3300029900: Cryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_U-A2b

Overview

Basic Information

• IMG/M Taxon OID: 3300029900
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133355 | Gp0289633 | Ga0247048
• Sample Name: Cryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_U-A2b
• Sequencing Status: Permanent Draft
• Sequencing Center: DMAC, Technical University of Denmark
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 216656245
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Cryconite Microbial Communities Around The Greenland Ice Sheet
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → cryoconite hole → cryoconite deposit
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Greenland: Tasiilaq
• Coordinates
  • Lat. (^o): 65.41
  • Long. (^o): -38.51
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009478	Metagenome / Metatranscriptome	317	Y
F032009	Metagenome / Metatranscriptome	181	Y
F045483	Metagenome	152	N
F083559	Metagenome	112	Y
F088794	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247048_1008253	Not Available	3833
Ga0247048_1032410	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1300
Ga0247048_1048229	Not Available	926
Ga0247048_1086432	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	568
Ga0247048_1094614	Not Available	526

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247048_1008253	Ga0247048_10082531	F083559	VTVTALLDQPKLSLIDLPTLPHTVREFGIEARKLGKAWEAAFNGPIQTWSAAGTGERTYGVTVRLSRMKDTLTRELYSTNILFYLAEKDMAGMHNIYDMAKTLPFTRIRGPRTPVPHCPPRPGRLWYDANPEGVIMEDVRLAPATLPDGRAGFFATGQGYRGKVMLPDGLFVHDVGVYGGYLDPEARPSQLELTHLFGGIEFGAEKTGGQEDLFLTELGENIWVKGIIGSVTEELHVESYKNSVRLPSPLPERTLIGARSMSETKLLPYFGTSDPASLRGYSLRGFIDGLPGAIGSEVWERVVRVGLGSNFIACPEEGGYLGLIHVVLERNEPAHPETLDPSYPKIEEQYEGWMVRLDFDADDRPLFKSCVRAITPNDVPHCYNGLGELFDTKRVA
Ga0247048_1032410	Ga0247048_10324102	F009478	VTPVAFPEADHEFYDRARQGLEAKGYTWLADVEDLTLSRIYPQNRTFMRLFVDAGRMIRANAYHLHPRGVVISLLQLVQLYPRHLRVIELCSEIGGQFVVTSNTHGVDRLEPPPEAKVERMPLQSKLLDVVTRHENRITEMLREHPERTPTSFETFEEVLASIARAHVVMARHRQKVGGLSRDELERLKGRPLTASEEAFLHEVQSREPG
Ga0247048_1048229	Ga0247048_10482292	F088794	DRTGNINPDRQGCRMNAVLFVRATGGIDLPLVCSPSQVAPLLGRSDHAIRDDCMAGVIPTLPRAGGSGAHHRIATARLLDQIGIPYQIGIPYEIVASETIAP
Ga0247048_1086432	Ga0247048_10864321	F032009	MKKKILIAFFFVVCTSYQCLSQTYVSLAPSVTNTAGTFAEKSNIAFELGKQWDVFSLGIDYGKTTLAPVTGRDTSNYLELRPNLNIFQEGKFTNTFTAGIGYIFNAKESLLTELTYGIEYSFSEKIHYNVFFGQYFYSGKTSASNVSFFGVSAAYYFSPNKGGSIF
Ga0247048_1094614	Ga0247048_10946141	F045483	PMATMRRLFSALSVLGLSLLVLTGCVVPGGYDVNTLHVQPEAGLVYPGSTGVHTNDYNGSPGNYVSKGAVAATGKSGTTTHTQLEVLAYFSKTLAADGWKQTQEEVRAITPEGLPAHWIAWDKPKLHLSYLVEVWTVGEATKYYTQFGSNE