metagenome / Metatranscriptome126N
F068493Metagenome / Metatranscriptome124N
F074330Metagenome / Metatranscriptome119N
F076927Metagenome / Metatranscriptome117Y
F079587Metagenome / Metatranscriptome115N
F082271Metagenome / Metatranscriptome113N
F087102Metagenome / Metatranscriptome110N
F095000Metagenome / Metatranscriptome105N
F100254Metagenome / Metatranscriptome102Y
F104431Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0228591_101690Not Available1049Open in IMG/M
Ga0228591_102318All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii900Open in IMG/M
Ga0228591_102541All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii859Open in IMG/M
Ga0228591_102811All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii813Open in IMG/M
Ga0228591_103505All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila727Open in IMG/M
Ga0228591_103658All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila710Open in IMG/M
Ga0228591_104840All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila612Open in IMG/M
Ga0228591_105136All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila590Open in IMG/M
Ga0228591_105364All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii577Open in IMG/M
Ga0228591_105742All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii554Open in IMG/M
Ga0228591_106004Not Available539Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0228591_101673Ga0228591_1016731F047450KSIGGSTTAEDAVEMTMSEFKDFVKDVSLETKDLRFDVMQNMFKKANALNNNDAHFQRKAEQGTSAAKEETAGSTSKALATTSPGRSKKAAAQRDDELDQELVLYEFVEVLIRISFWRSNPYHGIHKLATKLIPLPDCLVQMLQEVVLPNAKRDDSALFKEKLATDKALQSAIESYDSKLKEWFDVHTQSMFLRGQGRKLQFQQWQDLLKKGWGTDVRKVGFTPGGGVGSWQIYQDSEITGDERCRNIFKVSLSLPQAKFAFINSQSLDQLTVGQAKDTSDVTTLEYEEFKECVARCALDKYKPITQMSGAVKIKSFCRNLLGEATTEECLNEATLIKAARYDWLRYSKPL
Ga0228591_101690Ga0228591_1016901F061477RMTTGRTTEEKGKVKSKSDGTEAKKDAELVLYEFINMLVRIGFQRANPTFGNFGDKKPIKHLPGCLRAMIEDEILPRARKDTSAVFRETVMTELSVLKVLDEYRPKLKTWYNEATSDDSKQTDITDKLSMEQWMRVCDEKDLVGIWQCYRESDITGDPACKTEYKWRLSMPQVKMAFMDSQPSDQIGAAQSSGTDALAVLDFEEFLECCARLGIDKYRAVREVSPALAVQGFLQNLLGEKTPDEVVIEATYIHAKRYDAKETKPLKGESQADLDKWLDCWSRMEIMDVHLWPIWEKEVHDIMHPLFKELQLIFLAYTRSISEDSAEDAMEMSMDEFHDFVVDIGLETKQ
Ga0228591_101721Ga0228591_1017212F079587TPSIRSSSQSTMLSTLALATMIPTAFISIDTSPFFYNDLMAVQAMMRPPPSSSWRCTDEECMMSYPVSHLEDASLRLVLGDDGKTITLSGERKIEGCQCQPRDDVIITLPFTPSAPEALSSSIDKGRLTITLSKHAKIPEAKTILIKRQEPKTADASQIRFVPQESASASVVEEKMLDAFDKFRAVAALARKDGQETPAQASNASETVNVTAQA
Ga0228591_102318Ga0228591_1023181F082271RSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACISSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAEASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETA
Ga0228591_102464Ga0228591_1024641F087102SRRGRKRHGDGGSSTAGSDVALGAGATSQARTGATSRPRDAFSMIYEETIDAVFKADSRAAGLAKLRPYLDANMSKASADAFQECCGKLFVLSRVHTSMEPEVSFAKVQEIIDALSRECSMASHTAAPLVAGLKRFVEQRILPNGALDRITEQGFRLPADEVGALLDRYRWPHDAKRTQVMCILRKILEAVAEIRTTSDAAVRGSESIQEARLILNHSHERLIRTVESVLDEHAKRADPTLVLGHTLFVAVSRVAQAQEQENVRRLQSRSWPPLHSRVQTVFAEAEARAKA
Ga0228591_102541Ga0228591_1025411F104431CTAKSIAHMVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGLAESLLFDPGEAHGCLKQFEHVLVAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKETKALKALHSVRDASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHKVCASCVCTRG
Ga0228591_102811Ga0228591_1028111F082271RVEETARRAIKSMWLQSLQSATNTWVAISEARQRAQQALHSAASAFRGFGMRKAWNGWLGLLHDRQMMASAFYCWTHHLQRTGFASWLSSTVVSAMKQQLRQTLSCLSPTKRSMRKAIDSWSEYGYTMWALSRGAAALRLRKECVAFSTWHEHICIDGERQAAMWRAVASMIQSSLRASLNTWMSYAEEHVEASRVLADAMSSLQPEGHVVHIALNIWVGIMVQRRSMVVALAKLTKSEQLWGLHTWRAHAALVRWQRERVEETARRAIKS
Ga0228591_103160Ga0228591_1031601F007565TSAGFFGITYQGATNGLASVTLSIFNCDHPDDVAWCKHVFDYSTNNSGFLTKAKVPDFLRLFYRNRPQGNTLSGTYLYSYPENEKEFIDALFGKDGQLTFATLIEALKEAQGRFAEPAAPLEYGSAAVLRNDKTKHTRCVLNPQQRFRKPIATSQEVGWELYKEVKPELVASFNDTGGPGTPFRLRTSATTQFADAIEKITWGRSIGGEFSAYATRKLVAFGGQGMGV
Ga0228591_103505Ga0228591_1035051F095000LAAARDSLDAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL
Ga0228591_103658Ga0228591_1036581F022338AAPALPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAGQLRLPPDGVDKSAMEVLFDTLLLTQESESVLFYSVAGLYNLSNDASFAQMAATKKGVLAKLHSLAESANPDTVKYASGTVDNWRKHHSGAWPPQ
Ga0228591_104172Ga0228591_1041721F068493WYTTWEVLRAKRESMRKSLGHLLNRGLSRGFGAWLEMAIERAVFLQKLRKGLSRIVNRKLSLGFDRWNAAFAPRDDPMSKALLYFLNREIARGWTAWYTAWEELKAKRESMRRSLSHMLNRGLSRGLGAWSEFAVERKAFLQQLHRGLSRMVNRKLANGFASWVEQVEGSESMSKGLRHMMNRGLSKGWRAWQSMIEALKAKRESMRKSLGHLLHRGLSR
Ga0228591_104840Ga0228591_1048401F012945MSGNSLMFTDSVICFKELIDKEETAKRQWRGKYGMNKEGWRPVEPFERTGASNCKAELPSGMPSAALRNPYLYRDTVGEDGLAGGAPTRFGGRWDVLNKDKPIDYSHQTGQRVVKKGPHDCYCEIGYNCWSMAGKARTANFGMMGVFEREFYTNTPGELALVWDFKSEEEKVAHAAKIAAMQKQAR
Ga0228591_105136Ga0228591_1051361F066385FTYIMATTAIRELQMAALPAAVGTVAILYSNLANMFAMGKFRYANKGVEVHPYKPWSDTTPNAEEHFRAYKAFENGMEWTVLAVPALWLYVLYTPAVPHVGKFLPWTGALLAAAFAYYNTKYLEGYAQSVEARLPPFKARTNALMVLFTGALASMAASFLTTIGIVKMITPKVCERM
Ga0228591_105364Ga0228591_1053641F104431MVPTKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKEPKAIKALHSVRDASRMLAELNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHKVGNLHDQHS
Ga0228591_105742Ga0228591_1057421F076927MALACTVLPCTEASDVPGVYRGLQLAVPSHRRELQTAVSTSAGLTSALADTAVSRIVLASGTYNLIAELSIYRSVILEAAVAGSVTLKAQASSSSPRRVLMIDLGSPSGFVQLIGLNITGGYVNPVRAHVQKIPSPRWKNC
Ga0228591_106004Ga0228591_1060041F074330QFLESAMLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISSIMVLLQAF
Ga0228591_106364Ga0228591_1063641F100254LVRIAFWRANPQWGSKYNKKDLTPVPESTQILLEECILPKAKRDTSGEFKKVLAGDQATQAVLAEYREKLQNWLRPILRKERRIDNPNPQMTYKMWVALMDGPDPETRERGGSKPPCPKMVGEWFLAQESQITGDERTSRKNQITFKAKLSIPQCRWNFLRSQTIEQVQGGDV

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