3300029777: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 023_10_29_stool_2

Overview

Basic Information

• IMG/M Taxon OID: 3300029777
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282876 | Ga0243715
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 023_10_29_stool_2
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 203917506
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F052660	Metagenome	142	N
F070093	Metagenome	123	N
F078004	Metagenome	117	N
F088921	Metagenome	109	N
F090515	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243715_1004574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5815
Ga0243715_1013482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2138
Ga0243715_1014466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2007
Ga0243715_1063924	All Organisms → cellular organisms → Bacteria	521
Ga0243715_1066193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243715_1004574	Ga0243715_10045742	F090515	VTTCCKVCPKAALQGTAPGRVACLEFAGEEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS
Ga0243715_1013482	Ga0243715_10134823	F088921	KKIAVKTSALGATIRLYKIGTGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMRSK
Ga0243715_1014466	Ga0243715_10144662	F052660	MCILRVLPEKTSERIGQERAGTEWTVVKSKIRLCIRNRSYGRFLHGGILMGIALPIPAQRAKSHDFACWWPAAADHSRSADALPGKSNF
Ga0243715_1063924	Ga0243715_10639241	F070093	LAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPN
Ga0243715_1066193	Ga0243715_10661931	F047125	LLMVLGVMLSGFWAADALDHMRKEILQQEGKRRGWWS
Ga0243715_1066503	Ga0243715_10665031	F078004	MSTPFYNNIIFFQITVFYVPAVSRRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVS