Basic Information | |
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IMG/M Taxon OID | 3300031168 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128781 | Gp0267112 | Ga0228591 |
Sample Name | Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_D6_16mM_1 (Metagenome Metatranscriptome) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 9768835 |
Sequencing Scaffolds | 11 |
Novel Protein Genes | 17 |
Associated Families | 15 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 2 |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 5 |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 4 |
Ecosystem Assignment (GOLD) | |
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Name | Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
Type | Engineered |
Taxonomy | Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Unclassified |
Location Information | ||||||||
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Location | USA: Washington | |||||||
Coordinates | Lat. (o) | 47.6519 | Long. (o) | -122.3113 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007565 | Metagenome / Metatranscriptome | 348 | Y |
F012945 | Metagenome / Metatranscriptome | 275 | Y |
F022338 | Metagenome / Metatranscriptome | 214 | Y |
F047450 | Metagenome / Metatranscriptome | 149 | Y |
F061477 | Metagenome / Metatranscriptome | 131 | Y |
F066385 | Metagenome / Metatranscriptome | 126 | N |
F068493 | Metagenome / Metatranscriptome | 124 | N |
F074330 | Metagenome / Metatranscriptome | 119 | N |
F076927 | Metagenome / Metatranscriptome | 117 | Y |
F079587 | Metagenome / Metatranscriptome | 115 | N |
F082271 | Metagenome / Metatranscriptome | 113 | N |
F087102 | Metagenome / Metatranscriptome | 110 | N |
F095000 | Metagenome / Metatranscriptome | 105 | N |
F100254 | Metagenome / Metatranscriptome | 102 | Y |
F104431 | Metagenome / Metatranscriptome | 100 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0228591_101690 | Not Available | 1049 | Open in IMG/M |
Ga0228591_102318 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 900 | Open in IMG/M |
Ga0228591_102541 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 859 | Open in IMG/M |
Ga0228591_102811 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 813 | Open in IMG/M |
Ga0228591_103505 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 727 | Open in IMG/M |
Ga0228591_103658 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 710 | Open in IMG/M |
Ga0228591_104840 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 612 | Open in IMG/M |
Ga0228591_105136 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 590 | Open in IMG/M |
Ga0228591_105364 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 577 | Open in IMG/M |
Ga0228591_105742 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 554 | Open in IMG/M |
Ga0228591_106004 | Not Available | 539 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0228591_101673 | Ga0228591_1016731 | F047450 | KSIGGSTTAEDAVEMTMSEFKDFVKDVSLETKDLRFDVMQNMFKKANALNNNDAHFQRKAEQGTSAAKEETAGSTSKALATTSPGRSKKAAAQRDDELDQELVLYEFVEVLIRISFWRSNPYHGIHKLATKLIPLPDCLVQMLQEVVLPNAKRDDSALFKEKLATDKALQSAIESYDSKLKEWFDVHTQSMFLRGQGRKLQFQQWQDLLKKGWGTDVRKVGFTPGGGVGSWQIYQDSEITGDERCRNIFKVSLSLPQAKFAFINSQSLDQLTVGQAKDTSDVTTLEYEEFKECVARCALDKYKPITQMSGAVKIKSFCRNLLGEATTEECLNEATLIKAARYDWLRYSKPL |
Ga0228591_101690 | Ga0228591_1016901 | F061477 | RMTTGRTTEEKGKVKSKSDGTEAKKDAELVLYEFINMLVRIGFQRANPTFGNFGDKKPIKHLPGCLRAMIEDEILPRARKDTSAVFRETVMTELSVLKVLDEYRPKLKTWYNEATSDDSKQTDITDKLSMEQWMRVCDEKDLVGIWQCYRESDITGDPACKTEYKWRLSMPQVKMAFMDSQPSDQIGAAQSSGTDALAVLDFEEFLECCARLGIDKYRAVREVSPALAVQGFLQNLLGEKTPDEVVIEATYIHAKRYDAKETKPLKGESQADLDKWLDCWSRMEIMDVHLWPIWEKEVHDIMHPLFKELQLIFLAYTRSISEDSAEDAMEMSMDEFHDFVVDIGLETKQ |
Ga0228591_101721 | Ga0228591_1017212 | F079587 | TPSIRSSSQSTMLSTLALATMIPTAFISIDTSPFFYNDLMAVQAMMRPPPSSSWRCTDEECMMSYPVSHLEDASLRLVLGDDGKTITLSGERKIEGCQCQPRDDVIITLPFTPSAPEALSSSIDKGRLTITLSKHAKIPEAKTILIKRQEPKTADASQIRFVPQESASASVVEEKMLDAFDKFRAVAALARKDGQETPAQASNASETVNVTAQA |
Ga0228591_102318 | Ga0228591_1023181 | F082271 | RSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACISSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAEASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETA |
Ga0228591_102464 | Ga0228591_1024641 | F087102 | SRRGRKRHGDGGSSTAGSDVALGAGATSQARTGATSRPRDAFSMIYEETIDAVFKADSRAAGLAKLRPYLDANMSKASADAFQECCGKLFVLSRVHTSMEPEVSFAKVQEIIDALSRECSMASHTAAPLVAGLKRFVEQRILPNGALDRITEQGFRLPADEVGALLDRYRWPHDAKRTQVMCILRKILEAVAEIRTTSDAAVRGSESIQEARLILNHSHERLIRTVESVLDEHAKRADPTLVLGHTLFVAVSRVAQAQEQENVRRLQSRSWPPLHSRVQTVFAEAEARAKA |
Ga0228591_102541 | Ga0228591_1025411 | F104431 | CTAKSIAHMVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGLAESLLFDPGEAHGCLKQFEHVLVAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKETKALKALHSVRDASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHKVCASCVCTRG |
Ga0228591_102811 | Ga0228591_1028111 | F082271 | RVEETARRAIKSMWLQSLQSATNTWVAISEARQRAQQALHSAASAFRGFGMRKAWNGWLGLLHDRQMMASAFYCWTHHLQRTGFASWLSSTVVSAMKQQLRQTLSCLSPTKRSMRKAIDSWSEYGYTMWALSRGAAALRLRKECVAFSTWHEHICIDGERQAAMWRAVASMIQSSLRASLNTWMSYAEEHVEASRVLADAMSSLQPEGHVVHIALNIWVGIMVQRRSMVVALAKLTKSEQLWGLHTWRAHAALVRWQRERVEETARRAIKS |
Ga0228591_103160 | Ga0228591_1031601 | F007565 | TSAGFFGITYQGATNGLASVTLSIFNCDHPDDVAWCKHVFDYSTNNSGFLTKAKVPDFLRLFYRNRPQGNTLSGTYLYSYPENEKEFIDALFGKDGQLTFATLIEALKEAQGRFAEPAAPLEYGSAAVLRNDKTKHTRCVLNPQQRFRKPIATSQEVGWELYKEVKPELVASFNDTGGPGTPFRLRTSATTQFADAIEKITWGRSIGGEFSAYATRKLVAFGGQGMGV |
Ga0228591_103505 | Ga0228591_1035051 | F095000 | LAAARDSLDAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL |
Ga0228591_103658 | Ga0228591_1036581 | F022338 | AAPALPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAGQLRLPPDGVDKSAMEVLFDTLLLTQESESVLFYSVAGLYNLSNDASFAQMAATKKGVLAKLHSLAESANPDTVKYASGTVDNWRKHHSGAWPPQ |
Ga0228591_104172 | Ga0228591_1041721 | F068493 | WYTTWEVLRAKRESMRKSLGHLLNRGLSRGFGAWLEMAIERAVFLQKLRKGLSRIVNRKLSLGFDRWNAAFAPRDDPMSKALLYFLNREIARGWTAWYTAWEELKAKRESMRRSLSHMLNRGLSRGLGAWSEFAVERKAFLQQLHRGLSRMVNRKLANGFASWVEQVEGSESMSKGLRHMMNRGLSKGWRAWQSMIEALKAKRESMRKSLGHLLHRGLSR |
Ga0228591_104840 | Ga0228591_1048401 | F012945 | MSGNSLMFTDSVICFKELIDKEETAKRQWRGKYGMNKEGWRPVEPFERTGASNCKAELPSGMPSAALRNPYLYRDTVGEDGLAGGAPTRFGGRWDVLNKDKPIDYSHQTGQRVVKKGPHDCYCEIGYNCWSMAGKARTANFGMMGVFEREFYTNTPGELALVWDFKSEEEKVAHAAKIAAMQKQAR |
Ga0228591_105136 | Ga0228591_1051361 | F066385 | FTYIMATTAIRELQMAALPAAVGTVAILYSNLANMFAMGKFRYANKGVEVHPYKPWSDTTPNAEEHFRAYKAFENGMEWTVLAVPALWLYVLYTPAVPHVGKFLPWTGALLAAAFAYYNTKYLEGYAQSVEARLPPFKARTNALMVLFTGALASMAASFLTTIGIVKMITPKVCERM |
Ga0228591_105364 | Ga0228591_1053641 | F104431 | MVPTKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKEPKAIKALHSVRDASRMLAELNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHKVGNLHDQHS |
Ga0228591_105742 | Ga0228591_1057421 | F076927 | MALACTVLPCTEASDVPGVYRGLQLAVPSHRRELQTAVSTSAGLTSALADTAVSRIVLASGTYNLIAELSIYRSVILEAAVAGSVTLKAQASSSSPRRVLMIDLGSPSGFVQLIGLNITGGYVNPVRAHVQKIPSPRWKNC |
Ga0228591_106004 | Ga0228591_1060041 | F074330 | QFLESAMLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISSIMVLLQAF |
Ga0228591_106364 | Ga0228591_1063641 | F100254 | LVRIAFWRANPQWGSKYNKKDLTPVPESTQILLEECILPKAKRDTSGEFKKVLAGDQATQAVLAEYREKLQNWLRPILRKERRIDNPNPQMTYKMWVALMDGPDPETRERGGSKPPCPKMVGEWFLAQESQITGDERTSRKNQITFKAKLSIPQCRWNFLRSQTIEQVQGGDV |
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