3300029852: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37208R1

Overview

Basic Information

• IMG/M Taxon OID: 3300029852
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283926 | Ga0245291
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37208R1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 218317042
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola massiliensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F029444	Metagenome	188	Y
F039147	Metagenome	164	N
F054110	Metagenome	140	N
F057385	Metagenome	136	N
F067720	Metagenome	125	Y
F082887	Metagenome / Metatranscriptome	113	Y
F087213	Metagenome	110	N
F088921	Metagenome	109	N
F092228	Metagenome	107	N
F099269	Metagenome	103	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245291_100020	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola massiliensis	281159
Ga0245291_100039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	205270
Ga0245291_100075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	157488
Ga0245291_100101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	136152
Ga0245291_100155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	105444
Ga0245291_101271	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	24560
Ga0245291_101825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	17696
Ga0245291_103922	All Organisms → cellular organisms → Bacteria → Terrabacteria group	8035
Ga0245291_119329	All Organisms → cellular organisms → Bacteria	1749
Ga0245291_122852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1487
Ga0245291_130102	Not Available	1133
Ga0245291_134926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	967
Ga0245291_164064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245291_100020	Ga0245291_100020154	F099451	MEIKNVGQLRKIIENLSDDCEIEMRVRRKLTDEELKNCRYPYPYDTEYLILEFDDIGVSDKVLCLGVTSNE
Ga0245291_100039	Ga0245291_100039165	F039147	MRARRLLILLMMLLLLPQAQAERLTLYTRPGQVDEATPFQLRPTELSICSVTRAMGGVVVLANDDNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYAMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMANLSCLNISYRDLETDKVYTYPASLTRMHVCGSVLAISVMQENAIKVVLVDLTDGAIREIADESLEAMYEWADGELLLWRLEGSPNEISRSSGTYALSRYSVATGEETMLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEDPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPEVILAQETLAKSAMNAASLAARMSASADAPDILRLGLTPDTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRNGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTMNADLVGKMLAQVIADQEATAKCVLLADYDEPIEDSYYLIMVNDYEKTLTELRRQQENAPVWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFSALVSQVHQGEISLEEFVEKADKLIEGLEQ
Ga0245291_100075	Ga0245291_10007594	F087213	MKHSIARFSCFALIFVLLLALCCAATAESIDAVSGAPLDNDIEIVYKEHFDDMVTHYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADTALDARLQAILAACGLNPEDYDISVIRNLSGMPEPITGTNWYCTLIRKGVEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV
Ga0245291_100101	Ga0245291_10010123	F092228	MKKKCTLVLISVLTVACVVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVKLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPAKIAGKCDCDELLATKNFLYCYTINYILPRGLANSWVKGYLIDQLAIS
Ga0245291_100155	Ga0245291_1001554	F057385	MKKLLAVLLSIMMLAMPLTSMAENSVWDNAARQETTITIHDLNADLVAALGGDDTAMAAINDLLAALSLTGYQQGDEAGFDLNLSGKSVLGMASLTTAAEENQLMYVSSALLGGVIAVNSKDVEAIKEKALRATMKMSGQSDEEIDKAIEESKEQLSGNAEYTALMEAAANLSSMTEEQLMEELTQADTTAFMTMMNEILSGEEMAEVTEQPGDCDAAKSYVKVTVPPEKIVEMTKALLEMIHSVPSVGAYMDALFSAADTSWDDLQKELDEADLYADDIVYEYWMTEAGELVRMTASVKINNGGEEPLPISFTMTRNTADGVATWLVTIKSAEDTAATLTFAGDLENFTANLTAYAGEDSVEINVSGKGVGTDSSVVDVEIKETVDGVEQGFGVVVTTATTMDGEQGVRKVDVLVRFMGLDVVTITAETRTCDAKDALDVSKAQDLGAMTDSEFQTWFVKVMNNLQNLPMTLLMSLPESMLTLLMGGSN
Ga0245291_101271	Ga0245291_10127112	F099451	MAIDKIKTVGQLRKVIEDLSDDYEIEMRVRRKLSDEELKHCRYPYPYETQYSELEFDDIGVSDKVLCLGVELKDE
Ga0245291_101825	Ga0245291_1018253	F029444	MEVSEQLTGFEPEDLMSWTVSNLQRPFREDFSLQKSGIIAEKESQIFGRRFVGFDRPKKAAPFFNF
Ga0245291_103922	Ga0245291_1039228	F082887	MEKLKTIAKYLTNILAIVSALVAGINAVDGITIPYAIQIVQVIAVVQGVIGTYLLGQKAINSKEE
Ga0245291_119329	Ga0245291_1193294	F013656	KSETETTINVLYSENMLSIYTNKVNLQKKLNKLLGAPTKEDKIKRSIAGSRWNISLDDKTKIQKIILKANIYEL
Ga0245291_122852	Ga0245291_1228521	F088921	LGATIRLYKIGAGKNHFLCSEKSKSTVFDLDSETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSA
Ga0245291_130102	Ga0245291_1301023	F067720	MASTTYLHLGDVTEMFAAQEQFRHVTKMVCARFRGLTKTYHFAVIGNMVRNAGQLPQPFWLGAACGGGSRSAARCAART
Ga0245291_134926	Ga0245291_1349263	F054110	LKALQMNGRRYVVDVRQTWSKYDKPCKIYIVSRMYTEEEYKLTFPHKYKKGKTFKEKQLYKKESEYSSTKQHEVLLFLVKAYKGGD
Ga0245291_164064	Ga0245291_1640642	F099269	LSVQVGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSF