Basic Information | |
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IMG/M Taxon OID | 3300029718 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133139 | Gp0283873 | Ga0245237 |
Sample Name | Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36244 |
Sequencing Status | Permanent Draft |
Sequencing Center | Beijing Genomics Institute (BGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 254020258 |
Sequencing Scaffolds | 21 |
Novel Protein Genes | 21 |
Associated Families | 20 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 11 |
Not Available | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158 | 1 |
All Organisms → cellular organisms → Bacteria | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
Location Information | ||||||||
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Location | United Kingdom: London | |||||||
Coordinates | Lat. (o) | 51.5 | Long. (o) | -0.12 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013656 | Metagenome | 269 | Y |
F029444 | Metagenome | 188 | Y |
F041208 | Metagenome | 160 | N |
F042936 | Metagenome | 157 | N |
F043945 | Metagenome | 155 | N |
F051934 | Metagenome | 143 | N |
F055715 | Metagenome | 138 | N |
F057385 | Metagenome | 136 | N |
F068855 | Metagenome | 124 | N |
F074899 | Metagenome / Metatranscriptome | 119 | N |
F077320 | Metagenome | 117 | N |
F078003 | Metagenome | 117 | N |
F078822 | Metagenome | 116 | N |
F081354 | Metagenome | 114 | Y |
F082887 | Metagenome / Metatranscriptome | 113 | Y |
F087213 | Metagenome | 110 | N |
F088914 | Metagenome | 109 | N |
F088921 | Metagenome | 109 | N |
F092227 | Metagenome | 107 | N |
F101192 | Metagenome | 102 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0245237_1000841 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter | 33891 | Open in IMG/M |
Ga0245237_1004352 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 7855 | Open in IMG/M |
Ga0245237_1005748 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 6217 | Open in IMG/M |
Ga0245237_1008306 | Not Available | 4570 | Open in IMG/M |
Ga0245237_1008586 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 4440 | Open in IMG/M |
Ga0245237_1010361 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter | 3781 | Open in IMG/M |
Ga0245237_1011069 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 3567 | Open in IMG/M |
Ga0245237_1011479 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 3469 | Open in IMG/M |
Ga0245237_1011485 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158 | 3467 | Open in IMG/M |
Ga0245237_1012467 | All Organisms → cellular organisms → Bacteria | 3228 | Open in IMG/M |
Ga0245237_1017284 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2397 | Open in IMG/M |
Ga0245237_1018987 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2212 | Open in IMG/M |
Ga0245237_1020996 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia | 2015 | Open in IMG/M |
Ga0245237_1021515 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 1970 | Open in IMG/M |
Ga0245237_1025554 | All Organisms → cellular organisms → Bacteria | 1688 | Open in IMG/M |
Ga0245237_1026441 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1636 | Open in IMG/M |
Ga0245237_1035187 | Not Available | 1244 | Open in IMG/M |
Ga0245237_1036990 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1185 | Open in IMG/M |
Ga0245237_1055532 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 777 | Open in IMG/M |
Ga0245237_1061761 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 692 | Open in IMG/M |
Ga0245237_1065464 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 653 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0245237_1000841 | Ga0245237_100084136 | F029444 | MGVSAQLTGFELEDFMSWTVSNLQRPFREDFSLEISGIIAEKESQIFGRRFVGFDGPKK |
Ga0245237_1004352 | Ga0245237_10043524 | F101192 | MQTEPSDKEGRNMTYRGWLLVGIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQIAKAAPTSITPCGEDNIRRWVSERYQIALRFNRYDICLGVEEEIDG |
Ga0245237_1005748 | Ga0245237_10057484 | F029444 | MEVSEQLTGFELEDPMSWTVSNLQRPFREDFSLKKSGIITEKESQKFGRRFVGFDGPKKAAPFFNF |
Ga0245237_1008306 | Ga0245237_10083061 | F078822 | FLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL |
Ga0245237_1008586 | Ga0245237_10085862 | F078003 | VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKQMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDASGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPYTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQEKLSGQ |
Ga0245237_1010361 | Ga0245237_10103612 | F081354 | LVRENQQSSAHNFVKDFSPIFLKSSRRSPLKKGAGCRNPLENGKAEVQILFEPLQATISSMELPKNFENKKLPNTLR |
Ga0245237_1011069 | Ga0245237_10110691 | F057385 | MKKLLAVLLSIMMLAMPLTSMAENSVWDNAARQETTITIHDLNADLVAALGGDDTAMAAINDLLAALSLTGYQQGDEAGFDLNLSGKSVLGMASLTTAAEENQLMYVSSALLGGVIAVNSKDVEAIKEKALRATMKMSGQSDEEIDKAIEESKEQLSGNAEYTALMEAAANLSSMTEEQLMEELTQADTTAFMTMMNEILSGAEMAEVTEQPGDCDAAKSYVKVTVPPEKLAEMTKALLEMIHSVPSIGAYMDALFSAADTSWDDLLKELDEADLYADDIVYEYWMTEAGELVRMTASVKINNGGEEPLPMSFTATRNTADGVATWLVTIKSAEDTAATLTFAGDLENFTANLTAYAGEDSVEINVSGKGIGTDSSVVDVEIKETVDGVEQGFGVVVTTATTMD |
Ga0245237_1011479 | Ga0245237_10114792 | F041208 | MRKILAMLLSVLLLLLTAAVGETPAPYAPETVLPLVANNRPYRDFARGAISSSEDAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMRAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEAIASYIRRFAELNGFVEVADYAREEVTTFGDYAVAVTVQVTLDGTPYRFTMRLDMMAFTSVENVNLHPAAAQTQRDILLLMRDNLAEKGVDITQTFFAVQADDADGETKLTGIASFPADAASDAIREQYGELERYTLHYSGRASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARADGTFAESWVSSDTLTENDAAPAAPKREPIPTLESYQITLNGTAYTAFAINKVEKGYDAFADIAGTRTAVVDVLTSAAQGVIAEYGVDASDLLCRTVVEYGYRADKGCWQVDFTIPQRDMADDAYEVEVDDKDGKVTGMWGPQDGNG |
Ga0245237_1011485 | Ga0245237_10114856 | F074899 | MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVGSSNLPSSSTNSP |
Ga0245237_1012467 | Ga0245237_10124674 | F042936 | VWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGAFTPPYLGKVYFRSRLRGKG |
Ga0245237_1017284 | Ga0245237_10172843 | F087213 | WTAATAESIDAVSGAPLDNDIEIVYKEHFDDMVTRYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADAALDARLQAILAACGLNPEDYDISVIRNLSGMPEPITGTNWYCTLIRKGVEVAEDETNPYDMVIVLYGDEMTVGAFVLNPE |
Ga0245237_1018987 | Ga0245237_10189871 | F043945 | MKHNLRMAFLSLLLVLTLGVMPVFAESADHAMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLDGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVAELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIVRFDVDTGKGEMMGFALEDDENSHLLTDMPGIFQWSGTSSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNTAMYFVHDNTVWVMEYDEENS |
Ga0245237_1020996 | Ga0245237_10209963 | F077320 | MKRKGMHRRRKLVLLAVSLIMVGIAVWRIWQTPRPTVMHRQDAWLSSAEPEMVDTLPDNAFTAELPEEIDGRLSYIRDYSASGHYQIVWEDVSAEAAEAYLTALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTCAEEPTATPLPEWLADW |
Ga0245237_1021515 | Ga0245237_10215153 | F088921 | LGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKLAMIRNKMRSK |
Ga0245237_1025554 | Ga0245237_10255542 | F055715 | LTKADEFDKINELLIERTAKKFERTSKNKLKKFLTNEKFCDKINELIRVGTAKILDN |
Ga0245237_1026441 | Ga0245237_10264414 | F088914 | VGRILPVCSGFFVFWSRKEGANYQISVKSFSTLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGKFIVFSAWYAAKALEMDVK |
Ga0245237_1035187 | Ga0245237_10351871 | F082887 | SLNKKNLEYNILGGFNMEKIKTIAKYTINVLAIISALVTGINAVEGITIPYAIQIVQVIAVVQGVISTYLLGQKAISNREKK |
Ga0245237_1036990 | Ga0245237_10369901 | F051934 | SDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQATDLGGETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGVRQAIADLAAQETSGRLENTALITCAEEIARLSEDDRALYYYIEAFGLESGADANIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEETVFSYAEADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNAQVSFSLPVSYPVTLPFYAQIDADGMMTGDDGIHLAFEGEAQGDTVIIRRIQPDHSATMMTLTVKVIQVAEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWLAALPAELVQGAMDAMEDSGLLGTLTDAILNGEAGEY |
Ga0245237_1055532 | Ga0245237_10555322 | F068855 | VEAQGPQVRKILAPQWLQAEKESENANVQNAGWLHSFDTDYHYRGSDLHYHVNVSAALSEGGAAW |
Ga0245237_1061761 | Ga0245237_10617611 | F013656 | MSEIMEKKIYKEVNKNETETTINVLYKEEKICIYTNKVDLQKQLNKLLGEPTKEYKIKRSIVGSSWEIDFKEKSKISQMILKANIYEL |
Ga0245237_1065464 | Ga0245237_10654641 | F092227 | PSGLMKEEKRKRILRVGCLILAGIFALSMLGSVVMMLLV |
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