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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029898 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133355 | Gp0289631 | Ga0247046 |
| Sample Name | Cryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_U-A1b |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DMAC, Technical University of Denmark |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 188451592 |
| Sequencing Scaffolds | 27 |
| Novel Protein Genes | 27 |
| Associated Families | 23 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| Not Available | 5 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 5 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 5 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Cryconite Microbial Communities Around The Greenland Ice Sheet |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → cryoconite hole → cryoconite deposit |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Greenland: Tasiilaq | |||||||
| Coordinates | Lat. (o) | 65.41 | Long. (o) | -38.51 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003908 | Metagenome / Metatranscriptome | 462 | Y |
| F006162 | Metagenome / Metatranscriptome | 380 | Y |
| F014178 | Metagenome / Metatranscriptome | 265 | Y |
| F014637 | Metagenome | 261 | Y |
| F020721 | Metagenome / Metatranscriptome | 222 | Y |
| F021141 | Metagenome | 220 | Y |
| F023181 | Metagenome / Metatranscriptome | 211 | Y |
| F023221 | Metagenome / Metatranscriptome | 211 | Y |
| F025512 | Metagenome / Metatranscriptome | 201 | Y |
| F037822 | Metagenome / Metatranscriptome | 167 | Y |
| F043461 | Metagenome | 156 | Y |
| F045483 | Metagenome | 152 | N |
| F056330 | Metagenome / Metatranscriptome | 137 | Y |
| F061998 | Metagenome / Metatranscriptome | 131 | Y |
| F069623 | Metagenome / Metatranscriptome | 123 | Y |
| F074174 | Metagenome / Metatranscriptome | 120 | Y |
| F079908 | Metagenome / Metatranscriptome | 115 | Y |
| F083019 | Metagenome | 113 | Y |
| F083559 | Metagenome | 112 | Y |
| F083833 | Metagenome | 112 | Y |
| F091561 | Metagenome / Metatranscriptome | 107 | Y |
| F092239 | Metagenome / Metatranscriptome | 107 | Y |
| F097562 | Metagenome / Metatranscriptome | 104 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0247046_1000498 | All Organisms → cellular organisms → Bacteria → Terrabacteria group | 16055 | Open in IMG/M |
| Ga0247046_1005237 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum | 4912 | Open in IMG/M |
| Ga0247046_1005388 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 4823 | Open in IMG/M |
| Ga0247046_1006137 | All Organisms → cellular organisms → Bacteria | 4428 | Open in IMG/M |
| Ga0247046_1007692 | Not Available | 3810 | Open in IMG/M |
| Ga0247046_1008921 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium | 3426 | Open in IMG/M |
| Ga0247046_1009213 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 3350 | Open in IMG/M |
| Ga0247046_1010745 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 2995 | Open in IMG/M |
| Ga0247046_1012848 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia | 2631 | Open in IMG/M |
| Ga0247046_1012977 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 2611 | Open in IMG/M |
| Ga0247046_1014416 | Not Available | 2411 | Open in IMG/M |
| Ga0247046_1015911 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 2237 | Open in IMG/M |
| Ga0247046_1022422 | Not Available | 1676 | Open in IMG/M |
| Ga0247046_1024704 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales | 1538 | Open in IMG/M |
| Ga0247046_1031611 | Not Available | 1228 | Open in IMG/M |
| Ga0247046_1032028 | Not Available | 1211 | Open in IMG/M |
| Ga0247046_1033125 | All Organisms → cellular organisms → Bacteria → Terrabacteria group | 1172 | Open in IMG/M |
| Ga0247046_1036155 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1074 | Open in IMG/M |
| Ga0247046_1037749 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1030 | Open in IMG/M |
| Ga0247046_1038423 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1013 | Open in IMG/M |
| Ga0247046_1039904 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 975 | Open in IMG/M |
| Ga0247046_1044429 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 876 | Open in IMG/M |
| Ga0247046_1051821 | All Organisms → cellular organisms → Bacteria | 752 | Open in IMG/M |
| Ga0247046_1052462 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 742 | Open in IMG/M |
| Ga0247046_1060499 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris | 648 | Open in IMG/M |
| Ga0247046_1062629 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 627 | Open in IMG/M |
| Ga0247046_1068929 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 574 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0247046_1000498 | Ga0247046_100049817 | F056330 | MPTDALLALQASVTKAATFNGAALILLTGTPRRGLKARVIYSAATSTTTNACTFSLDVSYDAGSTWNSDFYQPIALALTTTSISGEIFIPFEVSPTSVVNGIQIRLTATVSGGGVATITYQGDITLARP |
| Ga0247046_1005237 | Ga0247046_10052374 | F003908 | VKVTTSFAAAVLALGACSSPAKQPMTLEQMIAADPLPLAKGAKWTYNVTVKRYDPDSDKESTKTLTWTTEVLDAHEVNGVTAFRVKGWPTDLASDLESAAPVATERTLLRSGNNFLFGATTEPTLDGAEGWFTWPVIDGQKICPKTETVYCWQVTAVDTGYALSFYTGPDEQTFDIEPGTGVSRFHYAHHGTTNEVEAKLTSFTKGR |
| Ga0247046_1005388 | Ga0247046_10053886 | F061998 | MTALEKGVTAFLAGLIAVALATTLVGPGKQTPAVINSAGGAVSGSLLAAQGSH |
| Ga0247046_1006137 | Ga0247046_10061371 | F083559 | SRMKDPVSRELYSTNILFYLPAGEMHGMHNVYDMAQRFPFTRIRGPRTSVPHCPQREGRLWYDANPEGVIMEDLRLTPAALPDGRPGFFVTGQGYRGKVMMPDGRFVHDVGVYGGYLDTEERPGQLELQHLFGGIEFGATFTDDDAGRMLAELGEGIWVKGITGNGAEGTHVESYKNSVKLPCLDGRKTLIGARSMSETKQIAYFESQSADGLSGFRMGGVIDGLNRALGLEIWDRVHRVGLGSNFVPCPELDGYIGLIHVVLEKNNPDYPETLDAVHPGINEQYEGWVVWLKFDADGRPVIEACVRAITPDDVPAGYEGAGELFDTKRVAFPMSLYRIGECLSVGYGWGDRALFQADFDYATVTAQLSSHGRS |
| Ga0247046_1007692 | Ga0247046_10076922 | F074174 | VIDLSERTRRISGSRLLEILQTYDAKSVIDPFMGYPAHLNFLKRHGIAVHGGDLVDWFVRAGEGLIVNDLTILRDSEVAEIVEMLPGRIYPIDLFKGWDGVFFTEEQCIYLGVWHSNVHNLRSDGQTGLAIAGLWHVLCYWLQKSKYPDDMADLPPSELAWNYIRETEHLVTQNAQRNTVRRGDFNATLGSIQADAVFIAPPGRNAHKKADARVWMWEAWWQGDPYLNIEGYYRDTVFVQRTNEDSSYDRALGTVFAAAESSPLLVLQTTLQNAAHFKTVMGEFRPHVEIISPHADETYVVGRR |
| Ga0247046_1008921 | Ga0247046_10089213 | F045483 | VTETWRQSTPTAKPRRLVSGLSVLGFSLLVLTGCAVPGGYDVNSLHLQPEAALVYPGSTDVHTNYYNGSPGNYVSKGAVASIGNLATTIHTQLEVLAFFSQTLAADGWTQNGKSDQETTPEGLPASTISWGKQSLHLSYSVEAWREGETTKYWTRISSDE |
| Ga0247046_1009213 | Ga0247046_10092132 | F083559 | MSLLDKVYPAMNNAVQHQEVFEERLESNGSRGMDIIPHTVREFGVEARKPGKAWEAAFNGPIQSWADAEAGQTLYGVTVRLSRLKDPVSRELYSTNLLFYMPEEAMHGMHNVYEMAHRFPFTRIRGPRTPIPLCPARVGRLWYDANPEGVIMEDLRLTPAALPDGRPGFYVTGQGYRGKVMFPDGRFVHDVGVYGGYLDTQERPGQLELQHLFGGIEFGATLTDDDEGRLLAELGEGVWVKGITGNAAEDMHVESYKNSVKLPCLDGRKTLIGARSMSDTKQIAYFESLSVDGLSGFRMGGVIDGLNHALGLQIWDRVHRVGLGSNFVPCPELDGYIGLIHVVLEKNNPDFPETLDAVHPGINEQYEGWVVWLMFDADGKPIIKACVRAITPDDVPAGYEGAGELFDTKRVAFPMSLYRIGECLSVGYGWGDRALFQADFDYQTVMALLSSHRRN |
| Ga0247046_1010745 | Ga0247046_10107451 | F097562 | VNRDAKSQSSLIALARTRRMQRALAHAYLHQNAPLPTLRLSLGFMMQTACTTEDVAGLGHRMSVLGVHEHEGCAYVLEELSPSDAPIVYRLFLAGARMGHLVPIHAWYEHDPSAAQIRARVHELELVRCTKTTTEAWMLSTRVVQRRALRVA |
| Ga0247046_1012848 | Ga0247046_10128483 | F069623 | MKTTMEMNTKQSVFALQHIDSGEYICLLQEGVDYLACFSDGDSALEFRSLLGLHEHVDLCSTTMDRSPFSHFWLDGESVNLLHVPELAN |
| Ga0247046_1012977 | Ga0247046_10129775 | F023181 | WLADVEDLTLSRIYPQNRTFMRLFVDAGRMIRANAYHLHPRGVVISLLQLVQLYPRHLRVIELCSEIGGQFVVTSNTHGVDRLEPPPEAKVERMPLQSKLLDVVTRHENRITEMLREHPERTPTSFETFEEVLASIARAHVVMARHRQKVGGLSRDELERLKGRPLTASEEAFLHEVQSREPG |
| Ga0247046_1014416 | Ga0247046_10144164 | F074174 | ISGSRLLEILQSYDAKSVIDPFMGYPAHLNFLKRHGIAVHGGDLVDWFVRAGEGLVVNDLTILRDSEVAEIVEMLPGRIYPMDLFKGWDGVFFTEEQCIYLGVWHSNVHNLRSDGQTGLAIAGLWHVLCYWLQKSKYPDDMADLPPSELAWNYIRETEHLVTQNAQRNTVRRGDFNATLGSIQADAVFIAPPGRNAHKKADARVWMWEAWWQGDPYLNIERYYRDTIFVQRTNEDSSYDRALGAVFAAAESSPLLVLQTTLQNAAHFKTVMGEFRPHVEIISPHADETYVVGHR |
| Ga0247046_1015911 | Ga0247046_10159112 | F083833 | ETAAYLVGALRGDAEVGKAVSDVLASRKAKVLTALLKGLETDDETHAQRILQLIGALPDACEILCDAIESPAENVQVNAAVGIGLLGTKKAGSDGRKALETRRTGGFLRTREAAFKGLALLKELP |
| Ga0247046_1022422 | Ga0247046_10224223 | F006162 | VTDATVIELVASFAFPDVAAAGRSAWVLPSIAITIGPLLLLLLLLLDHLVHIPRFRPAGRALTIGPCILVATMSGNALAAVTGITAGVLLLVTATAGFHELAGIWRDQRTR |
| Ga0247046_1024704 | Ga0247046_10247041 | F043461 | PTATVVNLGASAIEMKRGGATGRELPRGEQLWKGQCTLVAGATIPYFGFGLKMFAFAATRQHAFHLRCGDAGLFEIMRNAPAAFRGDYFSDQVSDFMCDRVEISLDREAAIEAGGELLGRRSKVELALGTPITIVSLAP |
| Ga0247046_1031611 | Ga0247046_10316111 | F025512 | LTLDRTVRLLQRAMDVPGLSLKLALLLVEYHIRRNQTARRSHTKTWMARHKKVKLLPL |
| Ga0247046_1032028 | Ga0247046_10320281 | F083559 | SEPSYDDFHVMEVIPHTIHEFGVEARKAGKSWEAAFNGPIQSFEELATGQSAYAVTVRLSRLKDPVTRELFSTNLLFYMSHEEMSGMHNVYDMARKFPFTRIRGPRTLVPHCPPRDGRLWYDANPEGVIMEDLRLTPTTLPSGRLGFFVTGQGYRGKVTSPDGRFTHDVGVYGGYLDPLERPGQLELQHLFGGIEFAPYRAGGEENPLLTELGEDVWVKGIGENTLGLPSVSSYKNSVRLPSQDASQILIGARSMSETKQIAWFESRSADGLSGFRLGGVIDGLHRALGLQVWDRVHRVGLGSNFVDCPELGGFIGLIHIVMEKNNPAFPETLDPIHPGITEQYEGWLVWMTFDEKGVPMIKACVRAITPDDVPLGYCGAGELFDTKRVAFPMSLYRRGNALQ |
| Ga0247046_1033125 | Ga0247046_10331251 | F091561 | SLPAVHRAILLWLFQDLVLWLIATDQIQAFRPCRI |
| Ga0247046_1036155 | Ga0247046_10361552 | F014637 | ALAEPVTRAWWAPARVRALAELRVAIADALEGHGEKALDRVRHARAKLSPRLIQHQFSHYTEINLLTALGRTKEARAILEARGGVPQGEVLKLSYWIAEMHLWVAEPPARLDLDDGELHDRMRKGLSMTAGADLLLLCSWAYAFKGEHDEARFAWRQSKEREGSQRLEISMPKLAAWMEQYRARYPEVDEPEPDPIDEL |
| Ga0247046_1037749 | Ga0247046_10377491 | F092239 | MRRLAFAALAIMLASQTGCPDDPYKAKTWTKKLTDPREAERAVTQLEQLGDPSAIPSLGDAWVAQGKPVRLLQVIISLARPLTPEQAKNSFVTDYESTGRPASWTAALPYLQKALTEVDEANPRSVDSAQKAADALGEARVDGGLDGLIDIASKPVTKKLVSAEVSAIRAIGKYDGEKAKAAGALQKIIDRDPPDHPRTAKDKEQGRALEEKYGLFLGVTGASINALADL |
| Ga0247046_1038423 | Ga0247046_10384231 | F079908 | MAPLRREALLPNERGRGLGTVAVVCTMAGVASGLALATTLMAMQVADSMSVRNCPYRIVQDTQPIDVRADHGFLGVHYKFHDNGADILGVLPGTPAQSVDLH |
| Ga0247046_1039904 | Ga0247046_10399041 | F020721 | VAPALHLSVPMPTNDFETITHGLVHAHGGVSMKLTQYGYPHDPYSDSETRKGHGAYHALSAESSIAMTDSGLRALGLSRSQVRSTSQFVDIKLKGGGVMTRRIDDRAPEKDMRTDLYQPHGFDR |
| Ga0247046_1044429 | Ga0247046_10444292 | F037822 | VGGQAAEQIIAGVVLSERLAVTMYGAIHRAQFNGQRNLRGLVVDPKILAEETFRDTLTDATLLESVTALEHQNIVPTFTVESGGSDVVVVTRGSG |
| Ga0247046_1051821 | Ga0247046_10518212 | F023221 | LLEAALEEPGLKLPRAVALVEYHIRRNRVAKASHDKTWKEKHEGVIFVRL |
| Ga0247046_1052462 | Ga0247046_10524621 | F091561 | AFPPSGPRPSLPAAHRAILLWLFQDLVLWLIATDQIQAFRPRRI |
| Ga0247046_1060499 | Ga0247046_10604991 | F014178 | RGASPTSPTMKDEIYIGGWTLPRLREKSQTERYEVWRRARALHSAEGNHLARAIERLGLPYAEPEALDGEHPLLDRLSEIVASKEARSAAIEATLDGLPAMAGVDVLLHEKLGEDYRLNPAAVPTAQGLVAELMESLGWERSGKKTLPLRCVAREGVFWKRG |
| Ga0247046_1062629 | Ga0247046_10626292 | F021141 | PLRVRWLATDGVPGDGYKAQVTAIQLPEGVSLVMDASSILEQSHADVSGGLGAYVVTFQGMVGYAHDHPDRAHVDGFEDQEIDYVLEFIHEESGRVAIDNEDYKIVERPRGWAHKLNKRAASQPAPGS |
| Ga0247046_1068929 | Ga0247046_10689291 | F083019 | VQNLHEPAKKGVRDELVLDTNVSDVKLTVRLDGGTVSSIVAIVQGHGARDLLTRAWGPPQIAHDSLGQPEVTWASESTGWKVKLDCLERNCLVEYTPYHVLTSEFFGSHVIPPGDLAKLRVGMKLADARALAPGIIASRTGIPTSVDGVREFVAIDDKAGVVRSIYLNLPPHAEDLVAEAWSEGWKASQLG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |