Sample 3300030747

Basic Information
IMG/M Taxon OID	3300030747 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0068071 \| Gp0115366 \| Ga0074024
Sample Name	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 12 (Eukaryote Community Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 12 (Eukaryote Community Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	167850570
Sequencing Scaffolds	25
Novel Protein Genes	27
Associated Families	22

Dataset Contents

Total Genome Size

167850570

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	2
All Organisms → cellular organisms → Eukaryota	3
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Myxogastria → Myxogastromycetidae → Physariida → Physaraceae → Physarum → Physarum polycephalum	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Rhipicephalinae → Rhipicephalus → Boophilus → Rhipicephalus microplus	3

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Myxogastria → Myxogastromycetidae → Physariida → Physaraceae → Physarum → Physarum polycephalum

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Rhipicephalinae → Rhipicephalus → Boophilus → Rhipicephalus microplus

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Ecosystem Assignment (GOLD)

Name

Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → forest floor → wood
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → forest floor → wood

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	Sweden: Dalarna County
Coordinates	Lat. (^o)	60.97	Long. (^o)	15.87	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Sweden: Dalarna County

Coordinates

Lat. (^o)

60.97

Long. (^o)

15.87

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F006377	Metagenome / Metatranscriptome	374	Y
F006461	Metagenome / Metatranscriptome	372	Y
F008027	Metagenome / Metatranscriptome	340	Y
F010295	Metagenome / Metatranscriptome	305	Y
F012427	Metagenome / Metatranscriptome	280	N
F012845	Metagenome / Metatranscriptome	276	Y
F015184	Metagenome / Metatranscriptome	256	Y
F018299	Metagenome / Metatranscriptome	235	Y
F027707	Metagenome / Metatranscriptome	193	Y
F028371	Metagenome / Metatranscriptome	191	Y
F033655	Metagenome / Metatranscriptome	176	Y
F044225	Metagenome / Metatranscriptome	154	Y
F049342	Metagenome / Metatranscriptome	146	Y
F052339	Metagenome / Metatranscriptome	142	N
F054554	Metagenome / Metatranscriptome	139	Y
F059585	Metagenome / Metatranscriptome	133	Y
F060491	Metagenome / Metatranscriptome	132	Y
F071833	Metagenome / Metatranscriptome	121	Y
F079514	Metagenome / Metatranscriptome	115	Y
F085035	Metagenome / Metatranscriptome	111	N
F096412	Metagenome / Metatranscriptome	104	Y
F102248	Metagenome / Metatranscriptome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0074024_1000249	Not Available	770	Open in IMG/M
Ga0074024_1001032	Not Available	728	Open in IMG/M
Ga0074024_1002813	Not Available	1049	Open in IMG/M
Ga0074024_1011097	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	588	Open in IMG/M
Ga0074024_1023725	Not Available	870	Open in IMG/M
Ga0074024_1112009	All Organisms → cellular organisms → Eukaryota	512	Open in IMG/M
Ga0074024_1113343	Not Available	519	Open in IMG/M
Ga0074024_1215086	All Organisms → cellular organisms → Eukaryota	540	Open in IMG/M
Ga0074024_1219165	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Myxogastria → Myxogastromycetidae → Physariida → Physaraceae → Physarum → Physarum polycephalum	617	Open in IMG/M
Ga0074024_1235938	Not Available	562	Open in IMG/M
Ga0074024_1273322	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida	542	Open in IMG/M
Ga0074024_1275285	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Rhipicephalinae → Rhipicephalus → Boophilus → Rhipicephalus microplus	593	Open in IMG/M
Ga0074024_1283334	Not Available	809	Open in IMG/M
Ga0074024_1284076	Not Available	602	Open in IMG/M
Ga0074024_1284166	Not Available	577	Open in IMG/M
Ga0074024_1302365	All Organisms → cellular organisms → Eukaryota	716	Open in IMG/M
Ga0074024_1304481	Not Available	684	Open in IMG/M
Ga0074024_1310814	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Myxogastria → Myxogastromycetidae → Physariida → Physaraceae → Physarum → Physarum polycephalum	593	Open in IMG/M
Ga0074024_1315757	Not Available	726	Open in IMG/M
Ga0074024_1329593	Not Available	800	Open in IMG/M
Ga0074024_1336798	Not Available	651	Open in IMG/M
Ga0074024_1348914	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	896	Open in IMG/M
Ga0074024_1349386	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Rhipicephalinae → Rhipicephalus → Boophilus → Rhipicephalus microplus	640	Open in IMG/M
Ga0074024_1350437	Not Available	650	Open in IMG/M
Ga0074024_1352576	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Rhipicephalinae → Rhipicephalus → Boophilus → Rhipicephalus microplus	632	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074024_1000249	Ga0074024_10002491	F059585	RVIDMKRLDDDSIVVKKLMHVRKFGLLWAYTMEEMKIDCKTKILDLKSQVLAASKCLPTDVVEKICYKATNNEHGQTLYTKFLESRSTIQKYYGKLNSGFEKGCKIVEEKCREVLNNPMTNNNNNTQE
Ga0074024_1001032	Ga0074024_10010321	F010295	LKALSSEGVLSETEVVGLLGSSKGSEFGLMVSKGSSEGSSLSVTKVGGVVFALNTFSDLFSVSLVDDGQVLSNGLSDNLDFAELGGGGATSDLEGSETVKFLLVLFESLDEFVVSGGSK
Ga0074024_1002813	Ga0074024_10028131	F049342	AKNKFFPILNAIFDFMAYTYNSGFSKLDLEKYVETILDMLTSDILFDSFFQNYVTHLRLIRTKKKFAFLFQRRLETDCFWIWSFSFLASMKNHYLGILLSFEETFLEGGLILKWKNTESWVNNFIAFCYEKGIGARKDLNKAAELYKKDINQMPRVLYSRYRKVLVIKEKKAKDLHLAQDEEELDIDVQAEDLKQKIEERFEDTNRMDCYLFYVYGKIYEKIDEDVDRAMEWYQKGVDVDTDSCLKNHLLCNEAWRMKCKKRLLKLQARKGLQVLIFNKNRED
Ga0074024_1011097	Ga0074024_10110971	F033655	MGLLLGSGSFNNETRKVSLADSLEHFLSILSNSNSVDVDLRLLRNVVQSSFSFLFLDLEGDTSDGSSLDTLHQVSSETSNLISHSLGGEDGNITQDDLVEMEVIGELAVVLFDQNLSGSLDGLSLNSAHY
Ga0074024_1023725	Ga0074024_10237251	F028371	LDLVVDPSFLDSTSNDSLNVSGLLDFSSSDFSELLLTEFNSVMSQIPLSERSGIDLDDGALDQGVGSDQFVVRGVVDDDKNLSLSGDLLRRPGVVSGVELEGLELVVTTSNSVSSDSLFTDLGKGSGTAGFVLLLLLVDGHTTTGKSSLVSGISR
Ga0074024_1070199	Ga0074024_10701992	F052339	TTTPHASMGILKKLFNNKKKSASESMSLTEESGYYEFEVKQWTKFGQTMRDKSSEIRMLIVNQEGISVVNVYSKETILSIPFFDMKWFELHPAKNEWLVKTAGEDKGIIYFSSKDAATIHKVAVKALKTLIRSRRLRLNEASADNLDIRSVIAEMADDCEDKIDLDIIAPDSPQLRKLNFAAKSSPMGRAQA
Ga0074024_1112009	Ga0074024_11120091	F006461	VAKVLIVSLLLVCIHGWGITVVNNVAPCPQLPAYCTTKLFYAGGGQTSVCRGNSMHLDGSQIPATGLGIQENGLYCRSNGNEAGCINPDNAGMQLVVNQGNCESFTLNNPFYCGQHPPNAKTIIDVAMSGTWPNCVATLTRKASAPGCSKTC
Ga0074024_1113343	Ga0074024_11133431	F079514	MIITSVVHYGSIHSLWGIFAAGCALALAGLIGIFASLTLRPALTGLFFFTLAVLWLCSLAVLIVNACFLNHNMNNQCASRGDARFSNGCERVRDYHIVLYSVFGPLVALFVPTVLLAAGYLYRTTSLYRKQEFDAYANQQGPVPIGSSRM
Ga0074024_1215086	Ga0074024_12150861	F006461	NSSSMRSAAILLVSLFLVGIHGWQLEVINKVNPCAGRSYCTLKLFTAGGGQSLLCEGQATTIQGGDIPPTGLGIQENGEYCRCCGNEAGCSNPDNAGMQLIVNNGNCGSIQLNNPFYCGVHPPNAKSVVGVQMGGSWPNCQATLYRLGNAPGCQSSC
Ga0074024_1219165	Ga0074024_12191651	F085035	TATDSQFYSLIDPGIPSSIYAYTYHQINRSDVRGKPTMAETFAEIVKWVNKFGTKGAEGEDLFVFVMPHFAKMEKITLAYELSRANLEAPKNWVFVNATNILEKNLPFLDKIQLDHIYSHLYGVAPQRLHRADADTTTVKQCLAKVFPDAERFKDAIFLEMSQDVTKFL
Ga0074024_1235938	Ga0074024_12359381	F008027	ISPGQVPVMYQTSYDGIKILVANYGGRDVTSIAQQQHRVNAHFLASNASFGDPMPGTLKFLHVIYSVQGVVGSVSIRENEQFHLPIPRLTILSARYGSADVTEKVKALVSYGADQCHFQVENAHFGDPNPNILKNFSVAYVRNGELRSVVAREHESVHLV
Ga0074024_1273322	Ga0074024_12733222	F015184	LFYNFQINLFYFWHWQHCLFSAATVSLKNGKGCEILGAPKAHGQHSTLGTQFGFSQTNSHFGLGQAGFLHFQSHFGSSHTGSHSGLGA
Ga0074024_1275285	Ga0074024_12752851	F102248	AFSDMQNLANKIKCDVERNLNTSFKNFDVLEHKALEDPEHTSYFMKVKTDDNGHVKLKTTQKTPDSEWITHVEEYDRGAPGSMITHDYSNTTQPSITHEA
Ga0074024_1282424	Ga0074024_12824242	F027707	FGFTPVKIEYEVADIHDGQITAMTPDGQEKFFNVPEDPEVGEKLVGEFTDNAAKGGDQFWIITVVYAPRMVGKKWMANMLVESYKAGKSAE
Ga0074024_1283334	Ga0074024_12833341	F012845	WIWSFAFLTSKKNHYLDVLLSFEETFTDGSLILKWKNTESWVNNFIAICHEKGVGTRKNLDKALQLYQKDMNMMPRVLFSRFRKALVIKAKKSAGEPLNLKEVSHNFVESESEDLKQKIEERLEDSNRMDCYLFYVYGKIYEKMDDDIERAIEWYQKGVDVSTDSCLKNHLLCNEAWRMKCKKRLLKLQSRKGLQVSIVNKNRED
Ga0074024_1284076	Ga0074024_12840761	F096412	MFNRLVTLKSLVSRTQAVAPKFTFRPMASYSNMISYQDPTLAPEERPNYYNVYDEEVFTNNNFGEATETEHKPTVVEDSNEPVFNSTFDDEVL
Ga0074024_1284166	Ga0074024_12841661	F071833	ALMNFVNETQDPLQKINHVQVLIKRKLIEPFEKLSKENVECYNLVKGSKEGNGQYIERVNKCLDSWQRHFESVENSTNKYLSNLRENEAKHFSRLFHCTNAINEPDVQACRREENERFANELVEAFPPL
Ga0074024_1302365	Ga0074024_13023651	F018299	LNIGTVLSKFSFFLESSIIFMAELGETELATDDDLLSTRELELASSEGFKCVRNVLFDKSDGVEDLVYLDSCDFTSGLTEGTSHTSLKSISTGAGKHFVNTDNVPRVDSTSQMETFFTTLLDQVLVGSDTASFHGLGTDLFLFQRDQMDSEGEFFDFSLLSTSIVDSDS
Ga0074024_1304481	Ga0074024_13044811	F044225	KASDLKDQAHKHAKDYVKDQRSYATQASDYIHDKVDEVIDGVKSKVGLAGEAVRHKKEELTEEARHAASVAAENAKHAAKEAQYSDHTGTAKEKLNDAKRNIKQKAAEFADNHL
Ga0074024_1310814	Ga0074024_13108141	F085035	YSLIDPGIPSSIYAYTYHQINRSDVRGKPTWAEAWEEMVKWVGRFASQTPEDDLCVFVMPHFAKMEKITLAYELSRANLEAPKNWVFVNATNILEKNLPFLDKIQLDHIYSHLYGVAPQRLHRADADTKTVKECLAKVFPDPERFKDAILLEMSHEVSKFL
Ga0074024_1315757	Ga0074024_13157571	F054554	QGRRLLRLSITFNQSSKMLGKLKKGMGDVKASADINAEYLMANNKNNFDHPAENGVKIKAYEDSYQAAHDFLDRIKSWTDKYQDLINSELKMVEKMNASAQLAAISVVFTTFTAAEQNVVQLRQQQLGKIIEYIQTPAKKYIQDQTPIKQKIDQTNKAWIELRYWRKKGGSHTADEKEAQIAYEAHIEQLFRMFDNNIDAQIAQWVKYFADFQIEFYSAAGGVAPRI
Ga0074024_1329593	Ga0074024_13295931	F012427	DFVIPCYARWIDISGDKLILTGGEKDYIESLNSTYMFRFRKYDGTDEGFSAKVYHKADMLFRRRAHSLIYFNDFIYAISGVDKLEMIKKCEKYDIHNDKWLEVAELNYPRQNAALAIHNQRYLYAFCGYDGFRNVDTFERLDFSDESKGWEMFDLKSSEKDCDVVDIRKNRMGIITLDFDRMLIFGGERNNKEYKDAYIYEFYENKFYQFADLVRTSNFIMSPVYYNGKYILFDFLNNIHELNLETLQFEYHVFHKEGDNVNL
Ga0074024_1336798	Ga0074024_13367981	F010295	LQALSSEGVLSETKVVGLLGGSEGSEFVLMGSKGSSESSGLSVTKVGGVVFALDTFSDLFSISLVDDGQVLSNGLSDNLNFSELGGGGATSDLEGSKTVKFLLVLFESLDEFVVSGGSKFENSELLVGHLM
Ga0074024_1348914	Ga0074024_13489142	F060491	LEYTESRSFREFFKDKIQLAVGAAKSVDFMKNVIKLRVMNCLTLRRNAEDIGHDGFFMKILASLTIRAVASLMILLARLSLIFDVSQDLGFKFMSSMSKAALVSKLALAFQFPVLTHFCLVFSLIILNEKTSFLSSIEVLLLRLNINLKGRAVNSIIHRVDATS
Ga0074024_1349386	Ga0074024_13493861	F102248	TYTTMLNNISQSMDESFKKMQDLANSIKQDVERSLSTNFKSFDVLEHKALEDPEHTAYFMKVKTDDNGHVKLKTTQHTPGSKWETHVEEYDKGVPGSWKSEDITSEKQPDLTSENQPAITHEA
Ga0074024_1350437	Ga0074024_13504371	F006377	LCAYVSIYTTKLLEGSSRRTLGGTDTWLTVSSWLIGETEFSHISSNHIELDFDVSIFLTSVDTNNGSDHFGKDDSISEVSLDGVGLLTRSEVLLGLSELLDESLIFMLKTSVESSLDSGSEEFDELLVLEGSKIFKGETSVGIFLSGTLFSYF
Ga0074024_1352576	Ga0074024_13525761	F102248	TYTTMLNNISQSMDESFKKMQDLANSIKQDVERSLNTSFKDFDVLEHKALEDPEHTSYFMKVKTDDNGHVNLKTTQHTPGSNWETHVEEYDRGVPGSFKSQDLTSENQPAITHEA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300030747: Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 12 (Eukaryote Community Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences