NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029826

3300029826: Marine sediment microbial communities from Jimmy Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - N0247



Overview

Basic Information
IMG/M Taxon OID3300029826 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0121308 | Gp0151791 | Ga0134619
Sample NameMarine sediment microbial communities from Jimmy Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - N0247
Sequencing StatusPermanent Draft
Sequencing CenterBattelle Memorial Institute
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size299701242
Sequencing Scaffolds16
Novel Protein Genes17
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Sediment Microbial Communities From New Orleans, Usa To Study Impact Of Deep Water Horizon Explosion
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From New Orleans, Usa To Study Impact Of Deep Water Horizon Explosion

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine benthic biomemarine benthic featuremarine sediment
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Bay Jimmy
CoordinatesLat. (o)29.44Long. (o)-89.903Alt. (m)N/ADepth (m).02 to .04
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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