3300029664: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37400

Overview

Basic Information

• IMG/M Taxon OID: 3300029664
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283847 | Ga0245211
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37400
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 116218522
• Sequencing Scaffolds: 5
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F059106	Metagenome	134	N
F078004	Metagenome	117	N
F090514	Metagenome	108	N
F097172	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245211_100343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	65438
Ga0245211_100445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	51920
Ga0245211_100720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	30321
Ga0245211_101294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	12725
Ga0245211_101323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	12288

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245211_100226	Ga0245211_10022621	F078004	LSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAITITGMLTSHHDVSLAAQTVLVIGTIFHNTF
Ga0245211_100343	Ga0245211_10034363	F097172	MKKNVLKKLMCAVLAAACVATAVVPAMADDVITAEAATKKVTSAYKYHLEGYDKNGYPVSGFSKTSFYKDLNSLPAVKTGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKPVKEGKKYKLEYLYPDAVGNYGDLYENNYLARLRTILDNYKEEHPEYADVIEETYSDETDFVNKYPIDKDKFTTKLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK
Ga0245211_100343	Ga0245211_10034364	F097172	MKKNVLKKLMCAVLATACVATAVVPAMADDVVTAEAATKKVTSAYRYHLEGCDKKGYVMDGFSKAAFYKDLNSLPAVKTGKTTINVPAVTSNVKSVSKEKGNPRYESFVKFKAPKTGKYVFTIDNLQGTDDKSLKCMADGDLCQISKTGKKYGLDGVEDSDTVGKYDTLYENNYLARLRTILDNYKVEHPEYTDVIEETYEYQRDFVNTIPTTKIKFTTKLKKGQTYVYVINNTLGKTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYRK
Ga0245211_100445	Ga0245211_10044536	F090514	MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGTKWFVILLTIVPAGSRARAGSSLPLIPASNIF
Ga0245211_100720	Ga0245211_1007201	F059106	ILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVFV
Ga0245211_101294	Ga0245211_1012941	F097172	MKKNVFKKLMCVVLAAACVATAVVPAMADDVVTAEAATKKVTSAYKYHIDGYDKKGYPASYSKTSFYKDLNSLPAVKIGRTTINVPAVTSNVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLNNLQGTDDKSLKCFSGGIYKPIKEGKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYADVIEYDYNDYTDFVNKYPVDKIKFTTKLKKGHTYVYVIDNALGRTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYRK
Ga0245211_101323	Ga0245211_1013234	F047125	MDVVLLLMVLGVMLSGFWAADALDHMRKEIIRQEGKRRSWWS