3300029790: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 015_6_4_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029790
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133095 | Gp0281941 | Ga0242825
• Sample Name: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 015_6_4_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 263753077
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F071325	Metagenome	122	N
F076190	Metagenome	118	Y
F078004	Metagenome	117	N
F078822	Metagenome	116	N
F089005	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0242825_1000190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	133067
Ga0242825_1001326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	30373
Ga0242825_1001691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae	23891
Ga0242825_1001710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	23593
Ga0242825_1002112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	19289
Ga0242825_1003136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	12452
Ga0242825_1009047	Not Available	3560
Ga0242825_1020483	Not Available	1469

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0242825_1000190	Ga0242825_10001901	F056309	RSTVKGTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKDREAVSPLIN
Ga0242825_1001326	Ga0242825_10013261	F056309	GTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0242825_1001691	Ga0242825_10016911	F059106	HAIVWKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHQVIIEVLV
Ga0242825_1001710	Ga0242825_10017103	F042936	VWKTKEGIMKTSGIVDRGEDTIRNCEKVEQEGALTPPYLGKVHFRSRLRGKG
Ga0242825_1002112	Ga0242825_10021121	F071325	FHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFSKAFRPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0242825_1003136	Ga0242825_10031361	F089005	LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHQEL
Ga0242825_1009047	Ga0242825_10090475	F078822	SFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0242825_1020483	Ga0242825_10204831	F076190	VRTAGGSITISVKNVFTAASRVSGRVWSLVRITVPNDLKFVRIRVEKP
Ga0242825_1055550	Ga0242825_10555501	F078004	MSTPFYNNIIFFQITVFYVPAVSRRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLV