Sample 3300029838

Basic Information
IMG/M Taxon OID	3300029838 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116197 \| Gp0321335 \| Ga0307348
Sample Name	Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Met1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Met1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	42987975
Sequencing Scaffolds	18
Novel Protein Genes	21
Associated Families	16

Dataset Contents

Total Genome Size

42987975

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	5
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon	2
Not Available	7
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Archaea → Euryarchaeota

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon

Not Available

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon

Ecosystem Assignment (GOLD)
Name	Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
Type	Engineered
Taxonomy	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Ecosystem Assignment (GOLD)

Name

Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Type

Engineered

Taxonomy

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Wisconsin
Coordinates	Lat. (^o)	44.11	Long. (^o)	-88.23	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

USA: Wisconsin

Coordinates

Lat. (^o)

44.11

Long. (^o)

-88.23

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F012026	Metagenome / Metatranscriptome	284	Y
F015738	Metagenome / Metatranscriptome	252	Y
F022205	Metatranscriptome	215	Y
F025291	Metagenome / Metatranscriptome	202	N
F029922	Metagenome / Metatranscriptome	187	Y
F030486	Metagenome / Metatranscriptome	185	Y
F035532	Metagenome / Metatranscriptome	172	N
F037746	Metagenome / Metatranscriptome	167	N
F053881	Metagenome / Metatranscriptome	140	N
F054063	Metagenome / Metatranscriptome	140	N
F059033	Metagenome / Metatranscriptome	134	N
F070633	Metagenome / Metatranscriptome	123	N
F082734	Metagenome / Metatranscriptome	113	N
F094051	Metagenome / Metatranscriptome	106	N
F095527	Metagenome / Metatranscriptome	105	N
F098758	Metagenome / Metatranscriptome	103	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0307348_104014	All Organisms → cellular organisms → Bacteria	1581	Open in IMG/M
Ga0307348_105024	All Organisms → cellular organisms → Archaea → Euryarchaeota	1407	Open in IMG/M
Ga0307348_105078	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon	1399	Open in IMG/M
Ga0307348_105160	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon	1387	Open in IMG/M
Ga0307348_105329	Not Available	1364	Open in IMG/M
Ga0307348_107775	All Organisms → Viruses → Predicted Viral	1108	Open in IMG/M
Ga0307348_109318	All Organisms → cellular organisms → Archaea → Euryarchaeota	993	Open in IMG/M
Ga0307348_110202	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	938	Open in IMG/M
Ga0307348_113854	Not Available	775	Open in IMG/M
Ga0307348_114257	Not Available	761	Open in IMG/M
Ga0307348_116591	All Organisms → cellular organisms → Archaea → Euryarchaeota	691	Open in IMG/M
Ga0307348_117021	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	680	Open in IMG/M
Ga0307348_118145	Not Available	653	Open in IMG/M
Ga0307348_120197	All Organisms → cellular organisms → Archaea → Euryarchaeota	611	Open in IMG/M
Ga0307348_120628	Not Available	602	Open in IMG/M
Ga0307348_121175	All Organisms → cellular organisms → Archaea → Euryarchaeota	593	Open in IMG/M
Ga0307348_122519	Not Available	569	Open in IMG/M
Ga0307348_127162	Not Available	507	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307348_101535	Ga0307348_1015351	F035532	NIERIFAAYNGLTVVKTWSRPTKLTTAVESPEVNIDLIAASVDSVSLSQPHKKTSFYVRFTIFEEQTTSTSQMDTIYQGIIGAVAANPTLKDSNNAATCDYFGTFNGREISWDLAATERNGISVNAMKIDVPCEVRDT
Ga0307348_101823	Ga0307348_1018232	F035532	MTFGPIAFLANIERIFAAYNGLTVVKTWSRPTKLTTSVASPEINIDYVVASVDSVSLSQPHKKISFYVRFTIFEEQTTSSSQMDTLYQGILGAVAANPTLEDINKVATCDYFGTFNGREISWDFVATERNGISVNAMKIDVPCEVRDT
Ga0307348_104014	Ga0307348_1040141	F030486	RYVALAQSRGGACFCTRGAMQGYAVITLLSRWQKP
Ga0307348_105024	Ga0307348_1050241	F054063	IMNAWLYGVESTSNLFFERPKLFYRKWGTLAIHPFIESWGELGMEFQKGLSPYNTVKMFIDALVAAHFFNPDDFEFGGDDNNFTFKAIKCPYKSHCKKLVDSKNEIACLRAITLLGSLDYNVEGESLKYKYNFDFNENAPCNVVFERFKD
Ga0307348_105078	Ga0307348_1050782	F037746	MLKKLSPWARWRKKMTIDIEKAKAEDIVGQEFDANYIAGTTDKDMEEARAVMSKLLKKYGSRQALEADQIDWEKYQKAMYVVASRSKDAMIAATKAREDHIKRKNLLSEFFEENPKVLFGLSEWQRINIRKYTDFGLLVGQELLWDLLKEEGEEGTIAHLANVANYIYNDTGFMGGVREDYSALLKGPIRSIYYRPSCKTHETVKPDCGCECED
Ga0307348_105160	Ga0307348_1051601	F053881	LGEKERKLYSKLYRHIIESFEIDEIAADQISLALVCQRCILLPRLLSGEDVDINQVSESIREWLSEYRLTPKSREKEKEVTINLSAIIEEIHRERENPN
Ga0307348_105160	Ga0307348_1051602	F070633	LGGRDTGLRDRAKNRLVLDVSHSQGDEGFIYSVRQHLPLGPKKCTGGFNLVVVPLSDGILTSIDRDNFNVAVDTEGRLILTRLDRKIQLVFDYDKGFMTGVLGGVLYDTFEIPKHEGTDYHG
Ga0307348_105329	Ga0307348_1053292	F082734	SHRHLFGGQTITWQAFDEEEAKKRGISYSYWKDIHYSQETAEKVPFFVLSDDGIVVPIYSISFIRSGIVLRSAFGEFHLPNSGSRYYHDRAKMLVLTENRSQTEDYINYKSTPGALLRGAVVRMAANGLDVGEIVKILCVSPKSQRATKIKQFYKSEECTRMVREEVRKILENCGVTEEAVVKMLLEAREVALEKKDAANMLRAAENFVDMYGMKEKDRQIDTRTFEVESEVEDLKKLEKVSDRLKLTQKEEKDAQTN
Ga0307348_107775	Ga0307348_1077752	F012026	MNLKEVQAQTAALIGKRAEAINILHRLEKVEDRYNPKIIAEINGYKQAIEELSKELNRLEVEKGALLEAEEAARKEYITALAAYDELYGRFPNAEKEAGELLKRYAKHVEAARRAREILMTKMTALAAVSGAYLPIPPQIGHAWREYAREYAFEIEHRGGD
Ga0307348_109318	Ga0307348_1093182	F095527	GILSEDYNTATTSAISYLEGIDPENPYLLLAKDTTITNPKMSINFALKGIIESEKGNKEDNLNKALEIMNSLKLIPEERKDMFNVLILEYNLTRSQKYIEDSAKTSNLRYLANSEEYLKQANEDLNEINGNGLEETETKLKKIAETYLNQSSNYSNLYKEMALMSYGENRYLATTLFSIYAKNDKQSFDEPLDVILTRFGNVWNSFFGSGTYKDSPFSPDSLKELQRKAINYRGEGNEDFANVISDYIKFQAISYTEFINAIEEGGL
Ga0307348_110202	Ga0307348_1102021	F094051	MANTGVLGKVQIEGNWTQKRLILPVIQAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHRPTALVMGTLAGAYYVDAVGDKVAIANLTEWRGAVSIHPTLNIPVFISTDVDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVYQYDIWRSPFSNIQQTSGNLNLGVMR
Ga0307348_113854	Ga0307348_1138541	F025291	NKQPNQRRGGYRPSTKTKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK
Ga0307348_114257	Ga0307348_1142571	F025291	NGKNKHYMVNLNRQINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLITDEFQNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKSLTAQSCEWDLKGLGPNFNVWLDTGATIPGQFQIGNYIFGSIPINLGWEVKFQLVVEFTNPK
Ga0307348_116591	Ga0307348_1165911	F054063	FSKVNLMDINVKLKYTSTIMNAWLYGVENTANIFFDKPKLFYRRWGTIAIGPFIESWKDLDMEFQKGLSPYNTAKMFIEALVKAEFFNSADFEMAGDDNNFTFKAINCPYKSHCSRLIDEGKEIACLRAITFLGAMEFNKEGESLKYMYKFEFNKETPCLVSFEKFKD
Ga0307348_117021	Ga0307348_1170212	F015738	MPEIERPPVLLWAGLDRDLSPEIEAAICEVFPGDPERVHLATVRVMEVVLSRVPPSGLEGCAWCLHFDRPIDHRLVKEDRPACIEERNGCGNCPESTYRVRRGPDR
Ga0307348_118145	Ga0307348_1181451	F059033	MAITTANLQALAAAWGVGNEYQPIVVDLLKRSSLLQTATVAKASHGIKHKFRYFNSLPTAAFREIGEGIVPQKVDVNTAQIDLKELVFDLFDDYQAILQYPGGKEGWLKDNYTAALAALTNALAKAVFYGNIPSFGYEKAFKGFHQYAKDLGQVIAQKGAPTAYRSSIFAVRWDEFDGASLRFNNTELLQVIDMTPNQPIPIVTDT
Ga0307348_120197	Ga0307348_1201971	F098758	TAIFTVITLIWILILSSGCNKPNEEKPPVINKDLCDNIECPNVCKGEDLWSQKCLDGNCVDFVRVESCSEKCGCIVDLCQRIKCSDQCRNEDLWTYKCVDGLCTPDTIKEKCSIQCGCAPKFFYKLNPQARYRLREVGIIANVYSIRSDQVIRAVVTCRTSLCTDPPTVYYTEFDDPFERSEDETVEYFGTIWKNFEPMKGYE
Ga0307348_120628	Ga0307348_1206281	F022205	NLRTMRNRNKRFLLPYNKFHNATDQTSSITTNVFGFPLSRPLRPHAVEVRYAHSAPIGVRFRIYAGNGEEVYVSPALVAGPAPQVFKASLPANTDFAMYGPSQIVMDFAGTATWAIRLIMAHKENTA
Ga0307348_121175	Ga0307348_1211751	F098758	CNKPNEEKPPVINKDLCDNIECPNVCKGEDLWSQKCLEGNCVDFVRIESCSEKCGCIVDLCQRVKCNDQCRNEDLWTYKCVDGLCIPDTIKEKCSVQCGCAPKFFYKLNPQARYRLREVGIIANVYSIRSDQVIRAVVTCRTSLCTDPPTVYYTEFDDPFERSEDETVEYFGTIWKNFEPMKGYELKIDKSGTYMIG
Ga0307348_122519	Ga0307348_1225191	F029922	LAKSVDVFEKRHMDVLPMLSREELYSLHIFDLSEMIISIEHAIRYTEGYRFLLLCFGNEGSSDKAKTIMKGLEDYLQIVKDVYRFKVNEKKRKENFFMGEIC
Ga0307348_127162	Ga0307348_1271621	F029922	MDVLPMLSREELYSLHIFDLSEMIISIEHAIRYTEGYRFLLLCFGSDGSSDKAKAVIKGMEDYLGLVKDVYRFKVNEKKRKMAFLKGDIY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029838: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Met1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences