3300029698: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37194

Overview

Basic Information

• IMG/M Taxon OID: 3300029698
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283820 | Ga0245184
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37194
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 197377191
• Sequencing Scaffolds: 14
• Novel Protein Genes: 19
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola dorei	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041208	Metagenome	160	N
F043413	Metagenome	156	N
F043945	Metagenome	155	N
F045105	Metagenome	153	N
F047126	Metagenome	150	N
F051934	Metagenome	143	N
F056623	Metagenome	137	N
F058154	Metagenome	135	N
F070133	Metagenome	123	N
F072366	Metagenome	121	N
F074898	Metagenome	119	N
F077319	Metagenome	117	N
F077320	Metagenome	117	N
F082714	Metagenome	113	N
F082715	Metagenome / Metatranscriptome	113	N
F088920	Metagenome	109	Y
F090515	Metagenome	108	N
F091068	Metagenome	108	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245184_100067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	206444
Ga0245184_100091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	178405
Ga0245184_100106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	160385
Ga0245184_100110	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola dorei	157603
Ga0245184_100209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	107677
Ga0245184_100237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	97980
Ga0245184_100326	All Organisms → cellular organisms → Bacteria	79611
Ga0245184_100400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	71281
Ga0245184_100786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	40575
Ga0245184_100850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	37769
Ga0245184_101581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	19883
Ga0245184_102989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10369
Ga0245184_127647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	856
Ga0245184_128126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	837

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245184_100067	Ga0245184_100067136	F058154	MKNRTFQRLFPLLRMGSILLAAVLFCAALVGVNAQLTVGTNEERNLATYLGLALTAVVAYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDAPRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMDERFIASPMATARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVAMLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIES
Ga0245184_100067	Ga0245184_10006765	F077320	MKRKGMRRRCKLVLLAVLLIMVGIAVWRIWQTPRPTVLHRQDAWLSSAEPEMVDTLPDNAFTAELPEEIDGRLLYIRDYSASGHYQIVWEDVSAEAAEAYLTALLDKGFTRLMGMAEDIASGVLLARGDLTLSISLSGGTLNMLMTRAEESTPTPLPEWLADW
Ga0245184_100091	Ga0245184_100091110	F082715	MMKFMKRALSLLISAMLLLGCFALAEEAPLLPIAIVSYDLTDEATTAALSALIEPKENALTRWERVVLSDGREAWVICQFDQATMSNAWSHVIDAETQEVLQEDTTDTGFFATAQARWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTAADYDAVGYGYIMGSSEQNGTWQVFFVKGNEVVSTVNLDARDATILLVEPDEEGNG
Ga0245184_100091	Ga0245184_100091123	F077319	MQENTVCAANCTVQEKRGGQKIMLIRNATLQMSATERTCMDVRVMNGCVWEMGAALVKGLYEAEIDLCGDVLMPGRMLETPISAADEKALRLLCRRLYREGVRYFVADCPADALLRVQNRPERRGALPVTVLPNPEPLRSGTGMPLTRWTAAGEFVGMMDEHSGD
Ga0245184_100091	Ga0245184_100091163	F051934	MGLMRRLAAAALAAVLVLSTALGERVTFRLSADIDPVQYPAQERKLAQGLKSLFRLLTVEGDVVASDGSFDARIDLSLTNAPEKTATRIRFFGLDSHWGIQATDLGGETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGLRQAIADLAAQENDGRLENTALIACAEEIARLSEDDRALYYYIEAFGLESGTDANIFDALATLPEYVEANFPDGLSIEHTENGVSWQDGEETVFSYADADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNAQVSFSLPVSYPVTLPFYAQIDADGMMTGDDGIHLAFEGEAQGDTVIIRRIQPDHSATMMTLTVKVIQVAEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWLAALPAKLVQGAMDAMEDSGLLGTLTDAILNGEAGEY
Ga0245184_100106	Ga0245184_100106156	F074898	MRKILSLLLILALFLPCALAETPQGIDLALTSTYGDGLSLRMTAGLGETPFCSLTLPSGQINLAFSPDKGLCVQSGGQWAQLLVEGHPVDAALLTTPLKLLDGRSPSEVLGLLAEDVNKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRMAASVLGKIYSMEYLDGLNFSDIYHHLLASVVQSSEVARAYRSAMRGYLLSNFRLSGQIGIDKGELLFSQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQAGSNFSLRLNNENANVFALESTSDYIRVKIYYNYYTLTITPATDGLDIVAQARTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDEDFQLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVIPDTLGTIELTQLLDDLF
Ga0245184_100110	Ga0245184_100110142	F099451	MEIKNVGQLRKIIENLSDDYEIEMRIRRKLTDEELKNCRYPYPYDTEYLTLEFDDIGVSDKVLCLGVTSNE
Ga0245184_100209	Ga0245184_10020920	F091068	MNEKNQQVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKQQKRRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMEPAKEEQTANVPRIDVPDGWEGLFFPTFLPDDLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWAEGKRMLRVTSIGLPADEAVLVAQSVKKIFAE
Ga0245184_100209	Ga0245184_10020922	F043945	MKHNLRMAFLSLLLVLTLGVMPVFAESADHAMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLNGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVAELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIVRFDVDKGKGEMMEFALEDDENSHLMPDMPGFFRWSAESSKYERTLYDGKVLTMVNLPNGEATSVVHNLVNTLTLQPIQDYDVTLGDYVTHDAYYAYAPNKDNTAMYFVHDNTVWVMEYDEENSQFSEPRGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGGVE
Ga0245184_100237	Ga0245184_10023710	F043413	MTERELREKLQSAYGTMPDATRAAFEHSLTHHRVETRHPVRMSRRMRTIVTFALMLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVALNEAYDGDLLTLSVNDLVFDGTTVDVAMNVQPKAGKQVFMDMEVTAECAGRAYTLEIEGCGGGDFMSGMFLPDGTGSWSDSPFGFDGVLWDDDMQSPPEGTPIAWTMTFELLQPVWEVEYLSDAQYQALLAGGADALETYVQNNWRQQIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRSADTIIVQFTTDFADDYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGETDSGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGEKWDACHPDAEKGFTLELQE
Ga0245184_100260	Ga0245184_10026057	F045105	MSDKLKRVLDTNLAGLHVTDAQVNAVLRRVSQDEQRPRVIRWQAIAAVLLVLVLGAGVLLQTGILSDDSPQLTADVTRQGDFLTAAQVKKLLASAADLQFSVDEEAISALMTQVEKDGGCSLSTLLEILCPVGSSLGQWDIRAQVALSQTLERIGYQGILPGMTREPLSTEITAQDALARAVAYIRTNDDPQADFTNLDFYRVGIRFLSGVYDGTCEGAYYCVNFDALDAFGTTYEVAVNAENGSICRMRRERGAGSDHTADEVTRGFRRIFGYDMRTWTPMQLRVYILALSRADRSSMQTVHELFLSVGRDGFPDVPAEALTREEAIDAALAIQGGSSSEVLAAEYLAGASGDFWKIAIRQPNAPSGQSIVYLELNGLTGTLLTTTYSGNLYGLPQEFFPSQLLSTLDRTDFSHGVPAVDAETAQSAASAAIERQYQRNMAEEGYTCFIESDFEDTAGGFSYYTGGGVVIFTKDAQNTSQGDIYWAALNWYGEVLDVGWNRNPLDAARFTLLMQGYLPPIYQRETVQQLQALLTGSQTDEAGLRQMETDGTLPLFNALLALEVVPDASTKSTADDVTAAALKSLNAHLCYENSSFLVYREDGELIWHFWLSTDMGYFLMDVRDSDLSVVGSVQVPSFSALRASILLPVRVWNTLAEKLRVTIFYRDANTQPGIVYGMYANHIVQRYVDLYGANILRWDQATLRSFQSAISISGSYVGDWSVACLCQTIYPDVPDYAISQAVAAEYAARALGDDDYALRGGVLIDPGEGDPIWKVTLDYPDGRSFNAEVDCRTGAIRTLRQQDTRVMPFYTDYLDFPDDGEYWFRNFVLDEVIEQVRTQMTGRYGNNV
Ga0245184_100326	Ga0245184_10032653	F082714	MAVGIRFAADAPVRTVLQAVLPIFSTADVDFLVREYWVCTFGNGLPERRFTAQEMRRAVDALTPDEHAELFTIYALPHDAPGTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSGEQVEAAFEALTTAGLCEKVEEVEKETLAHWGF
Ga0245184_100400	Ga0245184_10040053	F041208	MRKILAMLLSVILLLTAAVAETSAPYAPETVLPLVANNRPYRDFARGAISSSEDAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMRAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGVLPDNLDEAISSYIWRFADLNGFVKVADYAREEVTTFGDYAVAVTVQVTLDGTPYRFTMRLDMMAFTSVENANLHPTAAQTQRDILLLMRDNLAEKGVDITQTFFAVQADDADGETKLTGIASFPADAASDAIREQYGELERYTLHYSGRASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARADGTFAESWVSADTLTENDAAPAAPKREPIPTLESYQITLSGTAYTAFAINKVEKGYDTFADIAGTQTAVVDVLTSAAQGVIAEYGVDASDLLCRTVVEYGYRADKGCWQVDFTIPQRDMADDAYEVEVDDKDGKVTGLWGPQDGNG
Ga0245184_100786	Ga0245184_1007863	F070133	MKRLLGLLMAVMVMMGGMAGAEASTDNASMQLIRMNPLAFRKEPVKLYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLRIYDWSFCAFPDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNSYISDAACIGQTVYFDIYLTNQQSEILFYDMKQQNITDSQTLHTANDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSISAGE
Ga0245184_100850	Ga0245184_1008507	F072366	MLDILAIKADVYQLERQGKRLPVYRYLREVWQKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWQICYYVNAWATFYYIFGREITQENVEQWKKTLFKEAKERYPDSLLFEFILHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNDMDQAVQSYFDDAMTWYRDNGRKLLEAKNKTNN
Ga0245184_101581	Ga0245184_1015818	F056623	MKSTEEMLQAAVQQLQTAEQARLTSETDPARRQLLHLLYAREAAALQSMTLVRAEIPAAQKRDWKPLIFPLAAAVLNLGALALWLTLPNCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVAVADEPELRRRLVEAEGRIALDVQTIEALFAQESVTIVSTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYTPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
Ga0245184_102989	Ga0245184_1029892	F090515	VITCCKAGQKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS
Ga0245184_127647	Ga0245184_1276472	F088920	VSARPHYYLAFRAGLILHLILHFSQKVAIFAPKRAILLIFVPTLFFAGLSVFSPQTSPKISGQTSLH
Ga0245184_128126	Ga0245184_1281263	F047126	LFPKVYLKTKKMTNISQTQAGFKSKSLGILCGFQGLLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAHILSPLESPCILCSLLRYFHILSKKLQKTC