3300029720: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35989

Overview

Basic Information

• IMG/M Taxon OID: 3300029720
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283865 | Ga0245229
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35989
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 279676652
• Sequencing Scaffolds: 30
• Novel Protein Genes: 35
• Associated Families: 33

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	14
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Intestinimonas → Intestinimonas butyriciproducens	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F026592	Metagenome / Metatranscriptome	197	Y
F029444	Metagenome	188	Y
F039147	Metagenome	164	N
F039198	Metagenome	164	Y
F041521	Metagenome	159	Y
F043413	Metagenome	156	N
F045105	Metagenome	153	N
F047125	Metagenome / Metatranscriptome	150	N
F050793	Metagenome	145	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245229_1000010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	458202
Ga0245229_1000089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	179879
Ga0245229_1000096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	173953
Ga0245229_1000099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	172909
Ga0245229_1000301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	97109
Ga0245229_1000361	Not Available	86624
Ga0245229_1000453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	71306
Ga0245229_1000494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	66928
Ga0245229_1000500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	66212
Ga0245229_1000591	All Organisms → cellular organisms → Bacteria	56822

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245229_1000010	Ga0245229_1000010298	F095494	VSDPKEKEVQAILQAIDYGHLPPRETQRRLLNIIQAEAARTDAPTDETKIHTCMDLLERLQGEQKPIAPARVDALRQHIAAAHQKNERKRQKRKKIIAAAACSAAAIAVAFAVSHPLLWYENWTTSDEQQHFVTSHEIAIEMLETAVADPMLPTDDTVEVQSIAALDALIGRKTGIPEMVNGQWELQHRYVNFTRSGISISLMYINAADAQQTIVGVINLISNPQYMMLSFEQSYEGTIQQFDGLNFYITENINKPVALWQGDDKLLLFSGRTSQEEVTSLLRTIIREMGE
Ga0245229_1000010	Ga0245229_100001060	F101192	MTYRGWLLVDIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQLAKAAPTSITPCGEDTIRRWVSGRYQIALRFNRYDVCLGVEEEIDG
Ga0245229_1000010	Ga0245229_100001063	F073573	MPTIVSFYQRFPNEAPPLNLSAFDRTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSDGMPFQVRRMELRTGDTTYAILPDNVQQYTKRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLPAAQKKAIRRFCMDCEESAITYQPAFLWYKDYCTKA
Ga0245229_1000089	Ga0245229_1000089155	F039147	MRARRLLILLMMLLLLPQAQAERLTLYTRPGQVDEATPFQLRPTELSICSVTRAMGGVVVLANDDNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYSMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMENLSCLNISYRDLDTDKIYTYPASLTRMHVCGSVLAISVMQENGIKVVLVDLTDGAIREIAGESLEAMYEWADGELLLWRLEGSPNEISRSSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEDPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPEVILAQETLAKSAMNAASLAARMSASADAPDILRLGLTPNTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRNGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTTNADLVGKMLAQVIADQEATAKCVLLADYDEPIEDSYYLIMVNDYEKTLTELRRQQENAPVWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFNALVSQVHQGKISLEEFVEEADKLIERLEQ
Ga0245229_1000096	Ga0245229_100009616	F050793	MRETGAIAPNDAEGEKTMRKYEVDVPENVEMADIHAIQTRVKKHNLLTVALLIPLFAGCALRESSETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEVFPTLADVREYATQEGYEPMAVDFETMTDEEFQQFLDRSRI
Ga0245229_1000099	Ga0245229_1000099108	F074898	MRKILSLLLILALFLPCALAETPQGIDLALTSTYGDVLSLRMTAGLGETPFCSLTLPSGQIDLAFSPDKGLCVQSGGQWAQLLVEGHPMDAALLTTPLKLLDGRSPSEALGLLAEDVNKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRMAASVLGKIYSMEYLDGLNFSDIYHNLLASVVQSSEVARAYRSAMRGYLLSNFRLSGQIGIDKGELLFSQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQAGSNFSLRLNNENANVFALNANVFSLESTSDYIRVKIYYNYYTLTITPATDGLDIVAQARTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFHLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVIPDTLGTIELTQLLDGLF
Ga0245229_1000301	Ga0245229_10003016	F087213	MKKFSSVLLAVLLIFSCWTVATAESTDAVSGAPLDNDIEIVYKEHFDDMVTRYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADAALDARLQAILAACGLNPEDYDISVIRNLSGMPEPITGTNWYCTLIRKGVEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV
Ga0245229_1000361	Ga0245229_100036130	F089054	MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNTYLRYPNQEINNNHLHSEHIRLQIREILQIPLRDITIIDIISLP
Ga0245229_1000453	Ga0245229_100045313	F082714	MVVGIRFAADAPVRTVLQAFLPIFSTVDVDFLVREYWVCTVGSGLPEQRFTAQEMQAAVNALTPNEHAELFTIYVLPHDAPDTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSEEQVRAVIETLRKAVEIRSAEAVERETLARWAF
Ga0245229_1000494	Ga0245229_100049411	F043413	MTERELREKLQSAYGTMPDATRAAFEHSLTHHRVETRNPVRMSRRMRTIVTLALMLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVALNEAYDGDLLTLSVNDLVFDGTTVEVAMNVQPKAGKQVFMDMEVTAECAGQTYTLEIEGCGGGDFMSGMFLPDGTDSWSDSPFAFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWKVEYLPDAQYQALLAGGADTLEAYVQNNWRQQIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEICQMTNLPNAWRVYVNGQTEAGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGEKWDTCHPDAEKGFTLELQE
Ga0245229_1000494	Ga0245229_100049413	F055739	MTEQQLREKLQFVYGNMPDATRAAFEHSLTHHRAPETHRSIGLNRTMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALEERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECNGKMYRFDPLDVYGGDFQSLLMLPDLGGTFDGEKYAAEGILLDETGQMPPEGKPIAWTIEIDVLKAVWQTETIPDDLYEALSEEDNVAQYIREQAEQHIITLTDAGVEDYLLEMCGVGWDEIEQISKADLLLRCGGFERAETYTVAFATEGNTQYIHPELAGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPNGTALPNGTALPNGTALPNGTALPDVWRIYRNDEQNPAGEAGWARASGYAGVPGGVVDVNQPSICLYFAPCVDLTSLRIVPEGEAGFTLNLSGEKGTE
Ga0245229_1000494	Ga0245229_100049452	F068856	MKRLTSILLALLMLVGMALAEETPDAALGDWYALPSDETVLRLTLREDGTFFFGTEGISGIEGKWRKTTDGEYNLAYTNRSSSLLDVIMSMVDSQAPAPDMTMTARLTESGLDVFYGSTAEGAVVHMARDAEELRTERTPRTDTPLEAFAGTWTMETMFLGTMQLMYTPEMGERQVFCTIDGLTMFPGAGLESFPEGTSFPLTFEDGVLRTTIPLTVQMAASSAVVKEIVVDYDLTFFQTADGSLYATLRLNDVPDNPTTMFLLVPME
Ga0245229_1000500	Ga0245229_100050010	F045105	MSDKLKRVLDTNLAGLHVTDAQVNAVLRRVSQDEQRPRVIRWQAIAAVLLVLVLGAGVLLQTGILSDDSPQLTADVTRQGDFLTAAQVKKLLASAADFQFSVDEEAISALMTQVEKDGGCSLSTLLEILCPVGSSLGQWDIRAQVALSQTLERIGYQGILPGMTREPLSTEITAQDALARAVAYIRTNDDPQADFTNLDFYRVGIRFLSGVYDGTCEGAYYCVNFDALDAFGTTYEVAVNAEDGSICRMRRERGAGSNHTADEVTRGFRRIFGYDMRTWTPMQLRVYILALSRADRSSMQTVHELFLSVGRDGFPDVPAEALTREEAIDAALAIQGGSSSDVLAAEYLAGASGDFWKIAIRQPNAPSGQSIVYLELNGLTGTLLTTTYSGNLYGLPQEFFPSQLLSTLDRTDFSHGVPAVDAETAQSAASAAIERQYQRNMAEEGYTCFIESDFEDTAGGFSYYTGGGVVIFTKDAQNTSQGDIYWAALNWYGEVLDVGWNRNPLDAACFTLLMQGYLPPIYQRETVQQLQALLTGGLTDEAGLRQLETDGTLPLFNALLALEVVPDASTKSTADDVTAAALKSLNAHLCYENSSFLVYREDGELIWHFWLSTDMGYFLLDVRDSDLSVVGSVQIPSFSALRASILLPVRVWNTLAENLRVTIFYRDANTQPGIVYGMYANHIVQRYVDLYGANILRWDQATLRSFQSAISISGSYVGDWSVACLCQTIYPDIPDYAISQEVAAEYAARALGDDDYSLRGGVLIDPGEGDPIWKVTLDYPDGRSFNAEVDCRTGAIRTLRQQDTRAMPFYTDYLDFPDDGEYWFRNFVLDEVIEQVRTQMTGRYGNNV
Ga0245229_1000500	Ga0245229_100050038	F056623	MKSTEEMLQAAVQQLQTAEQARLTSETDPARRQLLHLLYAREAAALQSMTLVRAEIPATQKRDWKPLIFPFAAAVLNLGTLALWLTLPNCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVAVADEPEFRRRLVEVEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYTPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
Ga0245229_1000591	Ga0245229_100059118	F068941	MNNKKFIIGVFLLLLLMLGGTYAYYKWSSSDNMNVNVKIDGGTITFNGGSNITSTIIPTASKEEGIKKDITVKASKAGVTMNLYMNLTTMPDELKEKSFEYEIYYNNSTLVKKGNFGVYNSNTNTSGIAYATSGTTTLTLFTGRDVSTNSADKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGENAVLAGN
Ga0245229_1000748	Ga0245229_100074846	F077320	MKRKGMHRRCKWVLLAVLLIMVGIAVWRIWQTPRPTVLHRQDAWLSSAEPEMVDTLPDNTFTAELPEEIDGRLLYIRDYSASGHYQIVWEGVSAEAAEAYLTALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTRAEESTPTPLPEWLADW
Ga0245229_1000775	Ga0245229_100077561	F039198	MQITNTEIQGTKYVQIYLTEEELQKKETNDLIKKYKQEKYSVAIFVSGKENYPEILERIITKQVELNKNVC
Ga0245229_1000899	Ga0245229_100089910	F078003	VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDALGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVTALAEIHQARMANMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPCTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQEKLSGQ
Ga0245229_1001288	Ga0245229_100128816	F075480	MNKTKQEKWQRAYGDTPDSFRQRVASSLPKGQEARHAAFPRRAAVLAAALVLVLTTAYAAVVTHTELVWNAGHPIENEADDRLGLLTGKAGTSGDSLTIGGVTFTVQDGVYSPENGQLFASAVISADESVQLVAVEADMEHEVRLTTPVDAKLDPSGISWAEWAEQNGKTLVPIGMEAAPTLQFLKVNGQTTDTPLIGAFLTQNPDGTVSAGFQVDLTEADTSHLKSCEVQLECRVGAFGKDGKATQWQKEILTATITFK
Ga0245229_1001702	Ga0245229_10017024	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADIPPRLTGAKWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAGPFLFCG
Ga0245229_1002159	Ga0245229_10021598	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLCHAAALFEYREKHQ
Ga0245229_1002647	Ga0245229_100264717	F068855	VEAQGPQVRKRLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGATW
Ga0245229_1003750	Ga0245229_100375013	F074899	GEMSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTAVGKDEVGSSNLPSSSK
Ga0245229_1004193	Ga0245229_10041938	F072366	MLDILAIKADVYQLERQGKRLPVYRYLREVWQKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWLICYYVNTWATFYYIFGREITQDNVEQWKKTLFEEAKERYPDSLLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNDMDQAVQSYFDDAMTWYRDNGRKLLEAKNKTNN
Ga0245229_1007957	Ga0245229_10079575	F026489	QSRCAPRGRFLLAGGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKGWAAPEKTEDSRLFGVKIF
Ga0245229_1008519	Ga0245229_10085191	F026592	ASPQGIDAQASQGSVAPLTEQSDETFSVGQFSSADRE
Ga0245229_1011469	Ga0245229_10114692	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFPYVLPLCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFHKKLLPYVLFSFLKFI
Ga0245229_1012590	Ga0245229_10125903	F026489	ASDFDALEPRKRGCSPLLTPKRRATPKKTEDSRLFGVKIF
Ga0245229_1013105	Ga0245229_10131052	F088921	LEAAKKIAVKTSALGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMRSK
Ga0245229_1013910	Ga0245229_10139103	F047125	MDVALLLMVLGVMLSGFWAADALDHIRKEIIRQEGKRRGWWS
Ga0245229_1019566	Ga0245229_10195663	F068855	VEAQGPQARKALAPQGLQAEKERENANVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGTVW
Ga0245229_1020056	Ga0245229_10200563	F081354	LVRENQQSSAHNFVKDFSLIFLKFSRRSPLKKGAATENPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNTLR
Ga0245229_1026647	Ga0245229_10266471	F029444	IFMEVSEQLTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF
Ga0245229_1043722	Ga0245229_10437223	F041521	YMGGFLSFSNTGAKTTLENCLFAGKFERGENLTDEARLGAFGTLRGVNAIKNCYYLGDDGLEAVHSDSDLKPGSDNVEITMVTEDDLRNNTIATQLGEYWVQGEHYPVIKR
Ga0245229_1078627	Ga0245229_10786272	F092227	MNEQKRKRILRAGCLLLAGVFLLSVLGSVILMFLV