3300029746: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37136

Overview

Basic Information

• IMG/M Taxon OID: 3300029746
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283809 | Ga0245173
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37136
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 210871142
• Sequencing Scaffolds: 20
• Novel Protein Genes: 25
• Associated Families: 25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F032286	Metagenome / Metatranscriptome	180	Y
F039198	Metagenome	164	Y
F042910	Metagenome	157	N
F043945	Metagenome	155	N
F050793	Metagenome	145	N
F051934	Metagenome	143	N
F052660	Metagenome	142	N
F055739	Metagenome	138	N
F058154	Metagenome	135	N
F068855	Metagenome	124	N
F068941	Metagenome	124	N
F074964	Metagenome	119	N
F076190	Metagenome	118	Y
F077319	Metagenome	117	N
F078003	Metagenome	117	N
F078004	Metagenome	117	N
F087336	Metagenome	110	N
F089053	Metagenome	109	Y
F090484	Metagenome	108	N
F090513	Metagenome	108	N
F090514	Metagenome	108	N
F096287	Metagenome	105	N
F099406	Metagenome	103	N
F101191	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245173_100058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	201095
Ga0245173_100065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	193275
Ga0245173_100099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	159170
Ga0245173_100107	Not Available	151991
Ga0245173_100168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	112986
Ga0245173_100258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	85102
Ga0245173_100275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	80936
Ga0245173_100346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	68489
Ga0245173_100654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	40349
Ga0245173_100797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	33909
Ga0245173_101587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	18037
Ga0245173_102045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	14153
Ga0245173_102390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12189
Ga0245173_103264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8975
Ga0245173_108699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3290
Ga0245173_111180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2611
Ga0245173_112929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2281
Ga0245173_116996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1778
Ga0245173_126566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1186
Ga0245173_135795	All Organisms → cellular organisms → Bacteria	889

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245173_100058	Ga0245173_10005857	F096287	MQRIQKRRAGQRQTQNALIGLLSAVSMTRIGLTQLLPLCGSAAWWLSAACMLPGLCVYGAFRLLLRHTHTRTLTDCARKLLGNFGGILIMLTLTLPLLLDGIASLTALITFFTEGIGARGSQFTLTLLTASVMLIALNHDGLPRGVYLLRHVLLVAAAIIAINALLDAHPDGIVPLLGEGVPPLLSGIRSSWGMSWMLLLLLEFPAEEGTRRTPVMFVALLPCPVILLLLSLSIPPELTVPGRSLASRLALPTLFLQPAVRTLAQCLLMMTLFLSIAGSAQLAARFLTSSCQKPKKWVPYALIGLLTLTQLFDISRLWRVLTAFTAWSLVPGVLLLLVLTIARLCRREKA
Ga0245173_100065	Ga0245173_100065106	F077319	MQENTVCAANCTVQEKRGGQKIMLIRNATLQMSATERTCMDVRVMNGCVWEMGAALVKGLYEAEIDLCGDVLMPGRILETPISAADEKTLRLLCRRLYREGVRYFVADCPADALLRVQNRPERRGALPVTALPNPEPLRSGTGMPLTRWTAAGEFISMMDEHSGD
Ga0245173_100065	Ga0245173_100065144	F051934	MGLMRRLAAAALAAVLLLSTALGERVTFRLSADIDPVQYPAQERKLAQGLKSLFRLLTVEGDVVASDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQATDLGGETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGLRQAIADLAAQENDGRLENTALITCAEEIARLSEDDRTLYYYIEAFGLESGADANIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEETVFSYADADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNAQVSFSLPVSYPVTLPFYAQIDADGMMTGDDGIHLAFEGEAQGDTVIIRRIQPDHSATMMTLTVKVIQVAEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWLAALPAKLVQGAMDAMEDSGLLGTLTDAILNGEAGEY
Ga0245173_100099	Ga0245173_10009916	F068941	MDNKKFIIGVVLLLFLMLGGTYAYYKWSSSDNMNVNVKIDGGTVTFNGGSNITSTIIPTASKEEGIKKDITVKASKAGVTINLCMNLTTMPDELKEKSFEYEIYYNNSTLVKKGNFGVYNANTNTSGIAYATSGVTTLTLFTGRDVSTSNTDKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGENAVLAGN
Ga0245173_100107	Ga0245173_100107109	F074964	MITKKNVNKLQGAVIKENAANLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFALYSKVYKDTNADKEKGIEAKTADWCAENVVYGSEYKAFGFTTAESLETKKSTKWLVKETDEYKSTYVAVKIKSYSIRTIAKCVSEYLAHESNQQ
Ga0245173_100107	Ga0245173_10010763	F099406	MAEVGYNSKFEGREVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSNYLDLSMFSGNSGTLDEASFGKVLDAYNNKITLGKLAGNYYSLDYFLEGRDFEGAFELKIVFVSFSDTNTGEGVSKSDIEIHVGTYTVTQDKAYKVLSNMVTLSNTMMSYLRFMSKAPRVVTTLVNLPKDTHNIIANVASATNLSMTASSEYVGREWQVRVNNTTGIDITQPLPTSGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA
Ga0245173_100107	Ga0245173_10010783	F090484	VSCFLLILVQSSATWFWRLSSKRHKSDGYPQKSIRFFLLQIMTLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNKKDLLHKLGIGYSKFKNMTGHPMFDELFRMTNSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNKIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNISTTVGNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL
Ga0245173_100168	Ga0245173_10016848	F058154	MKNRTFQRLFPLLRMGSILLAAVLFCAALIGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDASRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGRPVSLVLCELAMGGVVLVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLEGEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVATLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIES
Ga0245173_100258	Ga0245173_10025857	F055739	MTEQQLREKLQFAYATMPDTTRAAFEHSLTHHRAPETHRSIGLSRTMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALEERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAKGILLDENGQMPPEGKPIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAEQRIITLTDAGVEDYLLEMCGAGWDEIEQISKADLLLRCGGFERAETYTAAFATEGNTQYVHPELAGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPEGTALPNGANLPDVWRIYRNDEQNPAGEAGWARASGYAGVPGGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE
Ga0245173_100275	Ga0245173_1002758	F078003	VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKQMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDALGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLVHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPYTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQEKISGQ
Ga0245173_100346	Ga0245173_1003467	F043945	MKHNLRAAFLSLLLVLTLGVMPVFAESADHAMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLNGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVAELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIVRFDVDKGKGEMMEFALEDDENSHLMPDMPGFFRWSAESSKYERTLYDGKVLTMVNLPNGEATSVVHNLVNTLTLQPIQDYDVTLGDYVTHDAYYAYAPNKDNTAMYFVHDNTVWVMEYDEENSQFSEPRGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGGVE
Ga0245173_100654	Ga0245173_10065410	F087336	MVAELEQVPKAFSAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAP
Ga0245173_100797	Ga0245173_10079713	F101191	LLISHHPASAECLQLGEGMLLCGFDLDKALSSRDPLDCMAEAVADDTKRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPKNLARLLPSDTEMTERVTTLTPKQARKPLSRLCWIGTTSRGLLLIELRNPLCISGASLTSVPDGAGKLPFTFLAQNDRPGDINLPARLYWWKEETHDAA
Ga0245173_100797	Ga0245173_10079715	F042910	LADRLYCALNGTTLHDLDARIHLLDVEELAPAVRTVTASRIGGGLHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTISAAGKISFQGLTIAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPESADDLLLRPGVLNEIRVEASAAAFVSGRCKGRYC
Ga0245173_101587	Ga0245173_1015876	F090513	MLKIFAMAKYVRKMEWKLLHIKHILYMRPFGALKIALQSVGNKNGTKAVLQGWAAAFVPYMLSFT
Ga0245173_102045	Ga0245173_10204516	F050793	MRKYEVDVPENVEMADIHAIQTRVKKHNLLTVALLIPLFAGYALRESSETLGGIVFVLSIALMVLGFISGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEVFPTLADVREYASQEGYEPMDVDFEQMTDEEFQQFLDRSRI
Ga0245173_102390	Ga0245173_10239012	F032286	MVKWVCQIVTPIRHRALVFNTRLFAGTAADDALVTGNTLSFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADYRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENALKNADFHAHGQDRERAEI
Ga0245173_103264	Ga0245173_1032641	F052660	MCILRVLPEKTPEKIGQERDGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDLAHWWPAAAGHSRSADALPGKSNS
Ga0245173_108699	Ga0245173_1086992	F013656	MEKKTYKEANKSETETTINVLYHEKIITIYTNKVDLQKKLNKLLGAPTREYKTKRSITGSSWDISMDDKSIISKLILKANIFEI
Ga0245173_111180	Ga0245173_1111802	F089053	MEGPRPDKFAFGVRIGRVVDECRPAKGSIKKWVHGFANGQPELSTAEEVNVKNMEVFL
Ga0245173_112929	Ga0245173_1129292	F090514	MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFVNRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLSPASIFF
Ga0245173_116996	Ga0245173_1169961	F039198	MQITNTEIQGTKYVQIYLTEEELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKRVGLNRNVC
Ga0245173_126566	Ga0245173_1265662	F068855	VPIISKCPSSSVPTVEAQGPQARKTLALQGLQAEKENKNANVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGWATW
Ga0245173_130178	Ga0245173_1301782	F078004	LFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAITITGMLTSHHDVSLAAQTVLVIGTIFHNTF
Ga0245173_135795	Ga0245173_1357953	F076190	AGGSITISVKNVFTAASRVSGRVWSLARITVPNGLKSVRIRGRKTQNNSLYSYFQREPL