3300029862: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37353

Overview

Basic Information

• IMG/M Taxon OID: 3300029862
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283942 | Ga0245308
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37353
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 216989928
• Sequencing Scaffolds: 9
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → Eubacterium ramulus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. ATCC BAA-442	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F047126	Metagenome	150	N
F051936	Metagenome	143	N
F059106	Metagenome	134	N
F062845	Metagenome	130	N
F067720	Metagenome	125	Y
F067844	Metagenome	125	N
F074964	Metagenome	119	N
F090484	Metagenome	108	N
F099269	Metagenome	103	N
F099406	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245308_100107	Not Available	143601
Ga0245308_103146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → Eubacterium ramulus	12398
Ga0245308_104309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens	8947
Ga0245308_104660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8200
Ga0245308_106835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	5209
Ga0245308_112415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2429
Ga0245308_123234	Not Available	1165
Ga0245308_123394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. ATCC BAA-442	1157
Ga0245308_124628	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	1095

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245308_100107	Ga0245308_10010720	F099406	MAEVGYNSKFEGLEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSTYLDLSMFLGNSGTLDEISFGKVLDAYNNKITLGKLGNNYYSLDYFLDGRDFEGNFELRIILVSFADTNSAEGTSESDIEIQVGTFVVTQDKAYKVMNNMVTLSNTILSYLKFMATTPKVVTTLANLPKGAHNIIANVSSATNLSMDVSSDDVGREWKVRVNNTTGTDITQPLPTSGQFQSMSGDSVVVPKNSFIELSIWYINDKLVIRVGEQA
Ga0245308_100107	Ga0245308_10010739	F090484	MIKNINRLSLFASQICNGVLGFSERKRHESDGYPQKSIRFFLSKIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVSLPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIKDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVNKKDDFNFFLKDNTHILRFLNAEEVVSGDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGLADAEACCAEVGTSVAGVCGRVSRRMKSYNNIAPDKKAGFNEVRDMYAEFAGEMTKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNINTTVDNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL
Ga0245308_100107	Ga0245308_10010765	F074964	MITKKNVNKLQNAVIKESASSLAGAVRLYSALFASGANMKAVCKTLDIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSIYSKVYKDNKVDKEKGIEAKTADWCAENVIYGGEYKSFGFSTAETLETKKSAKWLVKETDEYKATYVAVKIKSYSIRTIAKCVSEYLTHESDQQ
Ga0245308_103146	Ga0245308_1031461	F067844	MNTLAAETASAWYLILNRKLQTLPFYKAQLSSPLPRPLTMGTQQVSAGAAVITPQHRS
Ga0245308_104309	Ga0245308_10430911	F099269	VHGVLVSVQVGELLLLDDLGDRAGGASVLASATGDAGILVSDGGDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV
Ga0245308_104660	Ga0245308_1046601	F059106	WKIQVILLQIFVWIVDLKVREHLTEYLKKDIKYHRVIIGAFV
Ga0245308_106835	Ga0245308_1068353	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAVVPNPPPPFAQRFIARFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0245308_112415	Ga0245308_1124153	F062845	MEKTPFILHGKFRSDNNEQRKEQFQKRFEQYIVDALSNTVPSKSCA
Ga0245308_123234	Ga0245308_1232344	F067720	MASTTYRHLGDVTEMFAAQEQFRDITKMVCARLRGLTKTYHLSNVNKLVTFCHRFAVLGSMVRNSGQLPQPFWLGAARGGGSCSLSASVARA
Ga0245308_123394	Ga0245308_1233942	F032286	MVKWVCQTVTSVRHRALVFNTWLFAGNTADDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISLFSLALIFIFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRRGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKIADFHAYGQDRKRAEI
Ga0245308_124628	Ga0245308_1246281	F051936	ALRGKAFGFSVLQEHAVMTPVISIFFLMLIIRYLSIHISIKK