3300029681: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36794

Overview

Basic Information

• IMG/M Taxon OID: 3300029681
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283803 | Ga0245167
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36794
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 160251471
• Sequencing Scaffolds: 8
• Novel Protein Genes: 28
• Associated Families: 27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F047125	Metagenome / Metatranscriptome	150	N
F050794	Metagenome	145	N
F055715	Metagenome	138	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F067720	Metagenome	125	Y
F067845	Metagenome	125	N
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078004	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F085718	Metagenome	111	N
F088914	Metagenome	109	N
F089005	Metagenome	109	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F093883	Metagenome	106	N
F098313	Metagenome	104	N
F102167	Metagenome	102	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245167_100075	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	156340
Ga0245167_100423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	49834
Ga0245167_103094	Not Available	7151
Ga0245167_104749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4841
Ga0245167_105574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4136
Ga0245167_111566	All Organisms → cellular organisms → Bacteria	2025
Ga0245167_119318	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1199
Ga0245167_141996	Not Available	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245167_100075	Ga0245167_100075100	F093883	MEEDKDIKKDIRDYLKEEADTHIRHWLAIKRESKRLYSEIEDRTKKIALKSSSLIKEDDFVALHEMTHKIQMLNIEAVKANSRLMFIIQFATSFGMDLDFDTTYASTAKSIMEDRTSGFVFYDDKERLKYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKAD
Ga0245167_100075	Ga0245167_100075105	F058555	METKIRILHIMKSNFDKIITERYTPRNIQAKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVFKHVFLRNRMHGGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHKASKTPRIKDMFVKKGESVYTCLDKNLDSNTRRWMANKSRKLNRVKMLSKIIFSARNRNINKIYKVTKKRTVKFNVSYLMDRLNIKLSKEGMMLISQRTVYRMIKEVLSMCCKTISDLYDEVKKNNGIVNTKDRKNVTIGHLRLSYRGTIMHIIIAEDFIKDVFLGVKGVEMSKAG
Ga0245167_100075	Ga0245167_100075121	F102167	MDINQIKKYLPAGWDVVDLIDHGIIDLDIMNGKMIGEYVAVLMIKSYDRITESHNLTSFSFHDKDMGGLRRLVSNAIMAVGLRNNTLKGDGNTAIK
Ga0245167_100075	Ga0245167_100075124	F083452	MSGRIKIKPKNKDKKTKIDVFKVIEGRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDMIDKYVKRK
Ga0245167_100075	Ga0245167_100075128	F057001	MTSKELNKVQKEVKKASEKTLTGAVKAWCQLFKSGKDINEILKDNDIKVDKAVVPALVSLAKDKEVVIQLCKEILPRVNNTFCAYKEVEREYYDKQDQANNSKLPLDKVNSIAILGNTHKRFGYCEPVAYSDTDNVPYYEVFNGSDKRIVKCAVPIKRYTYNLIAKCITYYLTHPKNDR
Ga0245167_100075	Ga0245167_100075133	F080673	MKLQDEALLYLRDNITREEAYYILTKENEMTEVLIAKKKDGSKRIKILDMEYTIERDDMLLLFDTDGIIDECLLTSSHIGINMYFRRQDIRDILSKKLEVMEYRYIKIQVDNIPVVEKRRVILDLTGHRVDRNDRDKIDFMFVYYMARLCV
Ga0245167_100075	Ga0245167_100075138	F078006	MIRGQFPAPWHNLNVSSMEDDILKRAAAELKEAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCCIKEEATFDLATALDVLNEPLPRWCKSYGVYPEQYKDIDRWYNSDNYNKKIFKEI
Ga0245167_100075	Ga0245167_100075140	F085718	MVIEFDFEIYKRGDYDKVYLRSGKEVRILCHDGKGNYPIVGMFDHYEGNAYTILRYDKTGRRYNDRRSSLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSKNIRGNIYLQGSSKSSVSYYVDKLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDETAV
Ga0245167_100075	Ga0245167_100075167	F078005	MKKSKFVKELERIIDMVKAEDDGFEYGGKVIFYKEDDDNCEINVKNIEMNLGVEANVMAGMDDMDFTCLMSEVYKQKAVKAIMMEKDDDEDN
Ga0245167_100075	Ga0245167_100075186	F083451	MDKSEKEKQILDLLMSRKDIRKLVEKSNECYSKMDFVGAMRYRQEIKDIVDRESKIMLTKSESLIGLMNDADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMMECKKEIDYLMKGTSKSFQISFAVRSDEMREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM
Ga0245167_100075	Ga0245167_1000752	F076653	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFLSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGFILAKELGYDINSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFMGKRYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYNKGFKKRLAKRFNESLRGGGDLFGANLACMVCDRRDIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYLYYTFNK
Ga0245167_100075	Ga0245167_10007526	F098313	MREQEFDFVVYPLKLIITVGLDYETLCNRFENMEPDHKGEWGDKDDMDKEASFVNLVRDRDDDGKFAILWNFSSDDDIMMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGDCVSKFINSKNTD
Ga0245167_100075	Ga0245167_10007544	F050794	MQDLRIQRVKVLMMLYTSHYFVNNRQRQLLDHTYALSRDQAFDYMTEFNKRLSDKIGIECTMDTLLPTDDDNANIIIEYNGIIKKLMREAERLELDTDAIKDMMCDLLNELKGDIDFNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVEMIETRYNRFVW
Ga0245167_100075	Ga0245167_10007547	F077313	MSKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGIEPLVNTNQGLPAPVNPLGIYSLDTPDQLRTKYANAFDQDSVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQDREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTEVITDDTTIEPDFAKYIRDTYGIKSTPKDTYATLMDRYKVKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIHKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIADAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINTDERLEYYKTFMPLAYDAYMSAPKATAAKALQDAIYSTTGGWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKASYHDRMRDNKFGQYSSSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGSMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVETNRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRAWADNVNARTWADTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0245167_100075	Ga0245167_10007556	F064725	VIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLICEIPGGDKAEADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNTFNKYIKII
Ga0245167_100075	Ga0245167_10007575	F106193	VGCNTCKEKALRAERERIERSMMNHSSSTVVSDMEYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGGGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAKYIKP
Ga0245167_100075	Ga0245167_10007579	F075481	MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIKTSDLSADIVITERKFDTDKDVDPATGERPVSSQTDTHIVIGRRDSTVTADSLGIDKTRNDIKNMDNKIDIKSKDVDDKDESKWPTAIIFISILGILVVLFVLLKRLGLIK
Ga0245167_100075	Ga0245167_10007580	F089590	MWYKMKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWLREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKSVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS
Ga0245167_100075	Ga0245167_10007584	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYNDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGRDDYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLIVSHTKYVNDGIPVDRLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLKTLDLSSCYLDRYIKEFNDLPKLKTLNITPGPSDMWNYFDLNTVPAFEVDKINPNIYSFIFLRDWMNGEIRTGWNDDNMSGRGLEHLTDFNADHCNNLRMDKLPDYIYEMRAITWFGVSCSTHTQKRSDDFVDSFYKLVTEWDQITMTSVAKDGKRNQFYSLSVSMYNAISPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWMIKPE
Ga0245167_100075	Ga0245167_10007592	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEATDFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDIDPELPDYLVEEILDMVAKQFNLNENELYRYRIDKDNVASFK
Ga0245167_100423	Ga0245167_1004232	F089005	LTKSKQCSIIALALLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFEESSKNYSEMYTKKHQE
Ga0245167_103094	Ga0245167_10309414	F067720	MASITYEHFVDTNKMYAAQEQFRDITKMVCARFRGFTKTCHLGNAPVMVRNAGELPQPFWLGDTCGGGSCSAARCAARA
Ga0245167_104749	Ga0245167_1047493	F047125	MGVALLLMVLGVMLSGFRAADALDHMRKEIIRQEGKRRGWWS
Ga0245167_105574	Ga0245167_1055742	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMGYTGDLNKFLYWSGCYGVPEDVTVALLLDDSTAMTARLYAPQADSAAAELLDDAVGHSELGAAFIDYNGTAYVVAVFR
Ga0245167_111566	Ga0245167_1115661	F055715	LTKANEFDKINELLIERTAKKFKRASKNKLKKFLTNEKFCDKINKLIRVGTAKILDN
Ga0245167_112747	Ga0245167_1127471	F078004	YRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTILIIGTIFHNTF
Ga0245167_119318	Ga0245167_1193181	F075481	SIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVVADSLGVNRIRNDVGNLDNRIDIKSKDIDDKKESRWPIVWIVAGILMILLVLVYILKRVNVL
Ga0245167_141996	Ga0245167_1419961	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGKFIVFS