NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300031088

3300031088: Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLB.R1



Overview

Basic Information
IMG/M Taxon OID3300031088 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133512 | Gp0324013 | Ga0308157
Sample NamePhyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLB.R1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size1807510683
Sequencing Scaffolds1
Novel Protein Genes18
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLeaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States
TypeHost-Associated
TaxonomyHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036230Metagenome / Metatranscriptome170Y
F081964Metagenome113Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0308157_10002201All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae33534Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0308157_10000856Ga0308157_1000085657F081964MPIVCYRDQIIRAVTGGKPAMVFHVVDETALRRLCDRLAEAERAVEILRAKGHGQPGLLLDELAELVPAIK
Ga0308157_10002201Ga0308157_1000220151F036230MTEHEIVQVNPEREMFGGCMVVVTEVKPWGIQGYVQSAGVPGQQYIRLKTEEFQPTGGKAVWVVP
Ga0308157_10004651Ga0308157_1000465115F081964MRTPVEVFRDQIIRAVTGNKPAMVFHVVDETALLRLCNRLAEDERAHALLRAKGYGGTGLLLDELAALVPNAR
Ga0308157_10014454Ga0308157_100144547F081964MAALHSRTEALAGVAMSMPVEVYRDQIIRAVTGNQPAMVFRVVDETALRRLSDRLAESERAHALLRAKGYGGTGLLLDELAALVPNAS
Ga0308157_10014505Ga0308157_100145055F081964VSQPVVSYRHAIIRAVTGNRPAMVFHVVDETALHSICERLAESERAFEILRAKGYGKSGQLLHEVAALVPNAS
Ga0308157_10018533Ga0308157_1001853312F081964VSQPVVSYRHAIIRAVTGGRPAMVFHVVDETALRNICERLAESERAFEILRAKGYGRPGLLLQEVAALVPENK
Ga0308157_10026882Ga0308157_100268826F081964MSMPVEVYRDQIIRAVTGNQPAMVFRVVDETALRRLSDRFAESERAHALLRAKGYGGTGLLLDELAALVPNAR
Ga0308157_10029301Ga0308157_100293016F081964VSQSVQCYRHAIIRAVTGNRPAIIWNVIDGTALNRICERLAEAERAAEMLQAKGYGGPGLLLHEVAALVPAAHTHDKR
Ga0308157_10048653Ga0308157_100486534F081964MRRAAIFFRGAPVSQPIDCYRHAIIRAVTGNRPAIVWNVTDGAALDRICERLAEAERAFEILRAKGHGRPGLLLHEVAALVPDIK
Ga0308157_10049395Ga0308157_100493956F081964VSMPIVCYRDQIIRAVTGGKPAMVFHVVDETALRRLCDRLAEAERAVEILRAKGHGHPGLLLDELAELVPAIK
Ga0308157_10080768Ga0308157_100807684F081964MRFVWPRTAVYPAMRTPVEVFRDQIIRAVTGNKPAMVFHVVDETALLRLCNRLAEDERAHALLRAKGYGGTGLLLDELAALVPNAR
Ga0308157_10132234Ga0308157_101322343F081964VSQPVVSYRHVIIRAVTGGCPAMVFHVVDETALRNICERLAESERAFEILRAKGYGRPGLLLQEVAALVPNAC
Ga0308157_10214169Ga0308157_102141693F081964MPIVCYRDQIIRAVTGGKPAMVFHVVDETALLRLCERLVESERAHSLLRAKGYGSTGMLLDELAALVPVKT
Ga0308157_10261326Ga0308157_102613263F081964VSQPVDCYRHAIIRAVTGNRPAIVWNVTDGAALDRICERLAEAERAFEILRAKGHGRPGLLLHEVAALVPDVK
Ga0308157_10347713Ga0308157_103477133F081964VSMPIVCYRDQIIRAVTGGKPAMVFHVVDETALRRLCDRLAEAERAVEILRAKGHGQPGLLLDELAELVPAIK
Ga0308157_10373655Ga0308157_103736552F081964MSMPVEVAYRDQIIRAVTGNQPAMVFRVVDETALRRLSDRLAESERAHALLRAKGYGGTGLLLDELAALVPNAS
Ga0308157_10664156Ga0308157_106641562F081964VCYRDQIIRAVTGGKPAMVFHVVDEAALLRLCERLAESERAHSLLRAKGYGGTGLLLDELAALVPNAS
Ga0308157_10801606Ga0308157_108016061F081964VSMPTECYRDQIIRAVTGNKPAMVFHVVDETALRRLSERLSEAERAATILQAKGYGADGLLLDEVAARVPAAHTHDTR
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