3300029769: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_14_stool_2

Overview

Basic Information

• IMG/M Taxon OID: 3300029769
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283024 | Ga0243863
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_14_stool_2
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 192115930
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F070093	Metagenome	123	N
F090515	Metagenome	108	N
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243863_102924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	9058
Ga0243863_112167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1925
Ga0243863_113360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1750
Ga0243863_120438	All Organisms → Viruses → Predicted Viral	1119

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243863_102924	Ga0243863_1029241	F070093	NFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPK
Ga0243863_112167	Ga0243863_1121671	F029444	MDVLGQLTGFELEDLMTWTVSNLQRPFREDFSLEKSGIIAEKGSQIFGCRFVGFDGPKKAAPFFNF
Ga0243863_113360	Ga0243863_1133601	F090515	LQGTVPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS
Ga0243863_120438	Ga0243863_1204381	F097493	GSNMYKFYSKNGTAQFYERGVEIDGTVYGIRTDSDILRIKRSVVNSKFAESEEDFDMNVEIAKIQHMDITLEQPTSEQLSQIQAKTYNSMTELKQHVQSIMNGELTQDEINAMLLLRIAEMEVAITNEQTTN